Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0020945 Sechium edule HOM05D005081 ORTHO05D005506 2.7e-126 455.3 224 100.0
ClCG06G014000 Citrullus lanatus HOM05D005081 ORTHO05D005506 6.6e-80 301.2 250 69.2
MELO3C017390.2 Cucumis melo HOM05D005081 ORTHO05D005506 3.6e-78 295.4 253 66.8
CsaV3_1G032220 Cucumis sativus L. HOM05D005081 ORTHO05D005506 4.4e-76 288.5 254 66.1
Sed0028150 Sechium edule HOM05D005081 ORTHO05D005506 1.9e-74 283.1 235 68.5
GSVIVG01035163001 Vitis vinifera HOM05D005081 ORTHO05D005506 3.2e-42 176.0 246 48.0
CiPaw.15G154600 Carya illinoinensis HOM05D005081 ORTHO05D005506 1.3e-38 164.1 244 45.1
Cpa.g.sc115.44 Carica papaya HOM05D005081 ORTHO05D005506 1.1e-37 161.0 245 45.7
TWI32G0620 Tripterygium wilfordii HOM05D005081 ORTHO05D005506 1.1e-37 161.0 249 45.0
CiPaw.16G103000 Carya illinoinensis HOM05D005081 ORTHO05D005506 2.2e-35 153.3 242 44.6
PGR044G2548 Punica granatum HOM05D005081 ORTHO05D005506 6.4e-35 151.8 247 44.9
QL11p009451 Quercus lobata HOM05D005081 ORTHO05D005506 7.1e-34 148.3 246 41.1
Rhsim01G0113200 Rhododendron simsii HOM05D005081 ORTHO05D005506 1.6e-33 147.1 249 40.6
Manes.15G189400 Manihot esculenta HOM05D005081 ORTHO05D005506 6.0e-33 145.2 245 43.7
Hma1.2p1_0022F.1_g014783 Hydrangea macrophylla HOM05D005081 ORTHO05D005506 3.3e-31 139.4 250 39.2
vmacro20793 Vaccinium macrocarpon HOM05D005081 ORTHO05D005506 4.3e-31 139.0 257 41.2
Actinidia29969 Actinidia chinensis HOM05D005081 ORTHO05D005506 1.3e-30 137.5 246 41.5
Cc00_g16170 Coffea canephora HOM05D005081 ORTHO05D005506 2.1e-30 136.7 249 41.0
Sabra06G0052800 Salix brachista HOM05D005081 ORTHO05D005506 2.1e-30 136.7 268 38.1
Atru.chr12.2077 Acer truncatum HOM05D005081 ORTHO05D005506 6.2e-30 135.2 243 41.2
Eucgr.C02188 Eucalyptus grandis HOM05D005081 ORTHO05D005506 8.1e-30 134.8 256 38.7
FAN12G4058 Fragaria x ananassa HOM05D005081 ORTHO05D005506 4.0e-29 132.5 241 40.2
Oeu008926.1 Olea europaea HOM05D005081 ORTHO05D005506 4.0e-29 132.5 245 42.0
FvH4_4g06450 Fragaria vesca HOM05D005081 ORTHO05D005506 5.3e-29 132.1 241 40.2
Sc08g0004640 Simmondsia chinensis HOM05D005081 ORTHO05D005506 9.0e-29 131.3 246 40.7
Duzib170G0058 Durio zibethinus HOM05D005081 ORTHO05D005506 1.2e-28 131.0 228 39.9
Oeu044689.1 Olea europaea HOM05D005081 ORTHO05D005506 1.2e-28 131.0 243 39.9
Potri.018G132600 Populus trichocarpa HOM05D005081 ORTHO05D005506 2.0e-28 130.2 265 37.7
Haze_19038 Corylus avellana HOM05D001026 ORTHO05D003027 2.6e-28 129.8 245 40.8
MBI16_g18201_MAGBIO Magnolia biondii HOM05D005081 ORTHO05D005506 2.6e-28 129.8 249 39.0
Lsat_1_v5_gn_7_59220 Lactuca sativa HOM05D005081 ORTHO05D005506 4.5e-28 129.0 238 39.1
Potri.006G070900 Populus trichocarpa HOM05D005081 ORTHO05D005506 4.5e-28 129.0 274 38.7
