Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0020853 Sechium edule HOM05D004628 ORTHO05D005166 0.0e+00 1473.4 883 100.0
ClCG10G009980 Citrullus lanatus HOM05D004628 ORTHO05D005166 1.3e-187 661.0 947 55.8
CsaV3_4G000030 Cucumis sativus L. HOM05D004628 ORTHO05D005166 6.4e-171 605.5 937 51.4
MELO3C018028.2 Cucumis melo HOM05D004628 ORTHO05D005166 1.9e-159 567.4 938 51.2
QL11p028919 Quercus lobata HOM05D004628 ORTHO05D005166 6.2e-81 306.6 961 34.1
QL93p0138_0014 Quercus lobata HOM05D004628 ORTHO05D005166 5.2e-80 303.5 955 34.5
CiPaw.06G163200 Carya illinoinensis HOM05D004628 ORTHO05D005166 5.4e-69 266.9 994 33.3
Atru.chr5.2254 Acer truncatum HOM05D004628 ORTHO05D005166 3.9e-67 260.8 941 34.9
Prupe.8G151700 Prunus persica HOM05D004628 ORTHO05D005166 6.6e-67 260.0 945 36.6
Hma1.2p1_1051F.1_g252220 Hydrangea macrophylla HOM05D004628 ORTHO05D005166 8.9e-64 249.6 911 32.3
Duzib132G0942 Durio zibethinus HOM05D004628 ORTHO05D005166 1.5e-63 248.8 951 32.8
Sabra09G0065100 Salix brachista HOM05D004628 ORTHO05D005166 1.3e-62 245.7 959 30.8
Thecc.02G121000 Theobroma cacao HOM05D004628 ORTHO05D005166 1.1e-61 242.7 941 32.8
Potri.009G084400 Populus trichocarpa HOM05D004628 ORTHO05D005166 1.6e-60 238.8 958 30.7
Gohir.A03G180400 Gossypium hirsutum HOM05D004628 ORTHO05D005166 4.6e-60 237.3 947 31.6
Gorai.005G229300 Gossypium raimondii HOM05D004628 ORTHO05D005166 5.1e-59 233.8 925 34.3
COL.COLO4_32472 Corchorus olitorius HOM05D004628 ORTHO05D005166 5.6e-58 230.3 922 34.9
Dinv16065 Davidia involucrata HOM05D004628 ORTHO05D005166 9.6e-58 229.6 910 30.4
Cfa004712 Carpinus fangiana HOM05D004628 ORTHO05D005166 3.6e-57 227.6 969 33.6
Gohir.D02G203066 Gossypium hirsutum HOM05D004628 ORTHO05D005166 4.8e-57 227.3 917 34.4
Ciclev10027822m.g Citrus clementina HOM05D004628 ORTHO05D005166 1.8e-56 225.3 918 31.7
Lj5A222T77 Lonicera japonica HOM05D004628 ORTHO05D005166 1.2e-55 222.6 922 29.6
CSS0024832 Camellia sinensis var. sinensis HOM05D004628 ORTHO05D005166 4.9e-54 217.2 912 30.4
TWI14G1143 Tripterygium wilfordii HOM05D004628 ORTHO05D005166 3.5e-52 211.1 931 29.4
Glyma.17G013400 Glycine max HOM05D004628 ORTHO05D005166 1.3e-51 209.1 914 30.9
FAN24G0611 Fragaria x ananassa HOM05D004628 ORTHO05D005166 2.5e-50 204.9 942 31.0
FvH4_2g03070 Fragaria vesca HOM05D004628 ORTHO05D005166 2.8e-49 201.4 942 30.8
Manes.10G088200 Manihot esculenta HOM05D004628 ORTHO05D005166 6.2e-49 200.3 922 31.2
Lj4g0013789 Lotus japonicus HOM05D004628 ORTHO05D005166 8.1e-49 199.9 941 31.2
TAR381G0961 Trochodendron aralioides HOM05D004628 ORTHO05D005166 8.1e-49 199.9 909 28.3
RcHm_v2.0_Chr6g0247921 Rosa chinensis HOM05D004628 ORTHO05D005166 6.9e-48 196.8 918 32.2
Dinv09529 Davidia involucrata HOM05D004628 ORTHO05D005166 1.5e-47 195.7 963 31.9
vmacro22260 Vaccinium macrocarpon HOM05D004628 ORTHO05D005166 7.6e-47 193.4 943 28.6
FAN20G2820 Fragaria x ananassa HOM05D004628 ORTHO05D005166 2.2e-46 191.8 945 29.7
