Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0020846 Sechium edule HOM05D004605 ORTHO05D005804 8.5e-145 516.9 250 100.0
ClCG07G016040 Citrullus lanatus HOM05D004605 ORTHO05D005804 1.8e-118 429.5 221 92.8
CsaV3_4G010080 Cucumis sativus L. HOM05D004605 ORTHO05D005804 4.4e-117 424.9 223 91.0
MELO3C026298.2 Cucumis melo HOM05D004605 ORTHO05D005804 6.4e-116 421.0 219 91.8
Actinidia26268 Actinidia chinensis HOM05D004605 ORTHO05D005804 3.6e-95 352.1 218 72.9
Oeu031839.1 Olea europaea HOM05D004605 ORTHO05D005804 1.2e-93 347.1 216 73.6
GSVIVG01036547001 Vitis vinifera HOM05D004605 ORTHO05D005804 1.2e-93 347.1 242 67.8
Hma1.2p1_0474F.1_g160750 Hydrangea macrophylla HOM05D004605 ORTHO05D005804 2.6e-93 345.9 220 72.7
Atru.chr8.648 Acer truncatum HOM05D004605 ORTHO05D005804 7.6e-93 344.4 214 75.2
Cpa.g.sc14.228 Carica papaya HOM05D004605 ORTHO05D005804 1.3e-92 343.6 219 72.6
COL.COLO4_10258 Corchorus olitorius HOM05D004605 ORTHO05D005804 1.7e-92 343.2 219 72.1
TAR629G2115 Trochodendron aralioides HOM05D004605 ORTHO05D005804 1.7e-92 343.2 216 73.1
Ciclev10012619m.g Citrus clementina HOM05D004605 ORTHO05D005804 2.2e-92 342.8 228 70.6
PSO675G6317 Papaver somniferum HOM05D004605 ORTHO05D005804 2.9e-92 342.4 205 76.6
Thecc.04G106100 Theobroma cacao HOM05D004605 ORTHO05D005804 4.9e-92 341.7 221 73.3
Potri.017G100000 Populus trichocarpa HOM05D004605 ORTHO05D005804 1.9e-91 339.7 237 68.4
Sabra17G0086200 Salix brachista HOM05D004605 ORTHO05D005804 4.1e-91 338.6 229 69.9
Gohir.D07G186600 Gossypium hirsutum HOM05D004605 ORTHO05D005804 5.4e-91 338.2 220 73.2
Gorai.001G207200 Gossypium raimondii HOM05D004605 ORTHO05D005804 5.4e-91 338.2 220 73.2
Lju361C6G5 Lonicera japonica HOM05D004605 ORTHO05D005804 5.4e-91 338.2 216 71.8
PSO732G0027 Papaver somniferum HOM05D004605 ORTHO05D005804 1.2e-90 337.0 205 75.1
Haze_14382 Corylus avellana HOM05D004605 ORTHO05D005804 2.7e-90 335.9 216 71.3
Cfa007695 Carpinus fangiana HOM05D004605 ORTHO05D005804 4.6e-90 335.1 220 69.5
Duzib133G0947 Durio zibethinus HOM05D004605 ORTHO05D005804 1.0e-89 334.0 223 70.9
Lj1g0025970 Lotus japonicus HOM05D004605 ORTHO05D005804 1.3e-89 333.6 206 73.8
SGA_v2.0_scaffold148G36445 Striga asiatica HOM05D004605 ORTHO05D005804 1.3e-89 333.6 226 67.3
Glyma.18G273900 Glycine max HOM05D004605 ORTHO05D005804 1.7e-89 333.2 210 71.9
Gohir.A07G179800 Gossypium hirsutum HOM05D004605 ORTHO05D005804 2.3e-89 332.8 220 71.8
Medtr7g016650 Medicago truncatula HOM05D004605 ORTHO05D005804 2.3e-89 332.8 220 69.5
arahy.Tifrunner.gnm1.ann1.90K79T Arachis hypogaea HOM05D004605 ORTHO05D005804 3.0e-89 332.4 210 71.0
