Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0020880 Sechium edule HOM05D006730 ORTHO05D008189 0.0e+00 1352.8 686 100.0
CsaV3_7G002050 Cucumis sativus L. HOM05D006730 ORTHO05D008189 2.8e-275 951.8 687 73.4
MELO3C015702.2 Cucumis melo HOM05D006730 ORTHO05D008189 5.0e-272 941.0 687 72.9
ClCG09G018880 Citrullus lanatus HOM05D006730 ORTHO05D008189 2.9e-264 915.2 657 72.6
Cfa015217 Carpinus fangiana HOM05D006730 ORTHO05D008189 5.6e-146 522.3 710 45.1
QL10p052118 Quercus lobata HOM05D006730 ORTHO05D008189 4.7e-137 492.7 709 44.1
Prupe.8G045700 Prunus persica HOM05D006730 ORTHO05D008189 1.4e-136 491.1 688 43.5
TAR633G1963 Trochodendron aralioides HOM05D006730 ORTHO05D008189 1.6e-129 467.6 693 42.3
TAR633G0487 Trochodendron aralioides HOM05D006730 ORTHO05D008189 1.4e-128 464.5 693 42.0
Ciclev10019155m.g Citrus clementina HOM05D006730 ORTHO05D008189 1.1e-125 454.9 709 42.6
Atru.chr4.1340 Acer truncatum HOM05D006730 ORTHO05D008189 2.7e-124 450.3 677 43.4
MD04G1046800 Malus domestica HOM05D006730 ORTHO05D008189 3.0e-123 446.8 705 39.6
Duzib151G0982 Durio zibethinus HOM05D006730 ORTHO05D008189 1.4e-120 438.0 681 42.3
Manes.04G048400 Manihot esculenta HOM05D006730 ORTHO05D008189 2.4e-120 437.2 706 40.8
Aa31LG1G25250 Aethionema arabicum HOM05D006730 ORTHO05D008189 3.4e-119 433.3 692 40.2
Haze_01419 Corylus avellana HOM05D006730 ORTHO05D008189 1.7e-118 431.0 629 43.1
Thecc.04G171700 Theobroma cacao HOM05D006730 ORTHO05D008189 8.4e-118 428.7 686 39.7
COL.COLO4_28380 Corchorus olitorius HOM05D006730 ORTHO05D008189 2.1e-116 424.1 686 39.8
Cpa.g.sc9.329 Carica papaya HOM05D006730 ORTHO05D008189 3.3e-114 416.8 701 39.1
Eucgr.A00038 Eucalyptus grandis HOM05D006730 ORTHO05D008189 7.3e-114 415.6 703 39.7
Phvul.011G201600 Phaseolus vulgaris HOM05D006730 ORTHO05D008189 2.1e-113 414.1 702 40.7
arahy.Tifrunner.gnm1.ann1.S6BLSS Arachis hypogaea HOM05D006730 ORTHO05D008189 3.1e-112 410.2 692 39.2
Glyma.12G050000 Glycine max HOM05D006730 ORTHO05D008189 3.4e-111 406.8 700 38.7
Nn1g09713 Nelumbo nucifera HOM05D006730 ORTHO05D008189 3.4e-111 406.8 694 38.2
Gohir.D02G011000 Gossypium hirsutum HOM05D006730 ORTHO05D008189 2.9e-110 403.7 686 39.1
AL7G49300 Arabidopsis lyrata HOM05D006730 ORTHO05D008189 3.8e-110 403.3 695 37.6
VMungo0720G0522 Vigna mungo HOM05D006730 ORTHO05D008189 1.9e-109 401.0 698 38.8
Gorai.005G013400 Gossypium raimondii HOM05D006730 ORTHO05D008189 5.4e-109 399.4 686 38.5
Potri.017G018300 Populus trichocarpa HOM05D006730 ORTHO05D008189 7.1e-109 399.1 688 39.2
