Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0020827 Sechium edule HOM05D004114 ORTHO05D004667 0.0e+00 1187.9 621 100.0
MELO3C015192.2 Cucumis melo HOM05D004114 ORTHO05D004667 6.3e-306 1053.5 618 88.7
CsaV3_1G042830 Cucumis sativus L. HOM05D004114 ORTHO05D004667 9.1e-305 1049.7 618 88.3
ClCG03G013250 Citrullus lanatus HOM05D004114 ORTHO05D004667 1.0e-292 1009.6 618 86.1
QL01p004694 Quercus lobata HOM05D004114 ORTHO05D004667 3.8e-234 815.1 637 68.1
Cfa009771 Carpinus fangiana HOM05D004114 ORTHO05D004667 5.4e-233 811.2 622 68.3
Prupe.4G249300 Prunus persica HOM05D004114 ORTHO05D004667 3.9e-231 805.1 621 68.4
GSVIVG01025259001 Vitis vinifera HOM05D004114 ORTHO05D004667 8.7e-231 803.9 622 68.5
RcHm_v2.0_Chr5g0052041 Rosa chinensis HOM05D004114 ORTHO05D004667 1.9e-230 802.7 633 67.5
MD03G1175100 Malus domestica HOM05D004114 ORTHO05D004667 3.3e-230 802.0 633 67.0
COL.COLO4_07585 Corchorus olitorius HOM05D004114 ORTHO05D004667 8.1e-229 797.3 617 66.9
FvH4_3g28860 Fragaria vesca HOM05D004114 ORTHO05D004667 8.1e-229 797.3 615 68.3
FAN11G0384 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.1e-228 797.0 615 68.1
MD11G1193200 Malus domestica HOM05D004114 ORTHO05D004667 9.0e-228 793.9 631 67.0
Duzib150G0789 Durio zibethinus HOM05D004114 ORTHO05D004667 9.9e-227 790.4 617 67.4
FAN16G1351 Fragaria x ananassa HOM05D004114 ORTHO05D004667 9.9e-227 790.4 633 66.4
Dinv36259 Davidia involucrata HOM05D004114 ORTHO05D004667 2.9e-226 788.9 631 67.0
Thecc.09G233600 Theobroma cacao HOM05D004114 ORTHO05D004667 3.8e-226 788.5 622 66.2
Dinv22178 Davidia involucrata HOM05D004114 ORTHO05D004667 1.1e-225 786.9 627 67.1
FAN21G1677 Fragaria x ananassa HOM05D004114 ORTHO05D004667 9.3e-225 783.9 631 66.7
LjContig00081g0000990 Lotus japonicus HOM05D004114 ORTHO05D004667 1.2e-224 783.5 616 66.2
Atru.chr3.2717 Acer truncatum HOM05D004114 ORTHO05D004667 6.0e-224 781.2 617 65.8
Gohir.D09G111100 Gossypium hirsutum HOM05D004114 ORTHO05D004667 5.1e-223 778.1 627 66.0
Gorai.006G128700 Gossypium raimondii HOM05D004114 ORTHO05D004667 5.1e-223 778.1 627 65.9
Manes.06G164400 Manihot esculenta HOM05D004114 ORTHO05D004667 6.6e-223 777.7 636 63.8
Gohir.A09G114400 Gossypium hirsutum HOM05D004114 ORTHO05D004667 1.9e-222 776.2 631 65.8
TAR633G1524 Trochodendron aralioides HOM05D004114 ORTHO05D004667 2.5e-222 775.8 586 68.3
CANSAT54G0770 Cannabis sativa HOM05D004114 ORTHO05D004667 5.6e-222 774.6 613 66.9
Phvul.006G062700 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 1.6e-221 773.1 619 65.8
TWI34G1345 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 3.6e-221 771.9 630 63.0
Glyma.18G070400 Glycine max HOM05D004114 ORTHO05D004667 1.4e-220 770.0 617 65.3
arahy.Tifrunner.gnm1.ann1.Q5U408 Arachis hypogaea HOM05D004114 ORTHO05D004667 1.8e-220 769.6 608 65.1