FAN27G1701 Fragaria x ananassa HOM05D004628 ORTHO05D005166 3.8e-46 191.0 958 29.9
Rhsim05G0093300 Rhododendron simsii HOM05D004628 ORTHO05D005166 3.8e-46 191.0 919 33.2
PGR142G3374 Punica granatum HOM05D004628 ORTHO05D005166 4.9e-46 190.7 943 30.8
VMungo1215G2063 Vigna mungo HOM05D004628 ORTHO05D005166 1.9e-45 188.7 927 29.4
MSTRG.16666 Avicennia marina HOM05D004628 ORTHO05D005166 2.4e-45 188.3 927 31.7
FAN15G3289 Fragaria x ananassa HOM05D004628 ORTHO05D005166 3.2e-45 188.0 935 29.4
Phvul.003G078900 Phaseolus vulgaris HOM05D004628 ORTHO05D005166 2.1e-44 185.3 937 33.9
Manes.07G052400 Manihot esculenta HOM05D004628 ORTHO05D005166 2.7e-44 184.9 897 30.3
Gohir.A13G048100 Gossypium hirsutum HOM05D004628 ORTHO05D005166 3.5e-44 184.5 466 34.5
Glyma.07G260600 Glycine max HOM05D004628 ORTHO05D005166 4.6e-44 184.1 929 29.3
Actinidia28002 Actinidia chinensis HOM05D004628 ORTHO05D006160 1.0e-43 183.0 353 41.6
TAR628G0237 Trochodendron aralioides HOM05D004628 ORTHO05D005166 3.9e-43 181.0 915 28.7
TPR.G37037 Trifolium pratense HOM05D004628 ORTHO05D005166 1.1e-42 179.5 897 30.0
arahy.Tifrunner.gnm1.ann1.R9786Y Arachis hypogaea HOM05D004628 ORTHO05D005166 1.5e-42 179.1 982 27.9
Nn6g32057 Nelumbo nucifera HOM05D004628 ORTHO05D005166 2.5e-42 178.3 915 28.2
AUR62027031 Chenopodium quinoa HOM05D004628 ORTHO05D005166 9.6e-42 176.4 905 28.5
Gorai.013G052200 Gossypium raimondii HOM05D004628 ORTHO05D005166 9.6e-42 176.4 458 34.5
Sabra16G0180900 Salix brachista HOM05D004628 ORTHO05D005166 9.6e-42 176.4 998 29.2
Cpa.g.sc106.25 Carica papaya HOM05D004628 ORTHO05D005166 1.3e-41 176.0 892 28.9
AUR62030875 Chenopodium quinoa HOM05D004628 ORTHO05D005166 1.3e-41 176.0 897 30.2
Gohir.D13G046500 Gossypium hirsutum HOM05D004628 ORTHO05D005166 1.6e-41 175.6 458 34.5
Lalb_Chr15g0087631 Lupinus albus HOM05D004628 ORTHO05D005166 3.7e-41 174.5 522 32.8
Oeu037295.1 Olea europaea HOM05D004628 ORTHO05D005166 8.1e-41 173.3 919 31.0
Medtr4g132160 Medicago truncatula HOM05D004628 ORTHO05D005166 1.8e-40 172.2 942 29.2
Cc02_g20190 Coffea canephora HOM05D004628 ORTHO05D005166 7.6e-39 166.8 935 27.6
Lalb_Chr18g0056371 Lupinus albus HOM05D004628 ORTHO05D005166 1.0e-38 166.4 960 28.1
Ca_21082_v3 Cicer arietinum L. HOM05D004628 ORTHO05D005166 9.3e-37 159.8 948 27.4
Eucgr.B01419 Eucalyptus grandis HOM05D004628 ORTHO05D005166 1.6e-36 159.1 917 29.8
arahy.Tifrunner.gnm1.ann1.L5X8FN Arachis hypogaea HOM05D004628 ORTHO05D005166 4.6e-36 157.5 943 28.1
Sc08g0004290 Simmondsia chinensis HOM05D004628 ORTHO05D005166 1.3e-35 156.0 347 39.2
GSVIVG01037037001 Vitis vinifera HOM05D004628 ORTHO05D005166 3.0e-35 154.8 171 54.4
Hund00415 Selenicereus undatus HOM05D004628 ORTHO05D005166 7.4e-34 150.2 950 26.4
Haze_10333 Corylus avellana HOM05D004628 ORTHO05D005166 2.1e-33 148.7 936 31.4
SalBow6G1764 Salvia bowleyana HOM05D004628 ORTHO05D005166 1.8e-32 145.6 930 26.9