Actinidia27097 Actinidia chinensis HOM05D006730 ORTHO05D008189 4.6e-108 396.4 676 39.9
Ca_03751_v3 Cicer arietinum L. HOM05D006730 ORTHO05D008189 1.7e-107 394.4 700 37.7
Carub.0007s3500 Capsella rubella HOM05D006730 ORTHO05D008189 2.3e-107 394.0 704 36.9
CiPaw.01G173600 Carya illinoinensis HOM05D006730 ORTHO05D008189 2.3e-107 394.0 659 40.5
Medtr4g068005 Medicago truncatula HOM05D006730 ORTHO05D008189 1.6e-105 387.9 703 39.0
FvH4_1g27220 Fragaria vesca HOM05D006730 ORTHO05D008189 4.8e-105 386.3 689 38.6
arahy.Tifrunner.gnm1.ann1.PF62HI Arachis hypogaea HOM05D006730 ORTHO05D008189 6.2e-105 386.0 679 38.4
FAN26G1825 Fragaria x ananassa HOM05D006730 ORTHO05D008189 1.8e-104 384.4 689 38.3
THA.LOC104805724 Tarenaya hassleriana HOM05D006730 ORTHO05D008189 1.5e-103 381.3 700 38.9
Sabra17G0012500 Salix brachista HOM05D006730 ORTHO05D008189 2.0e-103 380.9 700 38.1
CANSAT56G2182 Cannabis sativa HOM05D006730 ORTHO05D008189 2.6e-103 380.6 701 36.4
Lalb_Chr03g0025971 Lupinus albus HOM05D006730 ORTHO05D008189 9.9e-103 378.6 702 37.6
Lalb_Chr03g0026031 Lupinus albus HOM05D006730 ORTHO05D008189 9.9e-103 378.6 702 37.6
RcHm_v2.0_Chr3g0487611 Rosa chinensis HOM05D006730 ORTHO05D008189 1.7e-102 377.9 712 37.4
TPR.G34183 Trifolium pratense HOM05D006730 ORTHO05D008189 2.9e-102 377.1 718 35.5
PGR102G2296 Punica granatum HOM05D006730 ORTHO05D008189 8.4e-102 375.6 692 36.6
Lj3g0015132 Lotus japonicus HOM05D006730 ORTHO05D008189 1.1e-101 375.2 696 36.2
FAN19G2476 Fragaria x ananassa HOM05D006730 ORTHO05D008189 4.2e-101 373.2 678 38.3
VMungo0647G1321 Vigna mungo HOM05D006730 ORTHO05D008189 5.4e-101 372.9 692 37.7
Sc19g0000330 Simmondsia chinensis HOM05D006730 ORTHO05D008189 1.2e-100 371.7 701 36.2
BcaC08g44345 Brassica carinata HOM05D006730 ORTHO05D008189 4.6e-100 369.8 690 37.1
Sp7g05120 Schrenkiella parvula HOM05D006730 ORTHO05D008189 6.0e-100 369.4 715 36.9
A05p16170 Brassica napus HOM05D006730 ORTHO05D008189 1.0e-99 368.6 695 36.5
Ca_07546_v3 Cicer arietinum L. HOM05D006730 ORTHO05D008189 1.8e-99 367.9 661 36.9
AT5G40520 Arabidopsis thaliana HOM05D006730 ORTHO05D008189 2.3e-99 367.5 716 35.5
CARHR138600 Cardamine hirsuta HOM05D006730 ORTHO05D008189 8.7e-99 365.5 602 40.2
BolC6t36977H Brassica oleracea HOM05D006730 ORTHO05D008189 1.9e-98 364.4 701 36.1
C06p17830 Brassica napus HOM05D006730 ORTHO05D008189 2.5e-98 364.0 725 36.1
BraA05t20528Z Brassica rapa HOM05D006730 ORTHO05D008189 4.3e-98 363.2 694 36.0
Psat7g208760 Pisum sativum HOM05D006730 ORTHO05D008189 1.3e-97 361.7 683 36.5