MSTRG.10457 Avicennia marina HOM05D005081 ORTHO05D005506 1.3e-27 127.5 244 38.9
CSS0043250 Camellia sinensis var. sinensis HOM05D005081 ORTHO05D005506 2.2e-27 126.7 244 40.2
FAN22G0520 Fragaria x ananassa HOM05D005081 ORTHO05D005506 2.2e-27 126.7 241 38.6
Solyc05g046310.3 Solanum lycopersicum HOM05D005081 ORTHO05D005506 2.2e-27 126.7 245 40.0
Nitab4.5_0010835g0010 Nicotiana tabacum HOM05D005081 ORTHO05D005506 2.9e-27 126.3 239 38.1
FAN07G0684 Fragaria x ananassa HOM05D005081 ORTHO05D005506 3.8e-27 125.9 239 38.5
TAR383G1035 Trochodendron aralioides HOM05D005081 ORTHO05D005506 3.8e-27 125.9 250 38.8
TAR625G0352 Trochodendron aralioides HOM05D005081 ORTHO05D005506 4.9e-27 125.6 244 38.1
PGSC0003DMG400013692 Solanum tuberosum HOM05D005081 ORTHO05D005506 8.4e-27 124.8 245 41.2
Sopen00g006190 Solanum pennellii HOM05D005081 ORTHO05D005506 1.1e-26 124.4 246 38.6
RcHm_v2.0_Chr4g0398241 Rosa chinensis HOM05D005081 ORTHO05D005506 2.5e-26 123.2 247 41.3
Peaxi162Scf00889g00221 Petunia axillaris HOM05D005081 ORTHO05D005506 3.2e-26 122.9 249 38.6
Ah.14g083630 Amaranthus hybridus HOM05D005081 ORTHO05D005506 7.1e-26 121.7 235 39.1
Nitab4.5_0000833g0060 Nicotiana tabacum HOM05D005081 ORTHO05D005506 7.1e-26 121.7 242 38.0
Ciclev10012648m.g Citrus clementina HOM05D005081 ORTHO05D005506 9.3e-26 121.3 241 36.9
FAN17G0390 Fragaria x ananassa HOM05D005081 ORTHO05D005506 9.3e-26 121.3 241 38.6
HanXRQChr03g0067191 Helianthus annuus HOM05D005081 ORTHO05D005506 9.3e-26 121.3 238 38.2
CANSAT80G2033 Cannabis sativa HOM05D005081 ORTHO05D005506 1.2e-25 120.9 258 35.7
Gohir.A05G408500 Gossypium hirsutum HOM05D005081 ORTHO05D005506 1.2e-25 120.9 236 39.4
Actinidia38513 Actinidia chinensis HOM05D005081 ORTHO05D005506 2.1e-25 120.2 238 37.8
Nitab4.5_0011475g0010 Nicotiana tabacum HOM05D005081 ORTHO05D005506 2.1e-25 120.2 243 37.4
Peaxi162Scf00315g00813 Petunia axillaris HOM05D005081 ORTHO05D005506 2.1e-25 120.2 247 38.1
Aqoxy7G02679 Aquilegia oxysepala HOM05D005081 ORTHO05D005506 3.5e-25 119.4 231 36.8
Gorai.012G008600 Gossypium raimondii HOM05D005081 ORTHO05D005506 3.5e-25 119.4 236 38.1
Duzib168G1013 Durio zibethinus HOM05D005081 ORTHO05D005506 4.6e-25 119.0 232 39.2
Dinv02618 Davidia involucrata HOM05D005081 ORTHO05D005506 1.0e-24 117.9 177 44.6
ECA240G1118 Erigeron canadensis HOM05D005081 ORTHO05D005506 1.0e-24 117.9 238 39.9
Gohir.D04G006900 Gossypium hirsutum HOM05D005081 ORTHO05D005506 1.0e-24 117.9 236 37.7
Aa31LG4G14880 Aethionema arabicum HOM05D005081 ORTHO05D005506 3.0e-24 116.3 240 37.5
Thecc.09G189400 Theobroma cacao HOM05D005081 ORTHO05D005506 3.0e-24 116.3 237 35.9
EL10Ac8g18324 Beta vulgaris HOM05D005081 ORTHO05D005506 5.1e-24 115.5 250 37.2
Hma1.2p1_0022F.1_g014780 Hydrangea macrophylla HOM05D005081 ORTHO05D005506 5.1e-24 115.5 240 35.4