arahy.Tifrunner.gnm1.ann1.M6S7AL Arachis hypogaea HOM05D004605 ORTHO05D005804 3.0e-89 332.4 210 70.5
Manes.01G103400 Manihot esculenta HOM05D004605 ORTHO05D005804 3.0e-89 332.4 213 71.4
CANSAT64G2231 Cannabis sativa HOM05D004605 ORTHO05D005804 6.6e-89 331.3 217 71.9
Rhsim08G0077200 Rhododendron simsii HOM05D004605 ORTHO05D005804 6.6e-89 331.3 216 73.1
QL02p065873 Quercus lobata HOM05D004605 ORTHO05D005804 8.6e-89 330.9 214 70.6
Migut.H00587 Erythranthe guttata HOM05D004605 ORTHO05D005804 1.1e-88 330.5 227 66.5
VMungo1383G2960 Vigna mungo HOM05D004605 ORTHO05D005804 1.5e-88 330.1 210 71.4
Phvul.008G027000 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 1.9e-88 329.7 210 70.0
TWI60G1007 Tripterygium wilfordii HOM05D004605 ORTHO05D005804 3.3e-88 328.9 221 70.6
Aqoxy3G03715 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 4.3e-88 328.6 222 68.9
Duzib138G1714 Durio zibethinus HOM05D004605 ORTHO05D005804 4.3e-88 328.6 220 70.9
Manes.02G059400 Manihot esculenta HOM05D004605 ORTHO05D005804 4.3e-88 328.6 219 68.9
Glyma.08G251200 Glycine max HOM05D004605 ORTHO05D005804 7.3e-88 327.8 206 72.8
Phvul.008G026800 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 7.3e-88 327.8 210 70.5
Peaxi162Scf00020g10235 Petunia axillaris HOM05D004605 ORTHO05D005804 2.8e-87 325.9 219 67.6
Hund16233 Selenicereus undatus HOM05D004605 ORTHO05D005804 1.8e-86 323.2 221 69.2
Solyc02g089230.3 Solanum lycopersicum HOM05D004605 ORTHO05D005804 4.0e-86 322.0 228 64.5
Sopen02g034020 Solanum pennellii HOM05D004605 ORTHO05D005804 6.9e-86 321.2 208 68.8
Lalb_Chr10g0092731 Lupinus albus HOM05D004605 ORTHO05D005804 8.9e-86 320.9 216 69.0
Nitab4.5_0007530g0010 Nicotiana tabacum HOM05D004605 ORTHO05D005804 1.5e-85 320.1 208 68.8
SalBow1G3999 Salvia bowleyana HOM05D004605 ORTHO05D005804 1.5e-85 320.1 211 68.7
Phvul.008G027600 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 2.0e-85 319.7 210 69.5
PGSC0003DMG400001379 Solanum tuberosum HOM05D004605 ORTHO05D005804 2.6e-85 319.3 208 67.8
TPR.G23408 Trifolium pratense HOM05D004605 ORTHO05D005804 3.4e-85 318.9 210 69.5
CSS0024904 Camellia sinensis var. sinensis HOM05D004605 ORTHO05D005804 4.4e-85 318.5 217 65.4
Aqoxy3G03716 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 1.3e-84 317.0 221 67.4
BraA07t29690Z Brassica rapa HOM05D004605 ORTHO05D005804 1.7e-84 316.6 219 68.0
C06p18440 Brassica napus HOM05D004605 ORTHO05D005804 2.2e-84 316.2 219 68.5
HanXRQChr14g0452481 Helianthus annuus HOM05D004605 ORTHO05D005804 2.2e-84 316.2 221 65.6
VMungo1383G3490 Vigna mungo HOM05D004605 ORTHO05D005804 2.9e-84 315.8 210 68.6