BcaB02g08030 Brassica carinata HOM05D006730 ORTHO05D008189 1.6e-97 361.3 705 35.5
Oeu002416.1 Olea europaea HOM05D006730 ORTHO05D008189 4.8e-97 359.8 722 35.6
TWI15G0430 Tripterygium wilfordii HOM05D006730 ORTHO05D008189 8.1e-97 359.0 693 38.0
Sabra06G0076300 Salix brachista HOM05D006730 ORTHO05D008189 1.7e-94 351.3 660 37.3
GSVIVG01038091001 Vitis vinifera HOM05D006730 ORTHO05D008189 7.1e-93 345.9 602 37.9
vmacro21172 Vaccinium macrocarpon HOM05D006730 ORTHO05D008189 3.5e-92 343.6 733 36.6
TAR633G2319 Trochodendron aralioides HOM05D006730 ORTHO05D008189 3.1e-88 330.5 517 41.0
vmacro00655 Vaccinium macrocarpon HOM05D006730 ORTHO05D008189 1.5e-87 328.2 646 38.4
Gohir.A02G010500 Gossypium hirsutum HOM05D006730 ORTHO05D008189 7.1e-85 319.3 407 44.5
Lj3A110T20 Lonicera japonica HOM05D006730 ORTHO05D008189 3.9e-83 313.5 633 36.0
Solyc06g073160.4 Solanum lycopersicum HOM05D006730 ORTHO05D008189 2.2e-81 307.8 716 33.1
MSTRG.27276 Avicennia marina HOM05D006730 ORTHO05D008189 1.4e-80 305.1 694 35.9
Sopen06g029510 Solanum pennellii HOM05D006730 ORTHO05D008189 5.3e-80 303.1 722 32.7
Dinv05091 Davidia involucrata HOM05D006730 ORTHO05D008189 8.5e-78 295.8 596 35.7
AUR62028127 Chenopodium quinoa HOM05D006730 ORTHO05D008189 5.1e-75 286.6 686 32.9
AUR62005936 Chenopodium quinoa HOM05D006730 ORTHO05D008189 1.3e-73 282.0 686 31.5
Thhalv10027675m.g Eutrema salsugineum HOM05D006730 ORTHO05D008189 1.3e-73 282.0 699 32.0
Nitab4.5_0001210g0010 Nicotiana tabacum HOM05D006730 ORTHO05D008189 1.1e-72 278.9 737 31.1
Nitab4.5_0001586g0210 Nicotiana tabacum HOM05D006730 ORTHO05D008189 6.9e-72 276.2 657 32.9
Nitab4.5_0002782g0010 Nicotiana tabacum HOM05D006730 ORTHO05D008189 6.9e-72 276.2 693 32.5
PGSC0003DMG400026917 Solanum tuberosum HOM05D006730 ORTHO05D008189 6.9e-72 276.2 722 31.4
Hma1.2p1_0324F.1_g125720 Hydrangea macrophylla HOM05D006730 ORTHO05D008189 1.2e-71 275.4 551 36.1
Lsat_1_v5_gn_5_69460 Lactuca sativa HOM05D006730 ORTHO05D008189 1.2e-71 275.4 649 32.8
Hma1.2p1_3037F.1_g331960 Hydrangea macrophylla HOM05D006730 ORTHO05D008189 2.6e-71 274.2 551 35.9
EL10Ac9g22987 Beta vulgaris HOM05D006730 ORTHO05D008189 7.7e-71 272.7 721 31.3
Peaxi162Scf00180g00519 Petunia axillaris HOM05D006730 ORTHO05D008189 2.5e-69 267.7 649 33.0
Hund25530 Selenicereus undatus HOM05D006730 ORTHO05D008189 4.7e-68 263.5 437 38.4
MBI11_g10487_MAGBIO Magnolia biondii HOM05D006730 ORTHO05D008189 2.3e-67 261.2 623 31.8
Oeu029987.1 Olea europaea HOM05D006730 ORTHO05D008189 1.3e-65 255.4 685 31.8
