Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0020873 Sechium edule HOM05D001012 ORTHO05D006553 3.3e-40 167.9 85 100.0
Sed0004779 Sechium edule HOM05D001012 ORTHO05D006553 1.7e-20 102.4 103 57.3
MELO3C006368.2 Cucumis melo HOM05D001012 ORTHO05D006553 2.9e-20 101.7 100 58.0
CsaV3_3G011600 Cucumis sativus L. HOM05D001012 ORTHO05D006553 6.5e-20 100.5 100 57.0
ClCG05G003930 Citrullus lanatus HOM05D001012 ORTHO05D006553 3.2e-19 98.2 85 64.7
Oeu047121.1 Olea europaea HOM05D001012 ORTHO05D006553 5.1e-17 90.9 86 60.5
CiPaw.02G105800 Carya illinoinensis HOM05D001012 ORTHO05D006553 8.7e-17 90.1 94 54.3
TAR633G0662 Trochodendron aralioides HOM05D001012 ORTHO05D006553 8.7e-17 90.1 89 57.3
Haze_11480 Corylus avellana HOM05D001012 ORTHO05D006553 1.1e-16 89.7 100 51.0
Lj6A637T67 Lonicera japonica HOM05D001012 ORTHO05D006553 3.3e-16 88.2 96 51.0
QL06p021551 Quercus lobata HOM05D001012 ORTHO05D006553 3.3e-16 88.2 96 51.0
Nitab4.5_0001041g0100 Nicotiana tabacum HOM05D001012 ORTHO05D006553 4.3e-16 87.8 100 52.0
Nitab4.5_0005154g0070 Nicotiana tabacum HOM05D001012 ORTHO05D006553 4.3e-16 87.8 100 52.0
PSO764G0162 Papaver somniferum HOM05D001012 ORTHO05D006553 7.4e-16 87.0 100 51.0
Cfa014796 Carpinus fangiana HOM05D001012 ORTHO05D006553 9.7e-16 86.7 100 49.0
PSO832G0948 Papaver somniferum HOM05D001012 ORTHO05D006553 9.7e-16 86.7 100 51.0
PGSC0003DMG400001554 Solanum tuberosum HOM05D001012 ORTHO05D006553 9.7e-16 86.7 100 51.0
HanXRQChr15g0464561 Helianthus annuus HOM05D001012 ORTHO05D006553 1.3e-15 86.3 95 52.6
Peaxi162Scf00531g00325 Petunia axillaris HOM05D001012 ORTHO05D006553 1.3e-15 86.3 100 51.0
CAN.G812.18 Capsicum annuum HOM05D001012 ORTHO05D006553 1.6e-15 85.9 100 51.0
Solyc09g090850.3 Solanum lycopersicum HOM05D001012 ORTHO05D006553 2.2e-15 85.5 100 50.0
Sopen09g033810 Solanum pennellii HOM05D001012 ORTHO05D006553 2.2e-15 85.5 100 50.0
Dinv29795 Davidia involucrata HOM05D001012 ORTHO05D006553 2.8e-15 85.1 90 55.6
Nn1g02990 Nelumbo nucifera HOM05D001012 ORTHO05D006553 2.8e-15 85.1 95 51.6
SGA_v2.0_scaffold67G22675 Striga asiatica HOM05D001012 ORTHO05D006553 2.8e-15 85.1 85 60.0
CiPaw.01G176800 Carya illinoinensis HOM05D001012 ORTHO05D006553 3.7e-15 84.7 95 51.6
RcHm_v2.0_Chr4g0395821 Rosa chinensis HOM05D001012 ORTHO05D006553 6.3e-15 84.0 91 52.7
Duzib052G0032 Durio zibethinus HOM05D001012 ORTHO05D006553 8.2e-15 83.6 94 47.9
FAN17G2151 Fragaria x ananassa HOM05D001012 ORTHO05D006553 8.2e-15 83.6 91 51.6
ATR0787G200 Amborella trichopoda HOM05D001012 ORTHO05D006553 1.1e-14 83.2 91 52.7
FvH4_4g05010 Fragaria vesca HOM05D001012 ORTHO05D006553 1.1e-14 83.2 90 52.2
FAN12G4090 Fragaria x ananassa HOM05D001012 ORTHO05D006553 1.1e-14 83.2 90 52.2
Thecc.04G266600 Theobroma cacao HOM05D001012 ORTHO05D006553 1.4e-14 82.8 94 46.8