Nitab4.5_0001339g0150 Nicotiana tabacum HOM05D004605 ORTHO05D005804 3.8e-84 315.5 208 67.8
A07p19860 Brassica napus HOM05D004605 ORTHO05D005804 4.9e-84 315.1 219 67.6
CiPaw.03G083100 Carya illinoinensis HOM05D004605 ORTHO05D005804 6.4e-84 314.7 219 67.6
BcaC08g44406 Brassica carinata HOM05D004605 ORTHO05D005804 1.1e-83 313.9 219 68.0
BolC6t37056H Brassica oleracea HOM05D004605 ORTHO05D005804 1.1e-83 313.9 219 68.0
BcaB02g07994 Brassica carinata HOM05D004605 ORTHO05D005804 1.9e-83 313.2 219 67.1
Ca_06902_v3 Cicer arietinum L. HOM05D004605 ORTHO05D005804 2.4e-83 312.8 206 68.4
DCAR_021425 Daucus carota HOM05D004605 ORTHO05D005804 2.4e-83 312.8 216 67.6
ECA238G2860 Erigeron canadensis HOM05D004605 ORTHO05D005804 2.4e-83 312.8 209 69.4
CAN.G497.71 Capsicum annuum HOM05D004605 ORTHO05D005804 3.2e-83 312.4 208 67.3
Aa31LG9G16810 Aethionema arabicum HOM05D004605 ORTHO05D005804 4.2e-83 312.0 216 67.6
Aqoxy3G03714 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 4.2e-83 312.0 222 64.0
CiPaw.03G083000 Carya illinoinensis HOM05D004605 ORTHO05D005804 1.2e-82 310.5 218 63.8
Lsat_1_v5_gn_2_90241 Lactuca sativa HOM05D004605 ORTHO05D005804 1.2e-82 310.5 219 65.8
MSTRG.15437 Avicennia marina HOM05D004605 ORTHO05D005804 1.6e-82 310.1 214 66.8
THA.LOC104805526 Tarenaya hassleriana HOM05D004605 ORTHO05D005804 1.6e-82 310.1 205 68.8
Psat3g203400 Pisum sativum HOM05D004605 ORTHO05D005804 3.5e-82 308.9 213 67.1
FvH4_6g46390 Fragaria vesca HOM05D004605 ORTHO05D005804 4.6e-82 308.5 221 65.6
Carub.0007s3694 Capsella rubella HOM05D004605 ORTHO05D005804 6.0e-82 308.1 217 67.3
Thhalv10027927m.g Eutrema salsugineum HOM05D004605 ORTHO05D005804 6.0e-82 308.1 216 66.7
Prupe.3G249100 Prunus persica HOM05D004605 ORTHO05D005804 6.0e-82 308.1 210 69.5
MD17G1065700 Malus domestica HOM05D004605 ORTHO05D005804 3.9e-81 305.4 231 64.9
MD09G1074300 Malus domestica HOM05D004605 ORTHO05D005804 1.9e-80 303.1 210 68.6
RcHm_v2.0_Chr2g0164921 Rosa chinensis HOM05D004605 ORTHO05D005804 1.9e-80 303.1 221 64.7
AL7G51520 Arabidopsis lyrata HOM05D004605 ORTHO05D005804 7.3e-80 301.2 216 64.8
CARHR263630 Cardamine hirsuta HOM05D004605 ORTHO05D005804 7.3e-80 301.2 205 67.8
Sp7g03000 Schrenkiella parvula HOM05D004605 ORTHO05D005804 9.6e-80 300.8 217 64.5
AT5G38900 Arabidopsis thaliana HOM05D004605 ORTHO05D005804 1.6e-79 300.1 216 65.7
FAN05G4053 Fragaria x ananassa HOM05D004605 ORTHO05D005804 1.6e-79 300.1 229 61.6
Eucgr.I02062 Eucalyptus grandis HOM05D004605 ORTHO05D005804 3.6e-79 298.9 246 60.2
Os03g0598900 Oryza sativa ssp. japonica HOM05D004605 ORTHO05D005804 1.1e-78 297.4 235 61.3
Zm00001eb219300 Zea mays HOM05D004605 ORTHO05D005804 9.9e-77 290.8 225 60.9
