Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0020930 Sechium edule HOM05D006741 ORTHO05D008434 1.0e-263 912.9 485 100.0
ClCG07G013320 Citrullus lanatus HOM05D006741 ORTHO05D008434 1.9e-196 689.5 522 73.9
MELO3C013001.2 Cucumis melo HOM05D006741 ORTHO05D008434 2.9e-189 665.6 518 69.9
CsaV3_3G023590 Cucumis sativus L. HOM05D006741 ORTHO05D008434 2.7e-179 632.5 464 73.3
ClCG00G003340 Citrullus lanatus HOM05D006741 ORTHO05D008434 7.6e-158 561.2 413 74.6
Cfa003646 Carpinus fangiana HOM05D006741 ORTHO05D008434 4.8e-120 435.6 518 50.4
CiPaw.01G231300 Carya illinoinensis HOM05D006741 ORTHO05D008434 8.8e-114 414.8 518 48.5
QL05p019947 Quercus lobata HOM05D006741 ORTHO05D008434 4.1e-111 406.0 524 47.5
Manes.11G033400 Manihot esculenta HOM05D006741 ORTHO05D008434 6.8e-106 388.7 539 45.5
TAR636G1866 Trochodendron aralioides HOM05D006741 ORTHO05D008434 1.5e-105 387.5 523 47.0
Duzib235G1269 Durio zibethinus HOM05D006741 ORTHO05D008434 7.5e-105 385.2 513 48.0
CSS0034583 Camellia sinensis var. sinensis HOM05D006741 ORTHO05D008434 9.8e-105 384.8 507 48.9
Haze_15849 Corylus avellana HOM05D006741 ORTHO05D008434 1.7e-104 384.0 454 49.1
Thecc.06G100200 Theobroma cacao HOM05D006741 ORTHO05D008434 2.2e-104 383.6 514 46.9
CSS0005978 Camellia sinensis var. sinensis HOM05D006741 ORTHO05D008434 2.8e-104 383.3 507 48.7
Actinidia09006 Actinidia chinensis HOM05D006741 ORTHO05D008434 3.5e-102 376.3 514 47.3
COL.COLO4_30514 Corchorus olitorius HOM05D006741 ORTHO05D008434 1.9e-100 370.5 517 45.6
Potri.013G040800 Populus trichocarpa HOM05D006741 ORTHO05D008434 2.8e-99 366.7 528 45.1
Dinv30435 Davidia involucrata HOM05D006741 ORTHO05D008434 1.0e-98 364.8 488 47.1
Rhsim08G0227700 Rhododendron simsii HOM05D006741 ORTHO05D008434 1.0e-98 364.8 516 46.1
Atru.chr1.3525 Acer truncatum HOM05D006741 ORTHO05D008434 2.3e-98 363.6 508 46.3
Cpa.g.sc25.10 Carica papaya HOM05D006741 ORTHO05D008434 6.8e-98 362.1 510 44.3
Potri.005G053300 Populus trichocarpa HOM05D006741 ORTHO05D008434 1.2e-97 361.3 523 45.1
Duzib192G0766 Durio zibethinus HOM05D006741 ORTHO05D008434 2.0e-97 360.5 511 45.4
Sabra05G0046800 Salix brachista HOM05D006741 ORTHO05D008434 4.4e-97 359.4 522 45.2
TWI75G1374 Tripterygium wilfordii HOM05D006741 ORTHO05D008434 1.4e-95 354.4 525 45.7
Actinidia39136 Actinidia chinensis HOM05D006741 ORTHO05D008434 3.2e-95 353.2 522 44.3
Prupe.3G058900 Prunus persica HOM05D006741 ORTHO05D008434 1.5e-92 344.4 532 45.7
Gohir.A06G189500 Gossypium hirsutum HOM05D006741 ORTHO05D008434 6.2e-91 339.0 500 45.2
