Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0020904 Sechium edule HOM05D007607 ORTHO05D009603 3.1e-61 238.4 131 100.0
ClCG11G013470 Citrullus lanatus HOM05D007607 ORTHO05D009603 4.3e-31 138.3 136 61.8
CsaV3_5G030090 Cucumis sativus L. HOM05D007607 ORTHO05D009603 4.5e-28 128.3 136 59.6
MELO3C011848.2 Cucumis melo HOM05D007607 ORTHO05D009603 2.4e-26 122.5 136 58.8
Actinidia28975 Actinidia chinensis HOM05D007607 ORTHO05D009603 2.5e-18 95.9 132 50.0
Cfa015274 Carpinus fangiana HOM05D007607 ORTHO05D009603 3.5e-17 92.0 137 51.1
PSO675G5570 Papaver somniferum HOM05D007607 ORTHO05D009603 7.9e-17 90.9 131 49.6
Manes.05G131900 Manihot esculenta HOM05D007607 ORTHO05D009603 2.3e-16 89.4 130 50.8
PSO017G0391 Papaver somniferum HOM05D007607 ORTHO05D009603 2.3e-16 89.4 131 48.9
Lsat_1_v5_gn_8_9141 Lactuca sativa HOM05D007607 ORTHO05D009603 3.0e-16 89.0 100 54.0
GSVIVG01038189001 Vitis vinifera HOM05D007607 ORTHO05D009603 5.1e-16 88.2 80 67.5
Thecc.04G162800 Theobroma cacao HOM05D007607 ORTHO05D009603 1.5e-15 86.7 136 48.5
ECA233G0487 Erigeron canadensis HOM05D007607 ORTHO05D009603 2.5e-15 85.9 97 51.5
Ciclev10022842m.g Citrus clementina HOM05D007607 ORTHO05D009603 3.3e-15 85.5 81 61.7
QL10p057428 Quercus lobata HOM05D007607 ORTHO05D009603 1.6e-14 83.2 127 48.0
CiPaw.01G169900 Carya illinoinensis HOM05D007607 ORTHO05D009603 4.8e-14 81.6 127 45.7
Gohir.D10G121500 Gossypium hirsutum HOM05D007607 ORTHO05D009603 6.3e-14 81.3 137 46.0
Gorai.011G133600 Gossypium raimondii HOM05D007607 ORTHO05D009603 6.3e-14 81.3 137 46.0
Haze_01353 Corylus avellana HOM05D007607 ORTHO05D009603 8.2e-14 80.9 136 47.1
Gohir.A10G145500 Gossypium hirsutum HOM05D007607 ORTHO05D009603 1.1e-13 80.5 137 43.8
Atru.chr4.1510 Acer truncatum HOM05D007607 ORTHO05D009603 1.8e-13 79.7 97 55.7
AUR62002416 Chenopodium quinoa HOM05D007607 ORTHO05D009603 1.8e-13 79.7 139 41.0
Duzib212G0637 Durio zibethinus HOM05D007607 ORTHO05D009603 1.8e-13 79.7 136 45.6
Ca_18631_v3 Cicer arietinum L. HOM05D004461 ORTHO05D005543 4.1e-13 78.6 95 52.6
Atru.chr4.1481 Acer truncatum HOM05D007607 ORTHO05D009603 5.3e-13 78.2 87 58.6
CANSAT56G1551 Cannabis sativa HOM05D007607 ORTHO05D009603 6.9e-13 77.8 133 43.6
QL10p057723 Quercus lobata HOM05D007607 ORTHO05D009603 9.0e-13 77.4 127 45.7
Sc13g0006620 Simmondsia chinensis HOM05D007607 ORTHO05D009603 1.5e-12 76.6 75 58.7
Dinv18311 Davidia involucrata HOM05D007607 ORTHO05D009603 2.0e-12 76.3 131 48.9
PGR142G0203 Punica granatum HOM05D007607 ORTHO05D009603 2.6e-12 75.9 131 45.0
