Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0020870 Sechium edule HOM05D004934 ORTHO05D005924 3.8e-55 218.0 117 100.0
ClCG01G011970 Citrullus lanatus HOM05D004934 ORTHO05D005924 2.5e-46 188.7 114 89.5
CsaV3_1G014900 Cucumis sativus L. HOM05D004934 ORTHO05D005924 1.6e-45 186.0 118 87.3
PGR102G3359 Punica granatum HOM05D004934 ORTHO05D005924 6.8e-36 154.1 120 72.5
Thecc.09G281300 Theobroma cacao HOM05D004934 ORTHO05D005924 1.5e-35 152.9 119 70.6
Manes.04G003100 Manihot esculenta HOM05D004934 ORTHO05D005924 2.0e-35 152.5 120 72.5
Cfa010007 Carpinus fangiana HOM05D004934 ORTHO05D005924 5.7e-35 151.0 119 69.7
FvH4_5g26820 Fragaria vesca HOM05D004934 ORTHO05D005924 5.7e-35 151.0 119 72.3
FAN04G2654 Fragaria x ananassa HOM05D004934 ORTHO05D005924 5.7e-35 151.0 119 72.3
FAN13G2036 Fragaria x ananassa HOM05D004934 ORTHO05D005924 2.2e-34 149.1 119 71.4
MD11G1166100 Malus domestica HOM05D004934 ORTHO05D005924 8.3e-34 147.1 115 71.3
Eucgr.B03844 Eucalyptus grandis HOM05D004934 ORTHO05D005924 1.1e-33 146.7 114 71.1
TWI31G0143 Tripterygium wilfordii HOM05D004934 ORTHO05D005924 2.4e-33 145.6 119 68.1
VMungo1127G1656 Vigna mungo HOM05D004934 ORTHO05D005924 5.4e-33 144.4 117 70.9
QL01p012137 Quercus lobata HOM05D004934 ORTHO05D005924 9.2e-33 143.7 118 68.6
Duzib168G1921 Durio zibethinus HOM05D004934 ORTHO05D005924 1.6e-32 142.9 119 68.1
Gohir.D08G015900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 2.0e-32 142.5 119 66.4
Gorai.004G010200 Gossypium raimondii HOM05D004934 ORTHO05D005924 3.5e-32 141.7 119 65.5
Prupe.6G131900 Prunus persica HOM05D004934 ORTHO05D005924 3.5e-32 141.7 119 67.2
Phvul.011G095100 Phaseolus vulgaris HOM05D004934 ORTHO05D005924 4.5e-32 141.4 117 70.1
CiPaw.14G099500 Carya illinoinensis HOM05D004934 ORTHO05D005924 7.8e-32 140.6 119 66.4
Nn2g14177 Nelumbo nucifera HOM05D004934 ORTHO05D005924 7.8e-32 140.6 119 67.2
GSVIVG01036114001 Vitis vinifera HOM05D004934 ORTHO05D005924 7.8e-32 140.6 115 72.2
TAR633G0561 Trochodendron aralioides HOM05D004934 ORTHO05D005924 1.0e-31 140.2 120 70.8
Cc01_g09040 Coffea canephora HOM05D004934 ORTHO05D005924 1.3e-31 139.8 116 69.8
Glyma.12G090500 Glycine max HOM05D004934 ORTHO05D005924 1.7e-31 139.4 117 69.2
Atru.chr3.3218 Acer truncatum HOM05D004934 ORTHO05D005924 3.8e-31 138.3 115 67.0
Actinidia35468 Actinidia chinensis HOM05D004934 ORTHO05D005924 5.0e-31 137.9 121 68.6
RcHm_v2.0_Chr5g0045641 Rosa chinensis HOM05D004934 ORTHO05D005924 5.0e-31 137.9 119 66.4
Aqoxy4G02760 Aquilegia oxysepala HOM05D004934 ORTHO05D005924 8.6e-31 137.1 120 68.3