Gorai.010G230700 Gossypium raimondii HOM05D006741 ORTHO05D008434 1.4e-90 337.8 500 45.0
Sabra13G0037700 Salix brachista HOM05D006741 ORTHO05D008434 1.5e-89 334.3 528 42.0
Gohir.D06G197900 Gossypium hirsutum HOM05D006741 ORTHO05D008434 3.4e-89 333.2 500 44.8
Nn6g35322 Nelumbo nucifera HOM05D006741 ORTHO05D008434 3.4e-89 333.2 523 43.8
MD09G1202700 Malus domestica HOM05D006741 ORTHO05D008434 7.5e-89 332.0 530 46.2
CANSAT56G2677 Cannabis sativa HOM05D006741 ORTHO05D008434 8.3e-88 328.6 534 40.8
PGR102G3207 Punica granatum HOM05D006741 ORTHO05D008434 9.2e-87 325.1 533 41.1
vmacro17014 Vaccinium macrocarpon HOM05D006741 ORTHO05D008434 1.2e-86 324.7 472 43.4
Oeu017120.1 Olea europaea HOM05D006741 ORTHO05D008434 4.6e-86 322.8 514 40.9
Lj3g0008384 Lotus japonicus HOM05D006741 ORTHO05D008434 2.3e-85 320.5 469 45.0
MD17G1183900 Malus domestica HOM05D006741 ORTHO05D008434 6.6e-85 318.9 525 43.6
arahy.Tifrunner.gnm1.ann1.CS2PXA Arachis hypogaea HOM05D006741 ORTHO05D008434 1.1e-84 318.2 461 44.3
Lalb_Chr01g0013161 Lupinus albus HOM05D006741 ORTHO05D008434 1.9e-84 317.4 523 43.4
arahy.Tifrunner.gnm1.ann1.X4D5DL Arachis hypogaea HOM05D006741 ORTHO05D008434 5.6e-84 315.8 508 41.3
Ciclev10027417m.g Citrus clementina HOM05D006741 ORTHO05D008434 8.3e-80 302.0 487 41.5
Eucgr.J02937 Eucalyptus grandis HOM05D006741 ORTHO05D008434 1.0e-77 295.0 441 42.0
MSTRG.11026 Avicennia marina HOM05D006741 ORTHO05D008434 8.6e-77 292.0 504 38.7
PSO210G6928 Papaver somniferum HOM05D006741 ORTHO05D008434 1.5e-76 291.2 534 40.4
PSO210G4778 Papaver somniferum HOM05D006741 ORTHO05D008434 9.5e-76 288.5 528 40.5
Migut.I00896 Erythranthe guttata HOM05D006741 ORTHO05D008434 6.2e-75 285.8 491 42.0
DCAR_023081 Daucus carota HOM05D006741 ORTHO05D008434 1.1e-74 285.0 510 39.6
RcHm_v2.0_Chr2g0140551 Rosa chinensis HOM05D006741 ORTHO05D008434 1.4e-74 284.6 507 41.6
GSVIVG01016979001 Vitis vinifera HOM05D006741 ORTHO05D008434 1.4e-74 284.6 490 39.8
SGA_v2.0_scaffold69G23318 Striga asiatica HOM05D006741 ORTHO05D008434 2.4e-74 283.9 506 40.3
Sc12g0010170 Simmondsia chinensis HOM05D006741 ORTHO05D008434 5.2e-74 282.7 533 37.7
Medtr8g014490 Medicago truncatula HOM05D006741 ORTHO05D008434 6.8e-74 282.3 485 41.2
Aqoxy7G03978 Aquilegia oxysepala HOM05D006741 ORTHO05D008434 8.9e-74 282.0 511 38.2
PGSC0003DMG400026441 Solanum tuberosum HOM05D006741 ORTHO05D008434 1.2e-73 281.6 489 40.5
Solyc12g044620.2 Solanum lycopersicum HOM05D006741 ORTHO05D008434 1.7e-72 277.7 518 39.2
Cc04_g02540 Coffea canephora HOM05D006741 ORTHO05D008434 1.1e-71 275.0 514 38.1