Potri.013G128700 Populus trichocarpa HOM05D007607 ORTHO05D009603 5.9e-12 74.7 130 44.6
CiPaw.02G100000 Carya illinoinensis HOM05D007607 ORTHO05D009603 1.0e-11 73.9 128 43.0
CSS0042213 Camellia sinensis var. sinensis HOM05D007607 ORTHO05D009603 2.2e-11 72.8 93 49.5
Rhsim02G0085800 Rhododendron simsii HOM05D007607 ORTHO05D009603 2.2e-11 72.8 80 56.2
RhsimUnG0015300 Rhododendron simsii HOM05D007607 ORTHO05D009603 5.0e-11 71.6 132 43.9
Cc03_g14540 Coffea canephora HOM05D007607 ORTHO05D009603 6.5e-11 71.2 83 53.0
DCAR_005451 Daucus carota HOM05D007607 ORTHO05D009603 6.5e-11 71.2 130 41.5
CSS0037895 Camellia sinensis var. sinensis HOM05D007607 ORTHO05D009603 1.1e-10 70.5 82 51.2
HanXRQChr02g0059081 Helianthus annuus HOM05D007607 ORTHO05D009603 1.4e-10 70.1 93 52.7
RcHm_v2.0_Chr2g0085131 Rosa chinensis HOM05D007607 ORTHO05D009603 1.4e-10 70.1 129 45.7
Hund12359 Selenicereus undatus HOM05D007607 ORTHO05D009603 1.4e-10 70.1 112 45.5
MSTRG.22043 Avicennia marina HOM05D007607 ORTHO05D009603 1.9e-10 69.7 93 46.2
MSTRG.24562 Avicennia marina HOM05D007607 ORTHO05D009603 1.9e-10 69.7 84 54.8
Peaxi162Scf00883g00099 Petunia axillaris HOM05D007607 ORTHO05D009603 1.9e-10 69.7 133 41.4
Solyc12g019550.2 Solanum lycopersicum HOM05D007607 ORTHO05D009603 2.5e-10 69.3 82 51.2
FvH4_1g00500 Fragaria vesca HOM05D007607 ORTHO05D009603 3.2e-10 68.9 129 45.7
CAN.G1237.5 Capsicum annuum HOM05D007607 ORTHO05D009603 9.3e-10 67.4 128 42.2
AUR62023773 Chenopodium quinoa HOM05D007607 ORTHO05D009603 1.2e-09 67.0 139 39.6
MD15G1147800 Malus domestica HOM05D007607 ORTHO05D009603 1.2e-09 67.0 100 50.0
Lj4g0023803 Lotus japonicus HOM05D007607 ORTHO05D009603 1.6e-09 66.6 82 54.9
Lalb_Chr16g0384371 Lupinus albus HOM05D007607 ORTHO05D009603 1.6e-09 66.6 76 51.3
MBI10_g16327_MAGBIO Magnolia biondii HOM05D007607 ORTHO05D009603 3.5e-09 65.5 91 44.0
TAR362G0213 Trochodendron aralioides HOM05D007607 ORTHO05D009603 4.6e-09 65.1 132 43.2
MD02G1004100 Malus domestica HOM05D007607 ORTHO05D009603 7.9e-09 64.3 101 43.6
Zm00001eb318610 Zea mays HOM05D007607 ORTHO05D009603 7.9e-09 64.3 72 54.2
arahy.Tifrunner.gnm1.ann1.RJI6AK Arachis hypogaea HOM05D007607 ORTHO05D009603 1.3e-08 63.5 90 50.0
SalBow6G6796 Salvia bowleyana HOM05D007607 ORTHO05D009603 1.8e-08 63.2 77 48.1
PGSC0003DMG400029159 Solanum tuberosum HOM05D007607 ORTHO05D009603 2.3e-08 62.8 131 40.5
EL10Ac3g06110 Beta vulgaris HOM05D007607 ORTHO05D009603 3.0e-08 62.4 141 36.9
Glyma.07G206400 Glycine max HOM05D007607 ORTHO05D009603 3.9e-08 62.0 107 43.9
Prupe.7G267000 Prunus persica HOM05D007607 ORTHO05D009603 3.9e-08 62.0 143 37.1
