Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0020820 Sechium edule HOM05D005102 ORTHO05D006090 2.4e-143 512.3 292 100.0
ClCG06G002570 Citrullus lanatus HOM05D005102 ORTHO05D006090 3.7e-123 445.3 285 87.7
MELO3C022272.2 Cucumis melo HOM05D005102 ORTHO05D006090 1.0e-101 374.0 294 77.2
Cfa014795 Carpinus fangiana HOM05D005102 ORTHO05D006090 1.2e-92 344.0 292 67.1
Haze_11479 Corylus avellana HOM05D005102 ORTHO05D006090 1.7e-91 340.1 292 66.4
Manes.03G102500 Manihot esculenta HOM05D005102 ORTHO05D006090 8.3e-91 337.8 297 65.0
CiPaw.01G176900 Carya illinoinensis HOM05D005102 ORTHO05D006090 1.2e-89 334.0 294 65.6
MD06G1229400 Malus domestica HOM05D005102 ORTHO05D006090 4.5e-89 332.0 295 65.4
QL08p018871 Quercus lobata HOM05D005102 ORTHO05D006090 6.5e-88 328.2 293 63.8
Ca_11361_v3 Cicer arietinum L. HOM05D005102 ORTHO05D006090 2.5e-87 326.2 294 62.9
Actinidia37761 Actinidia chinensis HOM05D005102 ORTHO05D006090 4.2e-87 325.5 295 62.4
TAR365G0288 Trochodendron aralioides HOM05D005102 ORTHO05D006090 4.2e-87 325.5 296 66.2
QL06p021548 Quercus lobata HOM05D005102 ORTHO05D006090 5.5e-87 325.1 291 64.3
GSVIVG01027934001 Vitis vinifera HOM05D005102 ORTHO05D006090 5.5e-87 325.1 292 67.1
Medtr2g028660 Medicago truncatula HOM05D005102 ORTHO05D006090 9.5e-87 324.3 311 61.1
Psat7g046400 Pisum sativum HOM05D005102 ORTHO05D006090 1.6e-86 323.6 294 62.9
Glyma.15G125200 Glycine max HOM05D005102 ORTHO05D006090 4.7e-86 322.0 293 62.8
Lj3g0001784 Lotus japonicus HOM05D005102 ORTHO05D006090 4.7e-86 322.0 294 64.6
Lj6g0009036 Lotus japonicus HOM05D005102 ORTHO05D006090 1.4e-85 320.5 294 63.9
Ciclev10005541m.g Citrus clementina HOM05D005102 ORTHO05D006090 2.3e-85 319.7 295 63.1
Psat1g170520 Pisum sativum HOM05D005102 ORTHO05D006090 4.0e-85 318.9 295 62.0
Prupe.5G230500 Prunus persica HOM05D005102 ORTHO05D006090 4.0e-85 318.9 296 59.1
TPR.G17506 Trifolium pratense HOM05D005102 ORTHO05D006090 5.2e-85 318.5 294 62.6
CANSAT78G2207 Cannabis sativa HOM05D005102 ORTHO05D006090 6.8e-85 318.2 299 60.9
COL.COLO4_15983 Corchorus olitorius HOM05D005102 ORTHO05D006090 6.8e-85 318.2 294 61.9
THA.LOC104808740 Tarenaya hassleriana HOM05D005102 ORTHO05D006090 4.4e-84 315.5 297 62.0
TWI09G0526 Tripterygium wilfordii HOM05D005102 ORTHO05D006090 7.5e-84 314.7 293 61.8
Thecc.04G266700 Theobroma cacao HOM05D005102 ORTHO05D006090 1.3e-83 313.9 294 60.5
Gohir.A02G043600 Gossypium hirsutum HOM05D005102 ORTHO05D006090 3.7e-83 312.4 294 59.5
Dinv27121 Davidia involucrata HOM05D005102 ORTHO05D006090 1.1e-82 310.8 281 62.3
Gorai.005G054400 Gossypium raimondii HOM05D005102 ORTHO05D006090 1.1e-82 310.8 294 59.2
Phvul.006G133300 Phaseolus vulgaris HOM05D005102 ORTHO05D006090 1.1e-82 310.8 294 62.2
Glyma.09G019100 Glycine max HOM05D005102 ORTHO05D006090 2.4e-82 309.7 294 61.9
Duzib052G0859 Durio zibethinus HOM05D005102 ORTHO05D006090 3.1e-82 309.3 294 59.2
CsaV3_6G008560 Cucumis sativus L. HOM05D005102 ORTHO05D006090 4.1e-82 308.9 237 74.7