Ah.01g024550 Amaranthus hybridus HOM05D004628 ORTHO05D005166 6.9e-32 143.7 902 25.9
SalBow6G5308 Salvia bowleyana HOM05D004628 ORTHO05D005166 9.0e-32 143.3 930 26.5
Potri.001G289100 Populus trichocarpa HOM05D004628 ORTHO05D005166 1.2e-31 142.9 837 31.7
Ah.01g007160 Amaranthus hybridus HOM05D004628 ORTHO05D005166 1.5e-31 142.5 558 29.2
PGSC0003DMG400001291 Solanum tuberosum HOM05D004628 ORTHO05D005166 1.5e-31 142.5 934 27.3
Solyc01g106750.2 Solanum lycopersicum HOM05D004628 ORTHO05D005166 4.5e-31 141.0 924 29.1
DCAR_021936 Daucus carota HOM05D004628 ORTHO05D005166 1.0e-30 139.8 1043 28.2
Migut.B00478 Erythranthe guttata HOM05D004628 ORTHO05D005166 1.3e-30 139.4 926 28.2
Aqoxy6G01519 Aquilegia oxysepala HOM05D004628 ORTHO05D005166 1.7e-30 139.0 928 27.2
SGA_v2.0_scaffold32G12978 Striga asiatica HOM05D004628 ORTHO05D005166 1.4e-29 136.0 918 27.7
arahy.Tifrunner.gnm1.ann1.V3P7C9 Arachis hypogaea HOM05D000513 ORTHO05D005786 1.9e-29 135.6 927 27.5
Prupe.8G151500 Prunus persica HOM05D004628 ORTHO05D005166 1.9e-29 135.6 323 37.5
Sopen01g049070 Solanum pennellii HOM05D004628 ORTHO05D005166 1.9e-29 135.6 926 28.3
Psat4g006640 Pisum sativum HOM05D004628 ORTHO05D005166 2.5e-29 135.2 1012 27.7
arahy.Tifrunner.gnm1.ann1.EFUN8Y Arachis hypogaea HOM05D004628 ORTHO05D005166 9.3e-29 133.3 922 27.4
Nitab4.5_0010657g0040 Nicotiana tabacum HOM05D004628 ORTHO05D005166 9.3e-29 133.3 930 31.0
CARHR106490 Cardamine hirsuta HOM05D004628 ORTHO05D005166 3.3e-26 124.8 900 26.1
PSO210G3573 Papaver somniferum HOM05D004628 ORTHO05D005166 9.7e-26 123.2 953 26.8
Nitab4.5_0000772g0030 Nicotiana tabacum HOM05D004628 ORTHO05D005166 2.8e-25 121.7 943 29.1
Lsat_1_v5_gn_5_111860 Lactuca sativa HOM05D004628 ORTHO05D005166 4.8e-25 120.9 492 30.7
AT2G16270 Arabidopsis thaliana HOM05D004628 ORTHO05D005166 1.1e-24 119.8 906 27.7
CARHR017100 Cardamine hirsuta HOM05D004628 ORTHO05D005166 1.1e-24 119.8 491 29.3
HanXRQChr04g0101671 Helianthus annuus HOM05D004628 ORTHO05D005166 5.3e-24 117.5 898 25.7
SGA_v2.0_scaffold519G52683 Striga asiatica HOM05D004628 ORTHO05D005166 1.2e-23 116.3 966 27.0
PSO447G0365 Papaver somniferum HOM05D004628 ORTHO05D005166 1.5e-23 115.9 957 26.1
Aa31LG8G13660 Aethionema arabicum HOM05D004628 ORTHO05D005166 4.5e-23 114.4 920 26.7
THA.LOC104819526 Tarenaya hassleriana HOM05D004628 ORTHO05D005166 4.5e-23 114.4 951 25.7
ECA234G3304 Erigeron canadensis HOM05D004628 ORTHO05D005166 5.9e-23 114.0 577 29.6
Peaxi162Scf00016g03244 Petunia axillaris HOM05D004628 ORTHO05D005166 5.9e-23 114.0 967 28.5
AL3G52350 Arabidopsis lyrata HOM05D004628 ORTHO05D005166 1.7e-22 112.5 899 25.0
Psat6g212600 Pisum sativum HOM05D004628 ORTHO05D005166 1.4e-21 109.4 272 33.8
MBI16_g18399_MAGBIO Magnolia biondii HOM05D004628 ORTHO05D005166 7.2e-21 107.1 706 28.8
BraA07t28247Z Brassica rapa HOM05D004628 ORTHO05D005166 1.8e-19 102.4 898 24.5
A07p04590 Brassica napus HOM05D004628 ORTHO05D005166 3.9e-19 101.3 903 25.6
