Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0020832 Sechium edule HOM05D007533 ORTHO05D009622 1.3e-103 379.8 196 100.0
CsaV3_UNG210000 Cucumis sativus L. HOM05D007533 ORTHO05D009622 2.4e-94 349.0 195 93.8
Lj2P1223T74 Lonicera japonica HOM05D007533 ORTHO05D009622 7.0e-94 347.4 191 95.3
Lj2P1228T84 Lonicera japonica HOM05D007533 ORTHO05D009622 7.0e-94 347.4 191 95.3
Lj2P1231T101 Lonicera japonica HOM05D007533 ORTHO05D009622 7.0e-94 347.4 191 95.3
DCAR_032459 Daucus carota HOM05D007533 ORTHO05D009622 3.5e-93 345.1 191 95.3
Hma1.2p1_0136F.1_g062009 Hydrangea macrophylla HOM05D007533 ORTHO05D009622 4.5e-93 344.7 189 96.3
MSTRG.26054 Avicennia marina HOM05D007533 ORTHO05D009622 2.3e-92 342.4 195 92.3
Lsat_1_v5_gn_0_35060 Lactuca sativa HOM05D007533 ORTHO05D009622 2.3e-92 342.4 189 96.3
HanXRQChr16g0504431 Helianthus annuus HOM05D007533 ORTHO05D009622 8.6e-92 340.5 189 95.8
HanXRQMTg0579131 Helianthus annuus HOM05D007533 ORTHO05D009622 8.6e-92 340.5 189 95.8
Nn1g09978 Nelumbo nucifera HOM05D007533 ORTHO05D009622 1.1e-91 340.1 195 92.3
Nn1g10040 Nelumbo nucifera HOM05D007533 ORTHO05D009622 1.1e-91 340.1 195 92.3
Ah.10g028150 Amaranthus hybridus HOM05D007533 ORTHO05D009622 1.5e-91 339.7 196 92.9
HanXRQChr09g0253411 Helianthus annuus HOM05D007533 ORTHO05D009622 7.2e-91 337.4 189 95.2
CANSAT16G0029 Cannabis sativa HOM05D007533 ORTHO05D009622 4.7e-90 334.7 195 91.8
Gorai.001G167400 Gossypium raimondii HOM05D007533 ORTHO05D009622 1.4e-89 333.2 186 94.1
Aqoxy23s008 Aquilegia oxysepala HOM05D007533 ORTHO05D009622 3.0e-89 332.0 190 92.1
Aqoxy1G02967 Aquilegia oxysepala HOM05D007533 ORTHO05D009622 8.9e-89 330.5 190 91.6
RcHm_v2.0_MTg0498351 Rosa chinensis HOM05D007533 ORTHO05D009622 8.9e-89 330.5 195 89.7
AUR62042328 Chenopodium quinoa HOM05D007533 ORTHO05D009622 1.4e-86 323.2 180 95.0
LjContig00439g0010342 Lotus japonicus HOM05D007533 ORTHO05D009622 2.7e-85 318.9 196 87.2
LjContig00439g0021951 Lotus japonicus HOM05D007533 ORTHO05D009622 2.7e-85 318.9 196 87.2
MBI05_g05359_MAGBIO Magnolia biondii HOM05D007533 ORTHO05D009622 1.3e-84 316.6 182 91.2
Glyma.17G185600 Glycine max HOM05D007533 ORTHO05D009622 8.6e-84 313.9 196 85.7
Solyc00g500302.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 2.5e-83 312.4 195 85.1
Solyc11g063573.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 2.5e-83 312.4 195 85.1
Solyc00g500173.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 6.1e-82 307.8 195 84.1
Thhalv10023156m.g Eutrema salsugineum HOM05D007533 ORTHO05D009622 6.8e-81 304.3 191 85.3
Lalb_Chr00c21g0405841 Lupinus albus HOM05D007533 ORTHO05D009622 6.8e-81 304.3 189 86.2
Lalb_Chr00c24g0407011 Lupinus albus HOM05D007533 ORTHO05D009622 6.8e-81 304.3 189 86.2
AL9U10720 Arabidopsis lyrata HOM05D007533 ORTHO05D009622 1.2e-80 303.5 190 85.8
Dinv06666 Davidia involucrata HOM05D007533 ORTHO05D009622 1.2e-80 303.5 166 95.2
Lj2P1226T70 Lonicera japonica HOM05D007533 ORTHO05D009622 9.8e-80 300.4 165 95.2
CARHR283000 Cardamine hirsuta HOM05D007533 ORTHO05D009622 6.4e-79 297.7 191 83.8
CAN.G2446.3 Capsicum annuum HOM05D007533 ORTHO05D009622 1.1e-78 297.0 195 83.1
CAN.G2792.1 Capsicum annuum HOM05D007533 ORTHO05D009622 1.1e-78 297.0 195 83.1