Cc03_g06470 Coffea canephora HOM05D001012 ORTHO05D006553 2.4e-14 82.0 96 52.1
Duzib151G0254 Durio zibethinus HOM05D001012 ORTHO05D006553 2.4e-14 82.0 94 46.8
ECA247G2191 Erigeron canadensis HOM05D001012 ORTHO05D006553 3.1e-14 81.6 95 48.4
Duzib212G1028 Durio zibethinus HOM05D001012 ORTHO05D006553 4.1e-14 81.3 94 46.8
vmacro08563 Vaccinium macrocarpon HOM05D001012 ORTHO05D006553 5.3e-14 80.9 96 50.0
FAN22G2107 Fragaria x ananassa HOM05D001012 ORTHO05D006553 9.0e-14 80.1 90 50.0
Oeu020134.1 Olea europaea HOM05D001012 ORTHO05D006553 1.5e-13 79.3 86 54.7
Glyma.08G122800 Glycine max HOM05D001012 ORTHO05D006553 2.0e-13 79.0 101 41.6
CSS0001601 Camellia sinensis var. sinensis HOM05D001012 ORTHO05D006553 2.6e-13 78.6 90 53.3
CSS0016929 Camellia sinensis var. sinensis HOM05D001012 ORTHO05D006553 2.6e-13 78.6 90 53.3
MSTRG.24651 Avicennia marina HOM05D001012 ORTHO05D006553 3.4e-13 78.2 97 48.5
MD13G1223300 Malus domestica HOM05D001012 ORTHO05D006553 3.4e-13 78.2 91 50.5
Dinv27122 Davidia involucrata HOM05D001012 ORTHO05D006553 5.9e-13 77.4 90 53.3
Migut.G00561 Erythranthe guttata HOM05D001012 ORTHO05D006553 5.9e-13 77.4 96 50.0
Eucgr.H02904 Eucalyptus grandis HOM05D001012 ORTHO05D006553 5.9e-13 77.4 101 46.5
Glyma.05G165400 Glycine max HOM05D001012 ORTHO05D006553 5.9e-13 77.4 101 43.6
Atru.chr4.1898 Acer truncatum HOM05D001012 ORTHO05D006553 1.0e-12 76.6 99 49.5
Gohir.A02G043500 Gossypium hirsutum HOM05D001012 ORTHO05D006553 1.0e-12 76.6 94 44.7
Gorai.005G054300 Gossypium raimondii HOM05D001012 ORTHO05D006553 1.0e-12 76.6 94 44.7
Prupe.1G050300 Prunus persica HOM05D001012 ORTHO05D006553 1.0e-12 76.6 91 49.5
PGR031G3217 Punica granatum HOM05D001012 ORTHO05D006553 1.3e-12 76.3 101 45.5
PGR118G0004 Punica granatum HOM05D001012 ORTHO05D006553 1.3e-12 76.3 101 45.5
Actinidia27094 Actinidia chinensis HOM05D001012 ORTHO05D006553 1.7e-12 75.9 95 45.3
Ciclev10006525m.g Citrus clementina HOM05D001012 ORTHO05D006553 1.7e-12 75.9 100 45.0
Gohir.D02G049100 Gossypium hirsutum HOM05D001012 ORTHO05D006553 2.2e-12 75.5 94 43.6
MD16G1227600 Malus domestica HOM05D001012 ORTHO05D006553 2.2e-12 75.5 89 49.4
CANSAT78G1811 Cannabis sativa HOM05D001012 ORTHO05D006553 2.9e-12 75.1 97 46.4
Nn3g19798 Nelumbo nucifera HOM05D001012 ORTHO05D006553 2.9e-12 75.1 105 46.7
Potri.010G064800 Populus trichocarpa HOM05D001012 ORTHO05D006553 3.8e-12 74.7 36 91.7
Prupe.6G061400 Prunus persica HOM05D001012 ORTHO05D006553 5.0e-12 74.3 92 47.8
EL10Ac3g06679 Beta vulgaris HOM05D001012 ORTHO05D006553 6.5e-12 73.9 101 47.5
Gohir.A09G231000 Gossypium hirsutum HOM05D001012 ORTHO05D006553 6.5e-12 73.9 94 43.6
Gohir.D09G232100 Gossypium hirsutum HOM05D001012 ORTHO05D006553 6.5e-12 73.9 94 43.6
Gorai.006G254900 Gossypium raimondii HOM05D001012 ORTHO05D006553 6.5e-12 73.9 94 43.6