MSTRG.15436 Avicennia marina HOM05D004605 ORTHO05D005804 2.2e-76 289.7 190 68.4
EL10Ac2g04442 Beta vulgaris HOM05D004605 ORTHO05D005804 1.4e-75 287.0 219 61.6
Zm00001eb049940 Zea mays HOM05D004605 ORTHO05D005804 3.5e-74 282.3 208 63.0
Prupe.3G249000 Prunus persica HOM05D004605 ORTHO05D005804 1.8e-73 280.0 209 58.9
FAN14G2038 Fragaria x ananassa HOM05D004605 ORTHO05D005804 2.5e-72 276.2 195 65.1
vmacro18128 Vaccinium macrocarpon HOM05D004605 ORTHO05D005804 2.5e-72 276.2 196 66.8
HPP92_012260 Vanilla planifolia HOM05D004605 ORTHO05D005804 5.6e-72 275.0 209 61.7
AUR62023160 Chenopodium quinoa HOM05D004605 ORTHO05D005804 2.8e-71 272.7 208 63.9
MBI16_g34534_MAGBIO Magnolia biondii HOM05D004605 ORTHO05D005804 2.0e-69 266.5 214 61.7
ATR0827G055 Amborella trichopoda HOM05D004605 ORTHO05D005804 4.5e-69 265.4 232 55.2
Eucgr.B03744 Eucalyptus grandis HOM05D004605 ORTHO05D005804 1.7e-68 263.5 195 62.6
Sc10g0000600 Simmondsia chinensis HOM05D004605 ORTHO05D005804 2.2e-68 263.1 179 68.2
arahy.Tifrunner.gnm1.ann1.XASR8W Arachis hypogaea HOM05D004605 ORTHO05D005804 6.0e-66 255.0 199 59.8
Eucgr.L00721 Eucalyptus grandis HOM05D004605 ORTHO05D005804 3.9e-65 252.3 195 61.0
SMO223G0030 Selaginella moellendorffii HOM05D004605 ORTHO05D005804 6.7e-65 251.5 204 56.9
Mapoly0001s0057 Marchantia polymorpha HOM05D004605 ORTHO05D005804 1.1e-64 250.8 210 54.8
FAN02G3403 Fragaria x ananassa HOM05D004605 ORTHO05D005804 1.4e-62 243.8 166 68.1
Cc07_g04470 Coffea canephora HOM05D004605 ORTHO05D005804 3.4e-61 239.2 148 72.3
FvH4_6g46370 Fragaria vesca HOM05D004605 ORTHO05D005804 3.4e-61 239.2 212 55.7
Pp3c14_20450 Physcomitrium patens HOM05D004605 ORTHO05D005804 1.3e-60 237.3 208 52.4
AUR62009481 Chenopodium quinoa HOM05D004605 ORTHO05D005804 3.8e-60 235.7 189 62.4
RcHm_v2.0_Chr2g0164911 Rosa chinensis HOM05D004605 ORTHO05D005804 1.9e-59 233.4 212 52.8
FAN02G1482 Fragaria x ananassa HOM05D004605 ORTHO05D005804 5.1e-57 225.3 213 53.1
SEGI_21234 Sequoiadendron giganteum HOM05D004605 ORTHO05D005804 2.5e-56 223.0 207 46.9
QL02p053766 Quercus lobata HOM05D004605 ORTHO05D005804 5.7e-56 221.9 145 66.9
AUR62024435 Chenopodium quinoa HOM05D004605 ORTHO05D005804 3.7e-55 219.2 146 67.8
Dinv33862 Davidia involucrata HOM05D004605 ORTHO05D005804 6.9e-54 214.9 145 69.0
FAN09G1153 Fragaria x ananassa HOM05D004605 ORTHO05D005804 1.2e-53 214.2 242 49.6
AagrBONN_evm.TU.Sc2ySwM_340.409 Anthoceros agrestis HOM05D004605 ORTHO05D005804 2.6e-53 213.0 193 51.3
Eucgr.L00305 Eucalyptus grandis HOM05D004605 ORTHO05D005804 1.3e-47 194.1 126 68.3
Cre12.g553700 Chlamydomonas reinhardtii HOM05D004605 ORTHO05D005804 4.8e-47 192.2 209 45.0