Medtr5g096860 Medicago truncatula HOM05D004114 ORTHO05D004667 1.8e-220 769.6 612 65.2
Glyma.08G335400 Glycine max HOM05D004114 ORTHO05D004667 2.4e-220 769.2 617 65.2
TPR.G1262 Trifolium pratense HOM05D004114 ORTHO05D004667 2.0e-219 766.1 613 65.1
Actinidia23972 Actinidia chinensis HOM05D004114 ORTHO05D004667 3.4e-219 765.4 631 64.3
arahy.Tifrunner.gnm1.ann1.49TU8N Arachis hypogaea HOM05D004114 ORTHO05D004667 4.5e-219 765.0 608 64.8
vmacro12717 Vaccinium macrocarpon HOM05D004114 ORTHO05D004667 1.7e-218 763.1 630 64.3
Glyma.02G304000 Glycine max HOM05D004114 ORTHO05D004667 2.9e-218 762.3 615 64.4
CSS0048735 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 1.1e-217 760.4 625 64.5
Ca_06427_v3 Cicer arietinum L. HOM05D004114 ORTHO05D004667 5.4e-217 758.1 613 64.1
Potri.009G053400 Populus trichocarpa HOM05D004114 ORTHO05D004667 2.1e-216 756.1 668 61.1
Sabra09G0038900 Salix brachista HOM05D004114 ORTHO05D004667 2.4e-212 742.7 668 60.0
Lalb_Chr15g0082581 Lupinus albus HOM05D004114 ORTHO05D004667 4.0e-212 741.9 618 63.4
Nn7g36204 Nelumbo nucifera HOM05D004114 ORTHO05D004667 7.6e-211 737.6 621 61.8
arahy.Tifrunner.gnm1.ann1.V027MD Arachis hypogaea HOM05D004114 ORTHO05D004667 1.3e-210 736.9 617 62.9
arahy.Tifrunner.gnm1.ann1.JLH2AW Arachis hypogaea HOM05D004114 ORTHO05D004667 2.9e-210 735.7 617 62.9
VMungo0647G1293 Vigna mungo HOM05D004114 ORTHO05D004667 2.7e-208 729.2 612 62.1
Phvul.008G283500 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 3.5e-208 728.8 614 61.9
Duzib168G0105 Durio zibethinus HOM05D004114 ORTHO05D004667 4.6e-208 728.4 617 63.5
Oeu015664.1 Olea europaea HOM05D004114 ORTHO05D004667 6.0e-208 728.0 631 60.9
FAN25G0168 Fragaria x ananassa HOM05D004114 ORTHO05D004667 7.9e-208 727.6 643 62.4
THA.LOC104817907 Tarenaya hassleriana HOM05D004114 ORTHO05D004667 1.5e-206 723.4 634 60.9
CiPaw.13G160800 Carya illinoinensis HOM05D004114 ORTHO05D004667 4.3e-206 721.8 560 68.6
PGR119G0430 Punica granatum HOM05D004114 ORTHO05D004667 4.8e-205 718.4 628 61.0
Psat2g005360 Pisum sativum HOM05D004114 ORTHO05D004667 1.4e-204 716.8 643 59.4
CSS0035176 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 3.1e-204 715.7 625 62.2
DCAR_029951 Daucus carota HOM05D004114 ORTHO05D004667 5.3e-204 714.9 625 61.8
PSO339G0497 Papaver somniferum HOM05D004114 ORTHO05D004667 5.8e-203 711.4 621 61.2
arahy.Tifrunner.gnm1.ann1.4V7EDQ Arachis hypogaea HOM05D004114 ORTHO05D004667 1.7e-202 709.9 550 65.6
Sc16g0011490 Simmondsia chinensis HOM05D004114 ORTHO05D004667 1.4e-201 706.8 618 60.8
Sp1g38010 Schrenkiella parvula HOM05D004114 ORTHO05D004667 2.1e-200 703.0 610 61.0
Aa31LG10G3520 Aethionema arabicum HOM05D004114 ORTHO05D004667 2.7e-200 702.6 613 60.7