Hund18761 Selenicereus undatus HOM05D004934 ORTHO05D005924 8.6e-31 137.1 120 67.5
Potri.009G163100 Populus trichocarpa HOM05D004934 ORTHO05D005924 1.1e-30 136.7 122 66.4
Gohir.A08G005600 Gossypium hirsutum HOM05D004934 ORTHO05D005924 1.9e-30 136.0 119 63.9
Sabra04G0136300 Salix brachista HOM05D004934 ORTHO05D005924 1.9e-30 136.0 118 68.6
Glyma.11G182300 Glycine max HOM05D004934 ORTHO05D005924 2.5e-30 135.6 117 68.4
Hma1.2p1_0587F.1_g184270 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 2.5e-30 135.6 116 68.1
Ciclev10029605m.g Citrus clementina HOM05D004934 ORTHO05D005924 4.3e-30 134.8 115 65.2
Dinv22836 Davidia involucrata HOM05D004934 ORTHO05D005924 7.3e-30 134.0 119 68.9
Sabra09G0127300 Salix brachista HOM05D004934 ORTHO05D005924 9.5e-30 133.7 122 66.4
ATR0609G030 Amborella trichopoda HOM05D004934 ORTHO05D005924 1.6e-29 132.9 117 64.1
MSTRG.17705 Avicennia marina HOM05D004934 ORTHO05D005924 1.6e-29 132.9 122 65.6
Dinv42546 Davidia involucrata HOM05D004934 ORTHO05D005924 1.6e-29 132.9 116 66.4
Nitab4.5_0002914g0100 Nicotiana tabacum HOM05D004934 ORTHO05D005924 2.1e-29 132.5 121 66.9
Peaxi162Scf00040g00023 Petunia axillaris HOM05D004934 ORTHO05D005924 2.8e-29 132.1 116 68.1
Lalb_Chr03g0028151 Lupinus albus HOM05D004934 ORTHO05D005924 4.7e-29 131.3 122 66.4
PGSC0003DMG400026356 Solanum tuberosum HOM05D004934 ORTHO05D005924 4.7e-29 131.3 119 65.5
Nitab4.5_0000755g0070 Nicotiana tabacum HOM05D004934 ORTHO05D005924 6.1e-29 131.0 122 64.8
THA.LOC104800543 Tarenaya hassleriana HOM05D004934 ORTHO05D005924 8.0e-29 130.6 116 65.5
Nitab4.5_0000227g0280 Nicotiana tabacum HOM05D004934 ORTHO05D005924 1.4e-28 129.8 120 65.0
Ca_19413_v3 Cicer arietinum L. HOM05D004934 ORTHO05D005924 1.8e-28 129.4 120 66.7
Solyc11g068510.2 Solanum lycopersicum HOM05D004934 ORTHO05D005924 1.8e-28 129.4 116 65.5
Sopen11g027220 Solanum pennellii HOM05D004934 ORTHO05D005924 1.8e-28 129.4 116 65.5
Nitab4.5_0012586g0010 Nicotiana tabacum HOM05D004934 ORTHO05D005924 3.0e-28 128.6 116 65.5
Potri.004G201700 Populus trichocarpa HOM05D004934 ORTHO05D005924 3.0e-28 128.6 116 65.5
CANSAT54G1198 Cannabis sativa HOM05D004934 ORTHO05D005924 4.0e-28 128.3 127 60.6
vmacro14353 Vaccinium macrocarpon HOM05D004934 ORTHO05D005924 4.0e-28 128.3 120 64.2
MD03G1147400 Malus domestica HOM05D004934 ORTHO05D005924 6.8e-28 127.5 112 66.1
arahy.Tifrunner.gnm1.ann1.Q13MWU Arachis hypogaea HOM05D004934 ORTHO05D005924 8.9e-28 127.1 121 65.3