Carub.0003s2996 Capsella rubella HOM05D004628 ORTHO05D005166 9.7e-18 96.7 921 26.8
EL10Ac4g09112 Beta vulgaris HOM05D004628 ORTHO05D005166 3.7e-17 94.7 945 27.7
Thhalv10006806m.g Eutrema salsugineum HOM05D004628 ORTHO05D005166 3.1e-16 91.7 923 25.5
Carub.0001s1637 Capsella rubella HOM05D004628 ORTHO05D005166 6.9e-16 90.5 930 26.0
AT1G16630 Arabidopsis thaliana HOM05D004628 ORTHO05D005166 1.2e-15 89.7 936 25.5
arahy.Tifrunner.gnm1.ann1.53VTV0 Arachis hypogaea HOM05D004628 ORTHO05D005166 2.0e-15 89.0 327 31.5
CAN.G289.65 Capsicum annuum HOM05D004628 ORTHO05D005166 5.9e-15 87.4 209 37.3
Sp3g29460 Schrenkiella parvula HOM05D004628 ORTHO05D005166 7.7e-15 87.0 975 25.8
CAN.G411.101 Capsicum annuum HOM05D002370 ORTHO05D005166 1.0e-14 86.7 434 30.2
unitig_60.g25465 Utricularia gibba HOM05D004628 ORTHO05D005166 1.4e-13 82.8 932 23.4
C07p07410 Brassica napus HOM05D004628 ORTHO05D005166 1.9e-13 82.4 907 24.4
Thhalv10022556m.g Eutrema salsugineum HOM05D004628 ORTHO05D005166 4.2e-13 81.3 960 25.0
BolC7t41157H Brassica oleracea HOM05D004628 ORTHO05D005166 9.4e-13 80.1 910 24.4
AL1G28790 Arabidopsis lyrata HOM05D004628 ORTHO05D005166 3.6e-12 78.2 945 26.0
Lsat_1_v5_gn_5_129280 Lactuca sativa HOM05D004628 ORTHO05D005166 3.6e-12 78.2 282 31.9
CAN.G289.56 Capsicum annuum HOM05D004628 ORTHO05D005166 2.3e-11 75.5 317 30.9
A06p12620 Brassica napus HOM05D004628 ORTHO05D005166 3.9e-11 74.7 970 23.6
Psat5g077040 Pisum sativum HOM05D004628 ORTHO05D005166 1.1e-10 73.2 133 44.4
SEGI_16491 Sequoiadendron giganteum HOM05D004628 ORTHO05D005166 1.1e-10 73.2 359 30.6
BcaC06g36138 Brassica carinata HOM05D004628 ORTHO05D005166 1.7e-09 69.3 907 23.4
BolC5t30206H Brassica oleracea HOM05D004628 ORTHO05D005166 2.2e-09 68.9 931 26.6
CAN.G535.2 Capsicum annuum HOM05D004628 ORTHO05D005166 2.2e-09 68.9 124 46.0
arahy.Tifrunner.gnm1.ann1.GD5ZZG Arachis hypogaea HOM05D004628 ORTHO05D005166 3.7e-09 68.2 264 29.2
Nn5g30859 Nelumbo nucifera HOM05D004628 ORTHO05D005166 3.7e-09 68.2 210 32.9
Sp1g14770 Schrenkiella parvula HOM05D004628 ORTHO05D005166 3.7e-09 68.2 949 25.7
Psat0ss6263g0240 Pisum sativum HOM05D004165 ORTHO05D005166 6.3e-09 67.4 72 56.9
Atru.chr1.1899 Acer truncatum HOM05D004628 ORTHO05D005166 1.4e-08 66.2 101 48.5
Duzib132G1149 Durio zibethinus HOM05D004628 ORTHO05D005166 3.1e-08 65.1 310 30.6
Nitab4.5_0008331g0010 Nicotiana tabacum HOM05D004628 ORTHO05D005166 7.0e-08 63.9 88 50.0
GSVIVG01037038001 Vitis vinifera HOM05D004628 ORTHO05D005166 7.0e-08 63.9 76 59.2
VMungo1215G3006 Vigna mungo HOM05D004628 ORTHO05D005166 2.6e-07 62.0 82 52.4
CAN.G289.55 Capsicum annuum HOM05D004628 ORTHO05D005166 5.9e-07 60.8 282 31.6
CAN.G289.57 Capsicum annuum HOM05D004628 ORTHO05D005166 1.0e-06 60.1 122 40.2
BraA06t24423Z Brassica rapa HOM05D004628 ORTHO05D005166 1.7e-06 59.3 974 22.9


User provided reference genes

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