ATMG00640 Arabidopsis thaliana HOM05D007533 ORTHO05D009622 2.4e-78 295.8 189 84.1
QL12p027939 Quercus lobata HOM05D007533 ORTHO05D009622 6.0e-77 291.2 179 84.4
Potri.007G061641 Populus trichocarpa HOM05D007533 ORTHO05D009622 1.0e-76 290.4 195 82.6
Potri.007G062602 Populus trichocarpa HOM05D007533 ORTHO05D009622 1.0e-76 290.4 195 82.6
arahy.Tifrunner.gnm1.ann1.6ILC2A Arachis hypogaea HOM05D007533 ORTHO05D009622 6.6e-76 287.7 174 87.4
arahy.Tifrunner.gnm1.ann1.R8TWAM Arachis hypogaea HOM05D007533 ORTHO05D009622 6.6e-76 287.7 174 87.4
Peaxi162Scf00651g00636 Petunia axillaris HOM05D007533 ORTHO05D009622 8.6e-76 287.3 186 81.7
CAN.G1001.31 Capsicum annuum HOM05D007533 ORTHO05D009622 1.9e-75 286.2 195 79.0
ATR0155G001 Amborella trichopoda HOM05D007533 ORTHO05D009622 2.0e-72 276.2 159 91.8
Aa31csc1168G30 Aethionema arabicum HOM05D007533 ORTHO05D009622 2.9e-71 272.3 155 92.9
Ah.02g111570 Amaranthus hybridus HOM05D007533 ORTHO05D009622 4.9e-71 271.6 156 92.3
Nitab4.5_0010333g0060 Nicotiana tabacum HOM05D007533 ORTHO05D009622 1.1e-70 270.4 171 84.2
Aqoxy12s024 Aquilegia oxysepala HOM05D007533 ORTHO05D009622 5.0e-68 261.5 152 91.4
RhsimMtG0003100 Rhododendron simsii HOM05D007194 ORTHO05D009182 6.6e-68 261.2 152 91.4
RhsimMtG0007900 Rhododendron simsii HOM05D007194 ORTHO05D009182 6.6e-68 261.2 152 91.4
CARHR288330 Cardamine hirsuta HOM05D007533 ORTHO05D009622 1.2e-66 256.9 145 93.8
CDE02G4305 Ceratophyllum demersum HOM05D007533 ORTHO05D009622 1.1e-62 243.8 160 81.2
PGSC0003DMG400026520 Solanum tuberosum HOM05D007533 ORTHO05D009622 2.1e-61 239.6 151 82.8
Peaxi162Scf01098g00002 Petunia axillaris HOM05D007533 ORTHO05D009622 6.0e-61 238.0 158 81.6
unitig_87.g27950 Utricularia gibba HOM05D007533 ORTHO05D009622 4.3e-59 231.9 139 87.8
A04p09330 Brassica napus HOM05D007533 ORTHO05D009622 4.7e-58 228.4 185 71.4
BraSC48t46232Z Brassica rapa HOM05D007533 ORTHO05D009622 4.7e-58 228.4 185 71.4
BraSC48t46320Z Brassica rapa HOM05D007533 ORTHO05D009622 4.7e-58 228.4 185 71.4
SGA_v2.0_scaffold255G45496 Striga asiatica HOM05D001560 ORTHO05D003613 8.1e-58 227.6 135 88.1
Sopen00g001050 Solanum pennellii HOM05D007533 ORTHO05D009622 3.1e-57 225.7 146 80.8
C01p34790 Brassica napus HOM05D007533 ORTHO05D009622 2.6e-56 222.6 185 69.2
arahy.Tifrunner.gnm1.ann1.PN90EB Arachis hypogaea HOM05D007533 ORTHO05D009622 5.8e-56 221.5 169 74.0
Nitab4.5_0010033g0020 Nicotiana tabacum HOM05D007533 ORTHO05D009622 9.9e-56 220.7 146 78.8
arahy.Tifrunner.gnm1.ann1.2HU8EJ Arachis hypogaea HOM05D002660 ORTHO05D009622 4.9e-55 218.4 120 94.2
SabraMtG0004200 Salix brachista HOM05D007533 ORTHO05D009622 8.4e-55 217.6 194 64.9
AL6G41410 Arabidopsis lyrata HOM05D007533 ORTHO05D009622 1.1e-51 207.2 149 76.5
BolSC28t60309H Brassica oleracea HOM05D007533 ORTHO05D009622 1.9e-51 206.5 132 83.3
BolSC28t60365H Brassica oleracea HOM05D007533 ORTHO05D009622 1.9e-51 206.5 132 83.3
Nitab4.5_0000172g1940 Nicotiana tabacum HOM05D007533 ORTHO05D009622 5.6e-51 204.9 187 65.2
Ca_07436_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 2.4e-49 199.5 109 94.5
PGSC0003DMG400030942 Solanum tuberosum HOM05D007533 ORTHO05D009622 4.0e-49 198.7 139 74.1