Ah.06g194200 Amaranthus hybridus HOM05D004114 ORTHO05D004667 1.3e-199 700.3 619 59.1
Solyc11g065750.2 Solanum lycopersicum HOM05D004114 ORTHO05D004667 1.8e-199 699.9 639 59.5
Sopen11g025510 Solanum pennellii HOM05D004114 ORTHO05D004667 1.1e-198 697.2 640 59.2
Thhalv10011291m.g Eutrema salsugineum HOM05D004114 ORTHO05D004667 9.7e-198 694.1 611 60.4
Cc00_g05950 Coffea canephora HOM05D004114 ORTHO05D004667 2.2e-197 693.0 639 58.2
Lalb_Chr18g0050571 Lupinus albus HOM05D004114 ORTHO05D004667 2.2e-197 693.0 607 60.6
Peaxi162Scf00004g00237 Petunia axillaris HOM05D004114 ORTHO05D004667 3.1e-196 689.1 634 58.8
BraA06t23464Z Brassica rapa HOM05D004114 ORTHO05D004667 5.3e-196 688.3 604 59.8
Haze_23137 Corylus avellana HOM05D004114 ORTHO05D004667 1.5e-195 686.8 604 62.4
AUR62000120 Chenopodium quinoa HOM05D004114 ORTHO05D004667 2.0e-195 686.4 618 57.4
A06p02560 Brassica napus HOM05D004114 ORTHO05D004667 3.4e-195 685.6 604 59.6
BcaB07g33582 Brassica carinata HOM05D004114 ORTHO05D004667 5.9e-195 684.9 608 59.4
Nitab4.5_0001587g0080 Nicotiana tabacum HOM05D004114 ORTHO05D004667 2.2e-194 682.9 636 57.9
Aqoxy2G00130 Aquilegia oxysepala HOM05D004114 ORTHO05D004667 1.1e-193 680.6 620 57.3
BcaC08g43302 Brassica carinata HOM05D004114 ORTHO05D004667 2.5e-193 679.5 605 59.0
C06p06490 Brassica napus HOM05D004114 ORTHO05D004667 2.5e-193 679.5 605 59.0
BolC6t35762H Brassica oleracea HOM05D004114 ORTHO05D004667 2.5e-193 679.5 605 59.0
Carub.0001s4022 Capsella rubella HOM05D004114 ORTHO05D004667 2.5e-193 679.5 605 59.7
CARHR041420 Cardamine hirsuta HOM05D004114 ORTHO05D004667 3.2e-193 679.1 610 58.9
MSTRG.12468 Avicennia marina HOM05D004114 ORTHO05D004667 5.5e-193 678.3 633 57.8
AL1G59170 Arabidopsis lyrata HOM05D004114 ORTHO05D004667 1.2e-192 677.2 610 58.7
Hund07507 Selenicereus undatus HOM05D004114 ORTHO05D004667 1.2e-192 677.2 625 57.8
AT1G51350 Arabidopsis thaliana HOM05D004114 ORTHO05D004667 1.6e-192 676.8 610 58.9
SalBow6G3263 Salvia bowleyana HOM05D004114 ORTHO05D004667 2.3e-191 672.9 676 54.7
HanXRQChr07g0197461 Helianthus annuus HOM05D004114 ORTHO05D004667 3.0e-191 672.5 627 57.6
TWI60G1569 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 5.1e-191 671.8 620 57.6
Ciclev10014795m.g Citrus clementina HOM05D004114 ORTHO05D004667 3.3e-190 669.1 509 68.0
SGA_v2.0_scaffold42G16101 Striga asiatica HOM05D004114 ORTHO05D004667 1.1e-188 664.1 639 57.0
Migut.D00601 Erythranthe guttata HOM05D004114 ORTHO05D004667 1.9e-185 653.3 632 55.2
unitig_699.g19135 Utricularia gibba HOM05D004114 ORTHO05D004667 4.2e-185 652.1 634 54.3
Lsat_1_v5_gn_2_97760 Lactuca sativa HOM05D004114 ORTHO05D004667 2.7e-184 649.4 628 57.0
CDE05G0618 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 4.8e-181 638.6 619 55.4