DCAR_030764 Daucus carota HOM05D005102 ORTHO05D006090 4.1e-82 308.9 282 63.1
Nitab4.5_0001041g0140 Nicotiana tabacum HOM05D005102 ORTHO05D006090 5.4e-82 308.5 294 61.6
CSS0043447 Camellia sinensis var. sinensis HOM05D005102 ORTHO05D006090 7.0e-82 308.1 296 61.1
FAN08G3625 Fragaria x ananassa HOM05D005102 ORTHO05D006090 1.2e-81 307.4 292 59.2
FAN18G4219 Fragaria x ananassa HOM05D005102 ORTHO05D006090 1.2e-81 307.4 292 59.6
Cc03_g06480 Coffea canephora HOM05D005102 ORTHO05D006090 1.6e-81 307.0 304 60.2
CSS0019941 Camellia sinensis var. sinensis HOM05D005102 ORTHO05D006090 2.7e-81 306.2 296 60.8
FAN13G1436 Fragaria x ananassa HOM05D005102 ORTHO05D006090 2.7e-81 306.2 292 59.6
FvH4_5g17100 Fragaria vesca HOM05D005102 ORTHO05D006090 3.5e-81 305.8 292 59.2
FAN04G2658 Fragaria x ananassa HOM05D005102 ORTHO05D006090 3.5e-81 305.8 292 58.9
VMungo0540G0767 Vigna mungo HOM05D005102 ORTHO05D006090 5.9e-81 305.1 284 62.7
Aa31LG8G11040 Aethionema arabicum HOM05D005102 ORTHO05D006090 2.3e-80 303.1 296 58.8
AL3G39760 Arabidopsis lyrata HOM05D005102 ORTHO05D006090 2.3e-80 303.1 292 60.6
RcHm_v2.0_Chr7g0178711 Rosa chinensis HOM05D005102 ORTHO05D006090 2.9e-80 302.8 300 57.3
Aqoxy5G00133 Aquilegia oxysepala HOM05D005102 ORTHO05D006090 3.8e-80 302.4 296 59.5
Carub.0003s2465 Capsella rubella HOM05D005102 ORTHO05D006090 3.8e-80 302.4 296 60.1
Rhsim01G0226300 Rhododendron simsii HOM05D005102 ORTHO05D006090 6.6e-80 301.6 320 60.3
Atru.chr12.1207 Acer truncatum HOM05D005102 ORTHO05D006090 8.6e-80 301.2 257 66.9
EL10Ac3g06678 Beta vulgaris HOM05D005102 ORTHO05D006090 1.1e-79 300.8 271 62.0
Potri.010G064900 Populus trichocarpa HOM05D005102 ORTHO05D006090 1.1e-79 300.8 301 61.1
Eucgr.K00416 Eucalyptus grandis HOM05D005102 ORTHO05D006090 1.9e-79 300.1 255 66.7
Nn3g19843 Nelumbo nucifera HOM05D005102 ORTHO05D006090 1.9e-79 300.1 288 60.1
HanXRQChr01g0011201 Helianthus annuus HOM05D005102 ORTHO05D006090 2.5e-79 299.7 264 64.0
AT3G24315 Arabidopsis thaliana HOM05D005102 ORTHO05D006090 3.3e-79 299.3 295 60.3
BraA07t28587Z Brassica rapa HOM05D005102 ORTHO05D006090 4.3e-79 298.9 294 59.5
A07p08000 Brassica napus HOM05D005102 ORTHO05D006090 1.2e-78 297.4 294 59.2
THA.LOC104810405 Tarenaya hassleriana HOM05D005102 ORTHO05D006090 1.6e-78 297.0 259 64.5
AUR62018036 Chenopodium quinoa HOM05D005102 ORTHO05D006090 2.1e-78 296.6 293 58.7
Lalb_Chr06g0169571 Lupinus albus HOM05D005102 ORTHO05D006090 2.1e-78 296.6 295 63.1
Thhalv10002630m.g Eutrema salsugineum HOM05D005102 ORTHO05D006090 2.8e-78 296.2 295 59.7
BcaB06g26613 Brassica carinata HOM05D005102 ORTHO05D006090 3.6e-78 295.8 294 59.2
BcaC06g35682 Brassica carinata HOM05D005102 ORTHO05D006090 4.7e-78 295.4 297 59.9
C07p12060 Brassica napus HOM05D005102 ORTHO05D006090 4.7e-78 295.4 297 59.9
BolC7t41674H Brassica oleracea HOM05D005102 ORTHO05D006090 6.1e-78 295.0 297 59.9
Migut.G00562 Erythranthe guttata HOM05D005102 ORTHO05D006090 8.0e-78 294.7 298 59.1
Nitab4.5_0005154g0050 Nicotiana tabacum HOM05D005102 ORTHO05D006090 1.0e-77 294.3 329 54.7