arahy.Tifrunner.gnm1.ann1.Q2H7V9 Arachis hypogaea HOM05D004934 ORTHO05D005924 8.9e-28 127.1 121 65.3
MSTRG.12371 Avicennia marina HOM05D004934 ORTHO05D005924 8.9e-28 127.1 117 63.2
Duzib170G0221 Durio zibethinus HOM05D004934 ORTHO05D005924 1.5e-27 126.3 119 62.2
TPR.G17236 Trifolium pratense HOM05D004934 ORTHO05D005924 2.0e-27 125.9 120 63.3
CSS0038235 Camellia sinensis var. sinensis HOM05D004934 ORTHO05D005924 2.6e-27 125.6 105 74.3
CAN.G1524.5 Capsicum annuum HOM05D004934 ORTHO05D005924 2.6e-27 125.6 118 64.4
Gohir.A09G096200 Gossypium hirsutum HOM05D004934 ORTHO05D005924 2.6e-27 125.6 116 63.8
Lj3g0027260 Lotus japonicus HOM05D004934 ORTHO05D005924 3.4e-27 125.2 117 64.1
EL10Ac7g15830 Beta vulgaris HOM05D004934 ORTHO05D005924 4.4e-27 124.8 121 62.0
Migut.N02487 Erythranthe guttata HOM05D004934 ORTHO05D005924 4.4e-27 124.8 119 63.9
Gohir.D09G095900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 5.8e-27 124.4 116 62.9
RcHm_v2.0_Chr5g0046361 Rosa chinensis HOM05D004934 ORTHO05D005924 9.8e-27 123.6 127 59.8
Sc06g0008770 Simmondsia chinensis HOM05D004934 ORTHO05D005924 9.8e-27 123.6 120 60.8
AUR62036196 Chenopodium quinoa HOM05D004934 ORTHO05D005924 1.3e-26 123.2 117 63.2
AUR62009749 Chenopodium quinoa HOM05D004934 ORTHO05D005924 1.7e-26 122.9 117 63.2
AT2G27730 Arabidopsis thaliana HOM05D004934 ORTHO05D005924 3.7e-26 121.7 112 63.4
ECA233G4139 Erigeron canadensis HOM05D004934 ORTHO05D005924 3.7e-26 121.7 116 62.9
Lsat_1_v5_gn_6_38900 Lactuca sativa HOM05D004934 ORTHO05D005924 4.9e-26 121.3 117 61.5
Medtr4g052910 Medicago truncatula HOM05D004934 ORTHO05D005924 4.9e-26 121.3 122 61.5
Oeu031471.1 Olea europaea HOM05D004934 ORTHO05D005924 1.1e-25 120.2 118 59.3
CARHR120400 Cardamine hirsuta HOM05D004934 ORTHO05D005924 7.0e-25 117.5 110 60.9
AL4G22570 Arabidopsis lyrata HOM05D004934 ORTHO05D005924 9.2e-25 117.1 112 60.7
Lalb_Chr01g0004881 Lupinus albus HOM05D004934 ORTHO05D005924 9.2e-25 117.1 121 60.3
Carub.0004s0847 Capsella rubella HOM05D004934 ORTHO05D005924 1.2e-24 116.7 112 63.4
TAR636G0935 Trochodendron aralioides HOM05D004934 ORTHO05D005924 1.6e-24 116.3 113 59.3
Psat7g187720 Pisum sativum HOM05D004934 ORTHO05D005924 3.5e-24 115.2 119 59.7
HanXRQChr11g0324151 Helianthus annuus HOM05D004934 ORTHO05D005924 6.0e-24 114.4 126 57.9
Zm00001eb369670 Zea mays HOM05D004934 ORTHO05D005924 6.0e-24 114.4 121 59.5
Thhalv10017451m.g Eutrema salsugineum HOM05D004934 ORTHO05D005924 1.3e-23 113.2 112 59.8
Aa31LG5G8260 Aethionema arabicum HOM05D004934 ORTHO05D005924 1.7e-23 112.8 112 55.4