Nn2g15370 Nelumbo nucifera HOM05D004114 ORTHO05D004667 4.8e-181 638.6 509 64.4
EL10Ac4g10249 Beta vulgaris HOM05D004114 ORTHO05D004667 1.2e-176 624.0 619 54.9
Oeu043295.1 Olea europaea HOM05D004114 ORTHO05D004667 1.8e-175 620.2 581 58.7
EL10Ac4g10252 Beta vulgaris HOM05D004114 ORTHO05D004667 8.8e-175 617.8 620 54.4
Oeu063322.2 Olea europaea HOM05D004114 ORTHO05D004667 2.8e-173 612.8 632 52.5
Nitab4.5_0002741g0170 Nicotiana tabacum HOM05D004114 ORTHO05D004667 3.6e-168 595.9 564 56.7
ATR0332G053 Amborella trichopoda HOM05D004114 ORTHO05D004667 4.4e-166 589.0 620 52.6
Eucgr.J00767 Eucalyptus grandis HOM05D004114 ORTHO05D004667 1.2e-158 564.3 497 58.4
AUR62019301 Chenopodium quinoa HOM05D004114 ORTHO05D004667 1.7e-157 560.5 511 56.0
HPP92_020382 Vanilla planifolia HOM05D004114 ORTHO05D004667 3.1e-156 556.2 620 49.7
CDE05G0406 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 2.3e-154 550.1 620 50.2
Zm00001eb115370 Zea mays HOM05D004114 ORTHO05D004667 1.9e-153 547.0 629 49.8
ECA238G2774 Erigeron canadensis HOM05D004114 ORTHO05D004667 7.2e-153 545.0 624 52.4
CAN.G599.3 Capsicum annuum HOM05D004114 ORTHO05D004667 7.5e-150 535.0 478 59.6
SEGI_01130 Sequoiadendron giganteum HOM05D004114 ORTHO05D004667 8.6e-146 521.5 621 46.1
TAR636G2716 Trochodendron aralioides HOM05D004114 ORTHO05D004667 6.6e-138 495.4 374 67.6
Mapoly0179s0020 Marchantia polymorpha HOM05D004114 ORTHO05D004667 2.3e-130 470.3 622 42.0
Cpa.g.sc84.54 Carica papaya HOM05D004114 ORTHO05D004667 2.5e-129 466.8 393 61.6
Psat3g081440 Pisum sativum HOM05D004114 ORTHO05D004667 4.0e-127 459.5 389 61.2
Pp3c15_7590 Physcomitrium patens HOM05D004114 ORTHO05D004667 6.8e-127 458.8 620 41.8
Zm00001eb166150 Zea mays HOM05D004114 ORTHO05D004667 6.4e-125 452.2 593 45.4
Pp3c9_10010 Physcomitrium patens HOM05D004114 ORTHO05D004667 9.2e-124 448.4 620 41.1
SMO347G0278 Selaginella moellendorffii HOM05D004114 ORTHO05D004667 2.1e-123 447.2 620 42.3
Lj1A330G26 Lonicera japonica HOM05D004114 ORTHO05D004667 2.0e-118 430.6 392 60.2
AagrBONN_evm.TU.Sc2ySwM_340.1837 Anthoceros agrestis HOM05D004114 ORTHO05D004667 7.1e-116 422.2 619 38.4
Psat4g064240 Pisum sativum HOM05D004114 ORTHO05D004667 1.2e-83 315.1 445 42.7
BcaC01g01258 Brassica carinata HOM05D004114 ORTHO05D004667 6.7e-82 309.3 349 50.1
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 9.7e-73 278.9 234 59.8
Lj1A330G24 Lonicera japonica HOM05D004114 ORTHO05D004667 1.7e-69 268.1 218 65.6
CBR_g56096 Chara braunii HOM05D004114 ORTHO05D004667 1.6e-67 261.5 429 36.4
Actinidia06341 Actinidia chinensis HOM05D004114 ORTHO05D004667 6.7e-66 256.1 212 62.3
C03p89880 Brassica napus HOM05D004114 ORTHO05D004667 4.4e-65 253.4 383 42.3
TAR636G0924 Trochodendron aralioides HOM05D004114 ORTHO05D004667 1.4e-63 248.4 214 61.7