Nitab4.5_0001172g0120 Nicotiana tabacum HOM05D006741 ORTHO05D008434 1.6e-70 271.2 526 38.6
THA.LOC104806335 Tarenaya hassleriana HOM05D006741 ORTHO05D008434 3.5e-70 270.0 508 37.2
Psat4g197400 Pisum sativum HOM05D006741 ORTHO05D008434 4.6e-70 269.6 485 39.0
FAN05G1069 Fragaria x ananassa HOM05D006741 ORTHO05D008434 1.0e-69 268.5 501 41.1
FAN14G5382 Fragaria x ananassa HOM05D006741 ORTHO05D008434 1.3e-69 268.1 506 39.7
Lj9A513G60 Lonicera japonica HOM05D006741 ORTHO05D008434 6.6e-69 265.8 442 40.5
TPR.G26946 Trifolium pratense HOM05D006741 ORTHO05D008434 8.7e-69 265.4 542 38.7
FvH4_6g32410 Fragaria vesca HOM05D006741 ORTHO05D008434 1.5e-68 264.6 508 40.2
Sopen12g023080 Solanum pennellii HOM05D006741 ORTHO05D008434 1.5e-68 264.6 521 38.6
Ca_23263_v3 Cicer arietinum L. HOM05D006741 ORTHO05D008434 5.6e-68 262.7 483 41.0
Ca_23272_v3 Cicer arietinum L. HOM05D006741 ORTHO05D008434 5.6e-68 262.7 483 41.0
Phvul.010G145200 Phaseolus vulgaris HOM05D006741 ORTHO05D008434 8.1e-67 258.8 479 40.1
Peaxi162Scf00177g00125 Petunia axillaris HOM05D006741 ORTHO05D008434 1.4e-66 258.1 426 40.1
ECA232G4726 Erigeron canadensis HOM05D006741 ORTHO05D008434 5.3e-66 256.1 493 38.1
CARHR253650 Cardamine hirsuta HOM05D006741 ORTHO05D008434 3.4e-65 253.4 450 39.3
Hund28870 Selenicereus undatus HOM05D006741 ORTHO05D008434 7.6e-65 252.3 522 38.5
Nitab4.5_0004241g0050 Nicotiana tabacum HOM05D006741 ORTHO05D008434 9.9e-65 251.9 496 38.9
VMungo0331G0583 Vigna mungo HOM05D006741 ORTHO05D008434 2.2e-64 250.8 482 39.6
Hund28829 Selenicereus undatus HOM05D006741 ORTHO05D008434 8.4e-64 248.8 522 38.5
Aa31LG9G10130 Aethionema arabicum HOM05D006741 ORTHO05D008434 1.9e-63 247.7 479 38.8
MBI01_g10133_MAGBIO Magnolia biondii HOM05D006741 ORTHO05D008434 2.4e-63 247.3 514 39.1
Glyma.08G200900 Glycine max HOM05D006741 ORTHO05D008434 5.4e-63 246.1 475 39.2
FAN02G4526 Fragaria x ananassa HOM05D006741 ORTHO05D008434 2.1e-62 244.2 516 39.0
Thhalv10028639m.g Eutrema salsugineum HOM05D006741 ORTHO05D008434 1.7e-61 241.1 481 36.2
AT4G12540 Arabidopsis thaliana HOM05D006741 ORTHO05D008434 1.5e-60 238.0 474 36.9
HanXRQChr09g0276261 Helianthus annuus HOM05D006741 ORTHO05D008434 1.9e-60 237.7 506 38.7
SpUn0055_0020 Schrenkiella parvula HOM05D006741 ORTHO05D008434 1.9e-60 237.7 483 37.1
Carub.0006s3171 Capsella rubella HOM05D006741 ORTHO05D008434 3.3e-60 236.9 488 35.0
Sp6g04980 Schrenkiella parvula HOM05D006741 ORTHO05D008434 5.6e-60 236.1 477 36.9
Lsat_1_v5_gn_4_97420 Lactuca sativa HOM05D006741 ORTHO05D008434 9.6e-60 235.3 513 36.6