Phvul.002G245600 Phaseolus vulgaris HOM05D001012 ORTHO05D006553 8.5e-12 73.6 101 42.6
PGR004G0071 Punica granatum HOM05D001012 ORTHO05D006553 1.1e-11 73.2 86 48.8
Aa31LG9G4190 Aethionema arabicum HOM05D001012 ORTHO05D006553 1.4e-11 72.8 36 88.9
BcaB03g16098 Brassica carinata HOM05D001012 ORTHO05D006553 1.4e-11 72.8 36 88.9
BcaB04g17687 Brassica carinata HOM05D001012 ORTHO05D006553 1.4e-11 72.8 36 88.9
BcaC02g09422 Brassica carinata HOM05D001012 ORTHO05D006553 1.4e-11 72.8 36 88.9
C04p42440 Brassica napus HOM05D001012 ORTHO05D006553 1.4e-11 72.8 36 88.9
BolC4t25823H Brassica oleracea HOM05D001012 ORTHO05D006553 1.4e-11 72.8 36 88.9
BraA04t16560Z Brassica rapa HOM05D001012 ORTHO05D006553 1.4e-11 72.8 36 88.9
Carub.0007s2910 Capsella rubella HOM05D001012 ORTHO05D006553 1.4e-11 72.8 36 88.9
MBI10_g16813_MAGBIO Magnolia biondii HOM05D001012 ORTHO05D006553 1.4e-11 72.8 98 43.9
CSS0048740 Camellia sinensis var. sinensis HOM05D001012 ORTHO05D006553 1.9e-11 72.4 96 45.8
BcaC08g44307 Brassica carinata HOM05D001012 ORTHO05D006553 2.5e-11 72.0 96 51.0
A05p16540 Brassica napus HOM05D001012 ORTHO05D006553 2.5e-11 72.0 96 51.0
C06p17310 Brassica napus HOM05D001012 ORTHO05D006553 2.5e-11 72.0 96 51.0
BolC6t36927H Brassica oleracea HOM05D001012 ORTHO05D006553 2.5e-11 72.0 96 51.0
BraA05t20558Z Brassica rapa HOM05D001012 ORTHO05D006553 2.5e-11 72.0 96 51.0
Thhalv10027024m.g Eutrema salsugineum HOM05D001012 ORTHO05D006553 2.5e-11 72.0 100 49.0
Lj4g0004868 Lotus japonicus HOM05D001012 ORTHO05D006553 2.5e-11 72.0 103 39.8
Os10g0463300 Oryza sativa ssp. japonica HOM05D001012 ORTHO05D006553 2.5e-11 72.0 36 88.9
THA.LOC104809104 Tarenaya hassleriana HOM05D001012 ORTHO05D006553 4.2e-11 71.2 36 86.1
Lalb_Chr12g0204701 Lupinus albus HOM05D001012 ORTHO05D006553 5.5e-11 70.9 101 40.6
RcHm_v2.0_Chr5g0068561 Rosa chinensis HOM05D001012 ORTHO05D006553 5.5e-11 70.9 98 49.0
SalBow3G0364 Salvia bowleyana HOM05D001012 ORTHO05D006553 5.5e-11 70.9 99 46.5
SalBow3G3922 Salvia bowleyana HOM05D001012 ORTHO05D006553 5.5e-11 70.9 99 46.5
AL9U10100 Arabidopsis lyrata HOM05D001012 ORTHO05D006553 7.2e-11 70.5 36 86.1
AT4G13450 Arabidopsis thaliana HOM05D001012 ORTHO05D006553 7.2e-11 70.5 36 86.1
VMungo0251G0808 Vigna mungo HOM05D001012 ORTHO05D006553 7.2e-11 70.5 101 39.6
A04p08680 Brassica napus HOM05D001012 ORTHO05D006553 9.4e-11 70.1 36 86.1
AUR62002870 Chenopodium quinoa HOM05D001012 ORTHO05D006553 9.4e-11 70.1 101 46.5
THA.LOC104804645 Tarenaya hassleriana HOM05D001012 ORTHO05D006553 9.4e-11 70.1 36 83.3
GSVIVG01027936001 Vitis vinifera HOM05D001012 ORTHO05D006553 1.2e-10 69.7 36 86.1
CARHR219090 Cardamine hirsuta HOM05D001012 ORTHO05D006553 2.1e-10 68.9 100 46.0
AUR62010734 Chenopodium quinoa HOM05D001012 ORTHO05D006553 2.7e-10 68.6 36 80.6