Aqoxy2G01124 Aquilegia oxysepala HOM05D004934 ORTHO05D005924 1.7e-23 112.8 120 60.0
BcaB06g28164 Brassica carinata HOM05D004934 ORTHO05D005924 3.0e-23 112.1 111 57.7
FAN11G2484 Fragaria x ananassa HOM05D004934 ORTHO05D005924 5.0e-23 111.3 118 57.6
unitig_27.g25034 Utricularia gibba HOM05D004934 ORTHO05D005924 5.0e-23 111.3 113 54.0
Lsat_1_v5_gn_2_59421 Lactuca sativa HOM05D004934 ORTHO05D005924 6.6e-23 110.9 116 56.9
Sp4g10520 Schrenkiella parvula HOM05D004934 ORTHO05D005924 6.6e-23 110.9 119 57.1
A07p18350 Brassica napus HOM05D004934 ORTHO05D005924 8.6e-23 110.5 117 55.6
FvH4_3g25100 Fragaria vesca HOM05D004934 ORTHO05D005924 8.6e-23 110.5 118 57.6
Peaxi162Scf00757g00422 Petunia axillaris HOM05D004934 ORTHO05D005924 8.6e-23 110.5 112 61.6
Zm00001eb151060 Zea mays HOM05D004934 ORTHO05D005924 8.6e-23 110.5 119 58.8
BcaC02g08235 Brassica carinata HOM05D004934 ORTHO05D005924 1.1e-22 110.2 117 58.1
C04p56900 Brassica napus HOM05D004934 ORTHO05D005924 1.1e-22 110.2 117 58.1
BolC4t27225H Brassica oleracea HOM05D004934 ORTHO05D005924 1.1e-22 110.2 117 58.1
A04p21090 Brassica napus HOM05D004934 ORTHO05D005924 1.5e-22 109.8 119 57.1
BraA04t17678Z Brassica rapa HOM05D004934 ORTHO05D005924 1.5e-22 109.8 119 57.1
BcaC02g10898 Brassica carinata HOM05D004934 ORTHO05D005924 1.9e-22 109.4 117 56.4
C04p23930 Brassica napus HOM05D004934 ORTHO05D005924 1.9e-22 109.4 117 56.4
BolC4t23886H Brassica oleracea HOM05D004934 ORTHO05D005924 1.9e-22 109.4 117 56.4
HanXRQChr13g0397481 Helianthus annuus HOM05D004934 ORTHO05D005924 1.9e-22 109.4 119 58.8
BraA07t29551Z Brassica rapa HOM05D004934 ORTHO05D005924 4.3e-22 108.2 117 56.4
BcaB02g10110 Brassica carinata HOM05D004934 ORTHO05D005924 1.6e-21 106.3 113 53.1
Rhsim13G0112500 Rhododendron simsii HOM05D004934 ORTHO05D005924 3.6e-21 105.1 152 50.7
MELO3C004698.2 Cucumis melo HOM05D004934 ORTHO05D005924 2.3e-20 102.4 100 60.0
PSO801G0293 Papaver somniferum HOM05D004934 ORTHO05D005924 4.0e-20 101.7 111 55.9
PSO339G6001 Papaver somniferum HOM05D004934 ORTHO05D005924 5.2e-20 101.3 111 55.0
Oeu035567.1 Olea europaea HOM05D004934 ORTHO05D005924 2.0e-19 99.4 117 54.7
SalBow3G2207 Salvia bowleyana HOM05D004934 ORTHO05D005924 2.0e-19 99.4 118 54.2
CDE12G0371 Ceratophyllum demersum HOM05D004622 ORTHO05D005431 2.6e-19 99.0 114 52.6
DCAR_010342 Daucus carota HOM05D004934 ORTHO05D005924 3.4e-19 98.6 85 62.4
SGA_v2.0_scaffold295G47520 Striga asiatica HOM05D004934 ORTHO05D005924 1.3e-18 96.7 120 52.5
BcaC02g10901 Brassica carinata HOM05D004934 ORTHO05D005924 1.4e-17 93.2 104 51.9