Glyma.07G015400 Glycine max HOM05D006741 ORTHO05D008434 3.6e-59 233.4 464 38.4
FAN09G4229 Fragaria x ananassa HOM05D002451 ORTHO05D005601 4.5e-57 226.5 485 38.6
EL10Ac3g05317 Beta vulgaris HOM05D006741 ORTHO05D008434 1.2e-54 218.4 517 35.4
A09p26830 Brassica napus HOM05D006741 ORTHO05D008434 2.1e-54 217.6 475 36.2
AL6G47480 Arabidopsis lyrata HOM05D006741 ORTHO05D008434 4.6e-54 216.5 469 34.8
BcaC04g21238 Brassica carinata HOM05D006741 ORTHO05D008434 5.1e-53 213.0 480 35.4
C09p34000 Brassica napus HOM05D006741 ORTHO05D008434 5.1e-53 213.0 480 35.4
BolC9t56238H Brassica oleracea HOM05D006741 ORTHO05D008434 5.1e-53 213.0 480 35.4
BraA09t38254Z Brassica rapa HOM05D006741 ORTHO05D008434 6.7e-53 212.6 488 35.7
Nn8g39070 Nelumbo nucifera HOM05D006741 ORTHO05D008434 4.3e-52 209.9 373 38.9
AUR62031924 Chenopodium quinoa HOM05D006741 ORTHO05D008434 9.6e-52 208.8 516 33.7
Hma1.2p1_0430F.1_g151390 Hydrangea macrophylla HOM05D006741 ORTHO05D008434 1.3e-51 208.4 485 36.5
Ah.01g005790 Amaranthus hybridus HOM05D006741 ORTHO05D008434 6.2e-51 206.1 515 33.6
CDE02G1085 Ceratophyllum demersum HOM05D006741 ORTHO05D008434 3.4e-41 173.7 507 31.0
ATR0705G093 Amborella trichopoda HOM05D006741 ORTHO05D008434 1.0e-40 172.2 400 34.5
Dinv37976 Davidia involucrata HOM05D006741 ORTHO05D008434 8.4e-40 169.1 220 48.6
Os05g0532500 Oryza sativa ssp. japonica HOM05D006741 ORTHO05D008434 1.4e-34 151.8 507 29.2
TAR624G0518 Trochodendron aralioides HOM05D006741 ORTHO05D008434 1.8e-34 151.4 212 44.8
Cpa.g.sc25.28 Carica papaya HOM05D006741 ORTHO05D008434 2.4e-34 151.0 239 42.3
Zm00001eb353790 Zea mays HOM05D006741 ORTHO05D008434 3.6e-22 110.5 500 26.0
BcaC01g04588 Brassica carinata HOM05D006741 ORTHO05D008434 5.7e-20 103.2 440 25.9
CDE04G0136 Ceratophyllum demersum HOM05D006741 ORTHO05D008434 4.8e-19 100.1 213 37.6
unitig_748.g7440 Utricularia gibba HOM05D006741 ORTHO05D008434 1.7e-16 91.7 144 40.3
unitig_748.g7441 Utricularia gibba HOM05D006741 ORTHO05D008434 1.1e-15 89.0 191 37.2
Actinidia32099 Actinidia chinensis HOM05D006741 ORTHO05D008434 2.6e-12 77.8 165 35.8
CDE04G1568 Ceratophyllum demersum HOM05D006741 ORTHO05D008434 2.6e-12 77.8 111 40.5
C03p36010 Brassica napus HOM05D006741 ORTHO05D008434 5.0e-08 63.5 57 61.4
BolC3t15911H Brassica oleracea HOM05D006741 ORTHO05D008434 5.0e-08 63.5 57 61.4
ECA234G0697 Erigeron canadensis HOM05D006741 ORTHO05D008434 8.5e-08 62.8 92 38.0


User provided reference genes

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