BcaC07g37362 Brassica carinata HOM05D001012 ORTHO05D006553 3.6e-10 68.2 37 86.5
A08p06800 Brassica napus HOM05D001012 ORTHO05D006553 3.6e-10 68.2 37 86.5
C08p08110 Brassica napus HOM05D001012 ORTHO05D006553 3.6e-10 68.2 37 86.5
BolC8t47664H Brassica oleracea HOM05D001012 ORTHO05D006553 3.6e-10 68.2 37 86.5
BraA08t32698Z Brassica rapa HOM05D001012 ORTHO05D006553 3.6e-10 68.2 37 86.5
Lalb_Chr13g0295511 Lupinus albus HOM05D001012 ORTHO05D006553 4.6e-10 67.8 102 39.2
Manes.03G157600 Manihot esculenta HOM05D001012 ORTHO05D006553 4.6e-10 67.8 36 83.3
TWI09G0136 Tripterygium wilfordii HOM05D001012 ORTHO05D006553 1.0e-09 66.6 36 83.3
EL10Ac5g12825 Beta vulgaris HOM05D001012 ORTHO05D006553 1.8e-09 65.9 36 75.0
Medtr8g088230 Medicago truncatula HOM05D001012 ORTHO05D006553 1.8e-09 65.9 104 39.4
AUR62035225 Chenopodium quinoa HOM05D001012 ORTHO05D006553 2.3e-09 65.5 101 43.6
Lalb_Chr07g0186031 Lupinus albus HOM05D001012 ORTHO05D006553 3.0e-09 65.1 101 38.6
FAN16G2551 Fragaria x ananassa HOM05D001012 ORTHO05D006553 3.9e-09 64.7 101 45.5
FvH4_3g38130 Fragaria vesca HOM05D001012 ORTHO05D006553 6.7e-09 63.9 47 68.1
Psat7g065120 Pisum sativum HOM05D001012 ORTHO05D006553 6.7e-09 63.9 104 40.4
arahy.Tifrunner.gnm1.ann1.G1SBH4 Arachis hypogaea HOM05D001012 ORTHO05D006553 1.1e-08 63.2 97 40.2
arahy.Tifrunner.gnm1.ann1.LF7IV9 Arachis hypogaea HOM05D001012 ORTHO05D006553 1.1e-08 63.2 97 40.2
Atru.chr12.1110 Acer truncatum HOM05D001012 ORTHO05D006553 1.5e-08 62.8 107 44.9
MD03G1076500 Malus domestica HOM05D001012 ORTHO05D006553 1.9e-08 62.4 90 45.6
MD11G1081000 Malus domestica HOM05D001012 ORTHO05D006553 1.9e-08 62.4 100 43.0
FAN21G0806 Fragaria x ananassa HOM05D001012 ORTHO05D006553 3.3e-08 61.6 47 66.0
Ca_17859_v3 Cicer arietinum L. HOM05D001012 ORTHO05D006553 9.7e-08 60.1 101 42.6
Atru.chr4.1087 Acer truncatum HOM05D001012 ORTHO05D006553 2.8e-07 58.5 107 42.1
TWI53G2025 Tripterygium wilfordii HOM05D001012 ORTHO05D006553 3.1e-06 55.1 87 41.4
Sed0006060 Sechium edule HOM05D001012 ORTHO05D002597 5.3e-06 54.3 97 38.1
Ah.04g153780 Amaranthus hybridus HOM05D001012 ORTHO05D006553 6.9e-06 53.9 92 40.2
DCAR_023745 Daucus carota HOM05D001012 ORTHO05D002597 6.9e-06 53.9 94 34.0
BcaC06g31159 Brassica carinata HOM05D001012 ORTHO05D002597 9.1e-06 53.5 35 62.9
BcaC06g31170 Brassica carinata HOM05D001012 ORTHO05D002597 9.1e-06 53.5 35 62.9
A06p42950 Brassica napus HOM05D001012 ORTHO05D002597 9.1e-06 53.5 35 62.9
C07p34070 Brassica napus HOM05D001012 ORTHO05D002597 9.1e-06 53.5 35 62.9
BolC7t43921H Brassica oleracea HOM05D001012 ORTHO05D002597 9.1e-06 53.5 35 62.9
Sp2g14530 Schrenkiella parvula HOM05D001012 ORTHO05D002597 9.1e-06 53.5 35 62.9


User provided reference genes

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