ECA233G5772 Erigeron canadensis HOM05D005219 ORTHO05D006451 1.1e-64 252.3 586 33.8
SGA_v2.0_scaffold60G20910 Striga asiatica HOM05D005928 ORTHO05D007500 1.2e-63 248.8 658 32.2
SGA_v2.0_scaffold94G28623 Striga asiatica HOM05D006730 ORTHO05D008189 7.7e-63 246.1 659 32.5
Cc03_g12540 Coffea canephora HOM05D006730 ORTHO05D008189 6.5e-62 243.0 680 31.0
ATR0743G243 Amborella trichopoda HOM05D006730 ORTHO05D008189 1.9e-61 241.5 700 28.3
CSS0011413 Camellia sinensis var. sinensis HOM05D006730 ORTHO05D008189 3.9e-59 233.8 286 47.9
HanXRQChr17g0565921 Helianthus annuus HOM05D006730 ORTHO05D008189 2.0e-58 231.5 425 37.9
SHI01154 Sapria himalayana HOM05D006730 ORTHO05D008189 1.7e-54 218.4 569 31.5
FAN28G2072 Fragaria x ananassa HOM05D006730 ORTHO05D008189 9.7e-50 202.6 339 41.3
CDE07G0581 Ceratophyllum demersum HOM05D006730 ORTHO05D008189 2.2e-49 201.4 693 26.8
DCAR_027052 Daucus carota HOM05D006730 ORTHO05D008189 2.0e-47 194.9 328 39.6
CSS0007333 Camellia sinensis var. sinensis HOM05D006730 ORTHO05D008189 4.2e-45 187.2 286 39.2
SGA_v2.0_scaffold36G14479 Striga asiatica HOM05D000061 ORTHO05D008189 3.6e-44 184.1 626 29.2
FAN23G1889 Fragaria x ananassa HOM05D006730 ORTHO05D008189 7.0e-40 169.9 540 30.9
Os09g0103200 Oryza sativa ssp. japonica HOM05D006730 ORTHO05D008189 6.3e-33 146.7 482 29.5
Zm00001eb184290 Zea mays HOM05D006730 ORTHO05D008189 2.3e-30 138.3 449 27.6
unitig_26.g9736 Utricularia gibba HOM05D006730 ORTHO05D006349 8.0e-28 129.8 410 29.0
FAN28G2984 Fragaria x ananassa HOM05D006730 ORTHO05D008189 1.4e-27 129.0 352 30.4
PSO017G5839 Papaver somniferum HOM05D006730 ORTHO05D008189 2.9e-25 121.3 463 28.9
Ah.10g027080 Amaranthus hybridus HOM05D006730 ORTHO05D008189 8.3e-25 119.8 371 30.2
PSO063G4508 Papaver somniferum HOM05D006730 ORTHO05D008189 1.3e-17 95.9 330 27.9
HPP92_022486 Vanilla planifolia HOM05D001064 ORTHO05D000885 4.9e-17 94.0 290 29.7
SEGI_29361 Sequoiadendron giganteum HOM05D006730 ORTHO05D008189 1.6e-12 79.0 329 25.5
Ah.10g027090 Amaranthus hybridus HOM05D006730 ORTHO05D008189 3.6e-12 77.8 270 27.8
Gohir.A02G010550 Gossypium hirsutum HOM05D006730 ORTHO05D008189 4.7e-12 77.4 95 47.4
Actinidia26680 Actinidia chinensis HOM05D006730 ORTHO05D008189 4.4e-10 70.9 312 24.7
HanXRQChr12g0385981 Helianthus annuus HOM05D006730 ORTHO05D008189 4.4e-10 70.9 105 42.9
Dinv05092 Davidia involucrata HOM05D006730 ORTHO05D008189 1.0e-06 59.7 63 47.6


User provided reference genes

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