THA.LOC104808906 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 5.1e-24 115.5 246 35.4
unitig_899.g15188 Utricularia gibba HOM05D005081 ORTHO05D005506 5.1e-24 115.5 246 37.4
Thhalv10003466m.g Eutrema salsugineum HOM05D005081 ORTHO05D005506 6.7e-24 115.2 250 39.6
SGA_v2.0_scaffold63G21842 Striga asiatica HOM05D005081 ORTHO05D005506 6.7e-24 115.2 243 35.4
THA.LOC104815319 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 8.7e-24 114.8 251 37.5
A03p44750 Brassica napus HOM05D005081 ORTHO05D005506 1.9e-23 113.6 236 36.0
MD13G1236100 Malus domestica HOM05D005081 ORTHO05D005506 1.9e-23 113.6 221 38.9
AL7G44130 Arabidopsis lyrata HOM05D005081 ORTHO05D005506 2.5e-23 113.2 251 38.2
AUR62033253 Chenopodium quinoa HOM05D005081 ORTHO05D005506 4.3e-23 112.5 243 36.6
AL3G43930 Arabidopsis lyrata HOM05D005081 ORTHO05D005506 1.3e-22 110.9 230 38.7
Carub.0007s3114 Capsella rubella HOM05D005081 ORTHO05D005506 1.3e-22 110.9 259 37.1
Migut.L01903 Erythranthe guttata HOM05D005081 ORTHO05D005506 1.3e-22 110.9 245 38.0
BraA03t13610Z Brassica rapa HOM05D005081 ORTHO05D005506 3.7e-22 109.4 236 35.6
PSO170G2950 Papaver somniferum HOM05D005081 ORTHO05D005506 3.7e-22 109.4 256 37.9
AUR62021338 Chenopodium quinoa HOM05D005081 ORTHO05D005506 4.8e-22 109.0 244 37.7
AT5G35320 Arabidopsis thaliana HOM05D005081 ORTHO05D005506 6.3e-22 108.6 246 37.4
Carub.0003s2733 Capsella rubella HOM05D005081 ORTHO05D005506 1.1e-21 107.8 235 37.9
Lj4g0023825 Lotus japonicus HOM05D005081 ORTHO05D005506 1.8e-21 107.1 246 33.7
Medtr8g101480 Medicago truncatula HOM05D005081 ORTHO05D005506 3.1e-21 106.3 240 34.2
PSO063G3463 Papaver somniferum HOM05D005081 ORTHO05D005506 3.1e-21 106.3 256 37.9
Sabra18G0112300 Salix brachista HOM05D005081 ORTHO05D005506 4.1e-21 105.9 250 36.4
MBI13_g31561_MAGBIO Magnolia biondii HOM05D005081 ORTHO05D005506 5.3e-21 105.5 227 35.2
DCAR_019825 Daucus carota HOM05D005081 ORTHO05D005506 6.9e-21 105.1 253 37.2
Sp3g25120 Schrenkiella parvula HOM05D005081 ORTHO05D005506 6.9e-21 105.1 241 34.0
CARHR217350 Cardamine hirsuta HOM05D005081 ORTHO05D005506 9.0e-21 104.8 248 35.5
Hund26317 Selenicereus undatus HOM05D005081 ORTHO05D005506 9.0e-21 104.8 252 33.7
THA.LOC104826579 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 9.0e-21 104.8 242 35.5
Nitab4.5_0000053g0180 Nicotiana tabacum HOM05D005081 ORTHO05D005506 2.6e-20 103.2 245 33.9
Cc10_g11560 Coffea canephora HOM05D005081 ORTHO05D005506 4.5e-20 102.4 219 37.9
HanXRQChr10g0303491 Helianthus annuus HOM05D005081 ORTHO05D005506 5.9e-20 102.1 234 37.2
CDE02G3184 Ceratophyllum demersum HOM05D005081 ORTHO05D005506 1.0e-19 101.3 185 38.4
Ah.09g230120 Amaranthus hybridus HOM05D005081 ORTHO05D005506 1.7e-19 100.5 257 35.8
Prupe.1G067800 Prunus persica HOM05D005081 ORTHO05D005506 2.9e-19 99.8 222 36.5