SalBow3G1842 Salvia bowleyana HOM05D004605 ORTHO05D005804 1.1e-46 191.0 199 51.8
AagrBONN_evm.TU.Sc2ySwM_340.410 Anthoceros agrestis HOM05D004605 ORTHO05D005804 1.2e-45 187.6 166 53.6
FAN05G1095 Fragaria x ananassa HOM05D004605 ORTHO05D005804 1.0e-44 184.5 207 47.8
FAN09G3310 Fragaria x ananassa HOM05D004605 ORTHO05D005804 2.2e-44 183.3 163 53.4
Aqoxy3G03713 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 2.6e-37 159.8 111 68.5
CDE10G0487 Ceratophyllum demersum HOM05D004605 ORTHO05D005804 1.6e-34 150.6 110 64.5
PSO591G0315 Papaver somniferum HOM05D004605 ORTHO05D005804 2.1e-26 123.6 73 69.9
Cfa025436 Carpinus fangiana HOM05D004605 ORTHO05D005804 3.6e-26 122.9 208 35.1
Pp3s30_530 Physcomitrium patens HOM05D004605 ORTHO05D005804 4.0e-25 119.4 212 35.8
MCO08G262 Micromonas commoda HOM05D004605 ORTHO05D005804 3.3e-24 116.3 236 33.5
Nn4g23522 Nelumbo nucifera HOM05D004605 ORTHO05D005804 3.3e-24 116.3 71 76.1
Cc07_g04480 Coffea canephora HOM05D004605 ORTHO05D005804 1.0e-20 104.8 75 68.0
HPP92_012204 Vanilla planifolia HOM05D004605 ORTHO05D005804 2.9e-20 103.2 138 42.8
QL02p036101 Quercus lobata HOM05D004605 ORTHO05D005804 1.2e-18 97.8 126 43.7
BolC3t14639H Brassica oleracea HOM05D004605 ORTHO05D005804 1.6e-18 97.4 66 66.7
QL10p049039 Quercus lobata HOM05D004605 ORTHO05D005804 2.7e-18 96.7 117 44.4
Mapoly0107s0018 Marchantia polymorpha HOM05D004605 ORTHO05D005804 6.1e-18 95.5 201 31.3
QL10p051328 Quercus lobata HOM05D004605 ORTHO05D005804 1.8e-17 94.0 117 42.7
Cfa022693 Carpinus fangiana HOM05D004605 ORTHO05D005804 5.2e-17 92.4 216 30.1
CBR_g36839 Chara braunii HOM05D004605 ORTHO05D005804 2.2e-15 87.0 199 26.6
Cre12.g553650 Chlamydomonas reinhardtii HOM05D004605 ORTHO05D143570 4.1e-14 82.8 180 29.4
Nn1g08579 Nelumbo nucifera HOM05D004605 ORTHO05D005804 4.1e-14 82.8 110 40.9
SMO270G0021 Selaginella moellendorffii HOM05D004605 ORTHO05D005804 4.1e-14 82.8 208 27.4
Nn1g08577 Nelumbo nucifera HOM05D004605 ORTHO05D005804 1.3e-12 77.8 56 58.9
Nn1g08580 Nelumbo nucifera HOM05D004605 ORTHO05D005804 4.2e-11 72.8 57 56.1
arahy.Tifrunner.gnm1.ann1.2EY802 Arachis hypogaea HOM05D004605 ORTHO05D005804 1.8e-09 67.4 47 63.8
HPP92_012246 Vanilla planifolia HOM05D004605 ORTHO05D005804 3.0e-09 66.6 108 37.0
HanXRQChr04g0116811 Helianthus annuus HOM05D004605 ORTHO05D005804 8.3e-07 58.5 40 62.5
BcaC01g05772 Brassica carinata HOM05D004605 ORTHO05D032242 2.4e-06 57.0 81 42.0
BolC3t14636H Brassica oleracea HOM05D004605 ORTHO05D032242 9.2e-06 55.1 79 41.8


User provided reference genes

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