Ca_07440_v3 Cicer arietinum L. HOM05D007194 ORTHO05D009182 5.8e-48 194.9 109 93.6
Nitab4.5_0012599g0080 Nicotiana tabacum HOM05D007533 ORTHO05D009622 4.2e-46 188.7 129 76.7
TPR.G21214 Trifolium pratense HOM05D007533 ORTHO05D009622 1.2e-45 187.2 120 82.5
SalBow1G6690 Salvia bowleyana HOM05D007533 ORTHO05D009622 1.7e-44 183.3 100 93.0
Lsat_1_v5_gn_5_43041 Lactuca sativa HOM05D007533 ORTHO05D009622 1.5e-43 180.3 115 85.2
BolC1t03447H Brassica oleracea HOM05D007533 ORTHO05D009622 3.4e-40 169.1 99 89.9
HanXRQChr07g0189001 Helianthus annuus HOM05D007533 ORTHO05D009622 3.2e-38 162.5 97 90.7
SHI34934 Sapria himalayana HOM05D004909 ORTHO05D009316 4.6e-37 158.7 98 83.7
BraSC54t46363Z Brassica rapa HOM05D007533 ORTHO05D009622 1.9e-35 153.3 86 94.2
CAN.G649.12 Capsicum annuum HOM05D007533 ORTHO05D009622 7.4e-35 151.4 89 87.6
HanXRQChr17g0567331 Helianthus annuus HOM05D007533 ORTHO05D009622 9.6e-35 151.0 81 96.3
Nitab4.5_0010333g0150 Nicotiana tabacum HOM05D007533 ORTHO05D009622 9.0e-33 144.4 88 88.6
FAN20G2339 Fragaria x ananassa HOM05D007533 ORTHO05D010378 9.9e-32 141.0 84 89.3
TPR.G39970 Trifolium pratense HOM05D007533 ORTHO05D009622 4.6e-29 132.1 75 93.3
Lsat_1_v5_gn_1_118900 Lactuca sativa HOM05D007533 ORTHO05D009622 7.9e-29 131.3 73 91.8
SHI19535 Sapria himalayana HOM05D000105 ORTHO05D000023 2.8e-26 122.9 76 84.2
Gohir.D01G116666 Gossypium hirsutum HOM05D007533 ORTHO05D009622 2.4e-25 119.8 65 92.3
SHI23927 Sapria himalayana HOM05D007533 ORTHO05D009622 4.9e-23 112.1 162 46.9
Nitab4.5_0010333g0120 Nicotiana tabacum HOM05D007533 ORTHO05D009622 6.5e-23 111.7 79 73.4
C03p57120 Brassica napus HOM05D007533 ORTHO05D009622 2.5e-22 109.8 79 75.9
BolC3t17989H Brassica oleracea HOM05D007533 ORTHO05D009622 2.5e-22 109.8 79 75.9
Nitab4.5_0000068g0090 Nicotiana tabacum HOM05D007533 ORTHO05D009622 3.5e-21 105.9 68 85.3
Peaxi162Scf01098g00011 Petunia axillaris HOM05D007533 ORTHO05D009622 6.7e-20 101.7 63 87.3
SHI19534 Sapria himalayana HOM05D007533 ORTHO05D010378 1.1e-19 100.9 79 74.7
Nitab4.5_0002253g0020 Nicotiana tabacum HOM05D007533 ORTHO05D009622 2.5e-19 99.8 65 76.9
Oeu041867.1 Olea europaea HOM05D007533 ORTHO05D009622 5.7e-19 98.6 61 82.0
ATR0807G043 Amborella trichopoda HOM05D007533 ORTHO05D009622 2.2e-18 96.7 70 75.7
GSVIVG01010884001 Vitis vinifera HOM05D007533 ORTHO05D009622 1.4e-14 84.0 48 85.4
Peaxi162Scf00673g00229 Petunia axillaris HOM05D011380 ORTHO05D016005 6.7e-12 75.1 43 93.0
Nitab4.5_0000172g2020 Nicotiana tabacum HOM05D007533 ORTHO05D009622 4.3e-11 72.4 81 54.3
Potri.007G062422 Populus trichocarpa HOM05D007533 ORTHO05D010378 1.7e-10 70.5 59 69.5
Nitab4.5_0000034g0140 Nicotiana tabacum HOM05D007533 ORTHO05D009622 2.2e-10 70.1 53 67.9
Nitab4.5_0000832g0090 Nicotiana tabacum HOM05D007533 ORTHO05D009622 3.1e-09 66.2 36 88.9
Solyc06g042990.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 1.5e-08 63.9 43 72.1
CDE02G0940 Ceratophyllum demersum HOM05D000131 ORTHO05D000086 1.0e-07 61.2 39 76.9
Solyc02g021390.1 Solanum lycopersicum HOM05D007533 ORTHO05D016005 6.5e-07 58.5 59 57.6


User provided reference genes

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