BolC3t21309H Brassica oleracea HOM05D004114 ORTHO05D004667 1.3e-61 241.9 314 46.2
Cpa.g.sc84.55 Carica papaya HOM05D004114 ORTHO05D004667 1.9e-52 211.5 202 59.9
Psat5g252640 Pisum sativum HOM05D004114 ORTHO05D004667 8.8e-50 202.6 252 46.8
C03p89900 Brassica napus HOM05D004114 ORTHO05D004667 7.0e-47 193.0 306 41.5
arahy.Tifrunner.gnm1.ann1.MJQJ0M Arachis hypogaea HOM05D004114 ORTHO05D004667 1.6e-46 191.8 201 55.2
FAN23G2589 Fragaria x ananassa HOM05D004114 ORTHO05D004667 6.5e-45 186.4 158 63.9
BcaC08g43303 Brassica carinata HOM05D004114 ORTHO05D004667 8.5e-45 186.0 272 46.0
Actinidia39399 Actinidia chinensis HOM05D004114 ORTHO05D004667 2.0e-33 148.3 238 43.7
arahy.Tifrunner.gnm1.ann1.HDR10P Arachis hypogaea HOM05D004114 ORTHO05D004667 6.4e-32 143.3 187 47.6
Os11g0638900 Oryza sativa ssp. japonica HOM05D004114 ORTHO05D004667 1.0e-29 136.0 142 50.7
BraA08t32330Z Brassica rapa HOM05D004114 ORTHO05D004667 2.5e-28 131.3 149 48.3
FvH4_1g30480 Fragaria vesca HOM05D001826 ORTHO05D015538 6.2e-27 126.7 96 68.8
Cre16.g664750 Chlamydomonas reinhardtii HOM05D004114 ORTHO05D004667 2.6e-25 121.3 604 23.5
FAN26G0366 Fragaria x ananassa HOM05D004114 ORTHO05D004667 3.2e-23 114.4 131 51.1
FAN19G0092 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.6e-22 112.1 134 51.5
FAN06G1142 Fragaria x ananassa HOM05D004114 ORTHO05D004667 3.5e-22 110.9 132 51.5
Actinidia06340 Actinidia chinensis HOM05D004114 ORTHO05D004667 1.7e-21 108.6 120 55.0
FvH4_1g27340 Fragaria vesca HOM05D004114 ORTHO05D004667 1.5e-20 105.5 148 47.3
FvH4_1g27570 Fragaria vesca HOM05D004114 ORTHO05D004667 3.3e-20 104.4 74 68.9
FvH4_7g05120 Fragaria vesca HOM05D004114 ORTHO05D004667 1.6e-19 102.1 74 68.9
Haze_23136 Corylus avellana HOM05D004114 ORTHO05D004667 4.7e-19 100.5 74 67.6
FAN19G1745 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.2e-17 95.9 67 71.6
FAN28G1325 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.0e-17 95.1 87 58.6
Sabra16G0157900 Salix brachista HOM05D004114 ORTHO05D004667 2.4e-15 88.2 74 56.8
Oeu054838.1 Olea europaea HOM05D004114 ORTHO05D004667 1.0e-13 82.8 74 58.1
Psat1g158360 Pisum sativum HOM05D000344 ORTHO05D025701 1.9e-12 78.6 68 55.9
A08p02990 Brassica napus HOM05D004114 ORTHO05D004667 4.3e-12 77.4 82 46.3
arahy.Tifrunner.gnm1.ann1.KKW1YJ Arachis hypogaea HOM05D004114 ORTHO05D004667 4.7e-11 73.9 47 74.5
Zm00001eb110990 Zea mays HOM05D000534 ORTHO05D000389 2.2e-08 65.1 96 44.8
Dinv18208 Davidia involucrata HOM05D000103 ORTHO05D000049 3.7e-08 64.3 49 67.3
EL10Ac3g06409 Beta vulgaris HOM05D004114 ORTHO05D004667 1.9e-07 62.0 54 50.0
Cfa026112 Carpinus fangiana HOM05D004114 ORTHO05D125150 7.1e-07 60.1 161 28.0


User provided reference genes

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