Gorai.009G084700 Gossypium raimondii HOM05D004934 ORTHO05D005924 3.2e-17 92.0 82 63.4
SGA_v2.0_scaffold177G39414 Striga asiatica HOM05D004934 ORTHO05D005924 3.2e-17 92.0 122 52.5
FAN25G2937 Fragaria x ananassa HOM05D004934 ORTHO05D005924 4.1e-17 91.7 86 60.5
Cpa.g.sc32.36 Carica papaya HOM05D004934 ORTHO05D005924 5.4e-17 91.3 76 67.1
PSO339G2388 Papaver somniferum HOM05D004934 ORTHO05D005924 7.0e-17 90.9 105 56.2
PSO384G4162 Papaver somniferum HOM05D004934 ORTHO05D005924 7.0e-17 90.9 105 55.2
Gohir.D05G082900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 1.2e-16 90.1 82 62.2
Gohir.A05G080000 Gossypium hirsutum HOM05D004934 ORTHO05D005924 7.8e-16 87.4 82 61.0
CDE04G1608 Ceratophyllum demersum HOM05D004934 ORTHO05D005924 1.7e-15 86.3 122 45.9
Os08g0559000 Oryza sativa ssp. japonica HOM05D004934 ORTHO05D005924 2.3e-15 85.9 117 51.3
HPP92_003219 Vanilla planifolia HOM05D004934 ORTHO05D005924 5.6e-14 81.3 83 60.2
MBI05_g05303_MAGBIO Magnolia biondii HOM05D004934 ORTHO05D005924 9.5e-14 80.5 122 49.2
Zm00001eb343400 Zea mays HOM05D004934 ORTHO05D005924 1.2e-13 80.1 86 54.7
ECA238G4733 Erigeron canadensis HOM05D004934 ORTHO05D005924 1.6e-13 79.7 119 49.6
Zm00001eb416000 Zea mays HOM05D004934 ORTHO05D005924 3.6e-13 78.6 86 54.7
FAN21G3762 Fragaria x ananassa HOM05D004934 ORTHO05D005924 4.7e-13 78.2 83 62.7
Pp3c1_22500 Physcomitrium patens HOM05D004934 ORTHO05D005924 4.7e-13 78.2 116 47.4
DCAR_030570 Daucus carota HOM05D004934 ORTHO05D005924 6.2e-13 77.8 66 71.2
Os09g0568900 Oryza sativa ssp. japonica HOM05D004934 ORTHO05D005924 1.8e-12 76.3 85 55.3
Hma1.2p1_0587F.1_g184260 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 5.2e-12 74.7 70 62.9
Hma1.2p1_3516F.1_g336514 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 5.2e-12 74.7 70 62.9
Nn6g34871 Nelumbo nucifera HOM05D004934 ORTHO05D005924 6.8e-12 74.3 55 76.4
Hma1.2p1_0413F.1_g147325 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 9.9e-11 70.5 71 59.2
vmacro03322 Vaccinium macrocarpon HOM05D004934 ORTHO05D005924 2.2e-10 69.3 197 36.0
AagrBONN_evm.TU.Sc2ySwM_228.2259 Anthoceros agrestis HOM05D004934 ORTHO05D005924 1.2e-08 63.5 115 41.7
Pp3c14_2790 Physcomitrium patens HOM05D004934 ORTHO05D005924 1.3e-07 60.1 111 40.5
SEGI_07969 Sequoiadendron giganteum HOM05D004934 ORTHO05D005924 6.6e-07 57.8 43 72.1
FAN03G1835 Fragaria x ananassa HOM05D007506 ORTHO05D008409 7.3e-06 54.3 68 47.1


User provided reference genes

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