Ah.13g073390 Amaranthus hybridus HOM05D007607 ORTHO05D009603 5.1e-08 61.6 56 64.3
C05p20400 Brassica napus HOM05D007607 ORTHO05D009603 5.1e-08 61.6 84 48.8
Migut.N03053 Erythranthe guttata HOM05D007607 ORTHO05D009603 5.1e-08 61.6 105 40.0
unitig_22.g5705 Utricularia gibba HOM05D007607 ORTHO05D009603 5.1e-08 61.6 115 40.0
Cpa.g.sc343.4 Carica papaya HOM05D007607 ORTHO05D009603 6.7e-08 61.2 126 42.1
Nn7g37525 Nelumbo nucifera HOM05D007607 ORTHO05D009603 6.7e-08 61.2 44 77.3
THA.LOC104813690 Tarenaya hassleriana HOM05D007607 ORTHO05D009603 6.7e-08 61.2 127 40.2
Sopen12g009810 Solanum pennellii HOM05D007607 ORTHO05D009603 1.1e-07 60.5 131 38.2
BcaC06g34863 Brassica carinata HOM05D007607 ORTHO05D009603 1.5e-07 60.1 133 40.6
BolC7t42778H Brassica oleracea HOM05D007607 ORTHO05D009603 1.5e-07 60.1 133 40.6
BcaB03g14267 Brassica carinata HOM05D007607 ORTHO05D009603 1.9e-07 59.7 84 46.4
Eucgr.H00285 Eucalyptus grandis HOM05D007607 ORTHO05D009603 2.5e-07 59.3 122 40.2
Glyma.02G138600 Glycine max HOM05D007607 ORTHO05D009603 3.3e-07 58.9 148 37.8
TWI15G0968 Tripterygium wilfordii HOM05D007607 ORTHO05D009603 3.3e-07 58.9 127 37.8
Nitab4.5_0000575g0080 Nicotiana tabacum HOM05D007607 ORTHO05D009603 5.7e-07 58.2 130 41.5
VMungo0251G2348 Vigna mungo HOM05D007607 ORTHO05D009603 5.7e-07 58.2 91 45.1
Aa31LG7G5390 Aethionema arabicum HOM05D007607 ORTHO05D009603 9.7e-07 57.4 139 39.6
Os09g0517000 Oryza sativa ssp. japonica HOM05D007607 ORTHO05D009603 1.3e-06 57.0 40 70.0
BcaB07g32146 Brassica carinata HOM05D007607 ORTHO05D009603 1.6e-06 56.6 83 47.0
BcaC05g26059 Brassica carinata HOM05D007607 ORTHO05D009603 1.6e-06 56.6 84 46.4
BolC5t30734H Brassica oleracea HOM05D007607 ORTHO05D009603 1.6e-06 56.6 84 46.4
C07p22190 Brassica napus HOM05D007607 ORTHO05D009603 2.2e-06 56.2 133 39.8
TPR.G23536 Trifolium pratense HOM05D007607 ORTHO05D009603 2.2e-06 56.2 75 49.3
BraA06t24849Z Brassica rapa HOM05D007607 ORTHO05D009603 2.8e-06 55.8 132 40.2
Carub.0001s2092 Capsella rubella HOM05D007607 ORTHO05D009603 3.7e-06 55.5 126 42.9
A06p17530 Brassica napus HOM05D007607 ORTHO05D009603 6.3e-06 54.7 132 39.4
A07p15130 Brassica napus HOM05D007607 ORTHO05D009603 6.3e-06 54.7 133 38.3
Thhalv10009074m.g Eutrema salsugineum HOM05D007607 ORTHO05D009603 6.3e-06 54.7 126 40.5
Psat7g119360 Pisum sativum HOM05D007607 ORTHO05D009603 6.3e-06 54.7 81 48.1
Medtr4g087540 Medicago truncatula HOM05D007607 ORTHO05D009603 8.2e-06 54.3 95 44.2


User provided reference genes

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