ATR0626G171 Amborella trichopoda HOM05D005081 ORTHO05D005506 6.5e-19 98.6 255 33.7
MSTRG.26528 Avicennia marina HOM05D005081 ORTHO05D005506 8.5e-19 98.2 244 35.7
SalBow6G6882 Salvia bowleyana HOM05D005081 ORTHO05D005506 8.5e-19 98.2 239 32.6
Hund09052 Selenicereus undatus HOM05D005081 ORTHO05D005506 8.5e-19 98.2 244 33.2
Ca_17410_v3 Cicer arietinum L. HOM05D005081 ORTHO05D005506 7.2e-18 95.1 241 31.1
ECA234G2314 Erigeron canadensis HOM05D005081 ORTHO05D005506 9.3e-18 94.7 231 34.6
Actinidia31880 Actinidia chinensis HOM05D005081 ORTHO05D005506 1.2e-17 94.4 251 33.5
Lalb_Chr05g0223691 Lupinus albus HOM05D005081 ORTHO05D005506 1.3e-16 90.9 244 34.8
CARHR103910 Cardamine hirsuta HOM05D005081 ORTHO05D005506 5.1e-16 89.0 224 32.1
Zm00001eb208100 Zea mays HOM05D005081 ORTHO05D005506 1.6e-14 84.0 234 35.0
Glyma.08G028300 Glycine max HOM05D005081 ORTHO05D005506 6.3e-14 82.0 242 31.4
Phvul.002G303500 Phaseolus vulgaris HOM05D005081 ORTHO05D005506 6.3e-14 82.0 228 31.6
arahy.Tifrunner.gnm1.ann1.TAK2NC Arachis hypogaea HOM05D005081 ORTHO05D005506 1.4e-13 80.9 257 31.1
MD16G1241100 Malus domestica HOM05D005081 ORTHO05D005506 1.4e-13 80.9 115 44.3
Thecc.09G002900 Theobroma cacao HOM05D005081 ORTHO05D005506 2.4e-13 80.1 240 29.6
MD15G1102900 Malus domestica HOM05D005081 ORTHO05D005506 4.1e-13 79.3 236 29.7
VMungo0251G2709 Vigna mungo HOM05D005081 ORTHO05D005506 5.3e-13 79.0 241 32.0
Os02g0141500 Oryza sativa ssp. japonica HOM05D005081 ORTHO05D005506 9.0e-13 78.2 236 31.8
TPR.G25464 Trifolium pratense HOM05D005081 ORTHO05D005506 9.0e-13 78.2 251 28.3
BcaB08g34509 Brassica carinata HOM05D005081 ORTHO05D005506 2.0e-12 77.0 236 28.8
BcaC01g03146 Brassica carinata HOM05D005081 ORTHO05D005506 3.4e-12 76.3 235 29.8
C03p55600 Brassica napus HOM05D005081 ORTHO05D005506 3.4e-12 76.3 235 29.8
BolC3t17837H Brassica oleracea HOM05D005081 ORTHO05D005506 3.4e-12 76.3 235 29.8
Psat7g022000 Pisum sativum HOM05D005081 ORTHO05D005506 5.9e-12 75.5 149 36.2
arahy.Tifrunner.gnm1.ann1.FV9V0P Arachis hypogaea HOM05D005081 ORTHO05D005506 7.7e-12 75.1 257 28.8
Prupe.1G455900 Prunus persica HOM05D005081 ORTHO05D005506 2.2e-11 73.6 223 31.4
HPP92_017096 Vanilla planifolia HOM05D005081 ORTHO05D005506 2.2e-11 73.6 241 30.3
HPP92_017106 Vanilla planifolia HOM05D005081 ORTHO05D005506 5.0e-11 72.4 242 30.2
Glyma.05G221800 Glycine max HOM05D005081 ORTHO05D005506 6.5e-11 72.0 251 29.1
Lalb_Chr11g0064261 Lupinus albus HOM05D005081 ORTHO05D005506 3.3e-07 59.7 232 28.0
Atru.chr7.2685 Acer truncatum HOM05D005081 ORTHO05D005506 9.7e-07 58.2 140 35.7
Thhalv10009663m.g Eutrema salsugineum HOM05D005081 ORTHO05D005506 8.2e-06 55.1 115 39.1


User provided reference genes

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