Ah.10g026170 Amaranthus hybridus HOM05D005102 ORTHO05D006090 1.8e-77 293.5 295 58.0
CARHR100410 Cardamine hirsuta HOM05D005102 ORTHO05D006090 1.8e-77 293.5 259 63.3
arahy.Tifrunner.gnm1.ann1.Z186RR Arachis hypogaea HOM05D005102 ORTHO05D006090 2.3e-77 293.1 325 56.0
Sp3g22120 Schrenkiella parvula HOM05D005102 ORTHO05D006090 2.3e-77 293.1 296 58.8
Sc13g0003090 Simmondsia chinensis HOM05D005102 ORTHO05D006090 2.3e-77 293.1 294 60.2
Sopen09g033820 Solanum pennellii HOM05D005102 ORTHO05D006090 5.2e-77 292.0 298 60.1
Lj6A637G59 Lonicera japonica HOM05D005102 ORTHO05D006090 4.4e-76 288.9 359 53.8
Solyc09g090860.4 Solanum lycopersicum HOM05D005102 ORTHO05D006090 5.7e-76 288.5 299 60.5
BcaC01g03326 Brassica carinata HOM05D005102 ORTHO05D006090 2.2e-75 286.6 297 57.9
C03p53630 Brassica napus HOM05D005102 ORTHO05D006090 2.2e-75 286.6 297 57.9
Lsat_1_v5_gn_1_75501 Lactuca sativa HOM05D005102 ORTHO05D006090 1.4e-74 283.9 259 61.0
CDE09G0962 Ceratophyllum demersum HOM05D005102 ORTHO05D006090 9.2e-74 281.2 251 62.9
CAN.G812.17 Capsicum annuum HOM05D005102 ORTHO05D006090 2.7e-73 279.6 294 58.2
Sabra10G0042100 Salix brachista HOM05D005102 ORTHO05D006090 4.6e-73 278.9 308 57.5
BolC3t17623H Brassica oleracea HOM05D005102 ORTHO05D006090 2.3e-72 276.6 305 56.1
ATR0787G185 Amborella trichopoda HOM05D005102 ORTHO05D006090 6.6e-72 275.0 253 59.7
MSTRG.9850 Avicennia marina HOM05D005102 ORTHO05D006090 5.6e-71 271.9 302 56.0
CDE02G3615 Ceratophyllum demersum HOM05D005102 ORTHO05D006090 2.1e-70 270.0 250 61.2
Zm00001eb238020 Zea mays HOM05D005102 ORTHO05D006090 2.1e-70 270.0 251 62.2
AUR62015240 Chenopodium quinoa HOM05D005102 ORTHO05D006090 1.8e-69 266.9 293 55.3
Os02g0658900 Oryza sativa ssp. japonica HOM05D005102 ORTHO05D006090 2.3e-69 266.5 253 61.3
Oeu047122.2 Olea europaea HOM05D005102 ORTHO05D006090 1.2e-68 264.2 385 45.7
HPP92_021768 Vanilla planifolia HOM05D005102 ORTHO05D006090 1.2e-68 264.2 255 60.4
PSO170G5569 Papaver somniferum HOM05D005102 ORTHO05D006090 2.6e-68 263.1 293 53.6
PSO302G0040 Papaver somniferum HOM05D005102 ORTHO05D006090 4.4e-68 262.3 293 53.2
PSO832G1873 Papaver somniferum HOM05D005102 ORTHO05D006090 4.4e-68 262.3 293 53.6
A03p43600 Brassica napus HOM05D005102 ORTHO05D006090 9.8e-68 261.2 298 56.0
Hund22254 Selenicereus undatus HOM05D005102 ORTHO05D006090 1.4e-66 257.3 332 50.6
PGSC0003DMG400001501 Solanum tuberosum HOM05D005102 ORTHO05D006090 5.4e-66 255.4 389 46.3
PSO764G0108 Papaver somniferum HOM05D005102 ORTHO05D006090 2.0e-65 253.4 294 51.4
Gohir.D02G049200 Gossypium hirsutum HOM05D005102 ORTHO05D006090 3.3e-63 246.1 213 62.9
SGA_v2.0_scaffold127G34013 Striga asiatica HOM05D005102 ORTHO05D006090 7.3e-63 245.0 300 54.3
SGA_v2.0_scaffold193G40717 Striga asiatica HOM05D005102 ORTHO05D006090 4.0e-61 239.2 221 62.0
SEGI_01035 Sequoiadendron giganteum HOM05D005102 ORTHO05D006090 5.8e-60 235.3 248 52.4
SGA_v2.0_scaffold454G51888 Striga asiatica HOM05D005102 ORTHO05D006090 6.4e-59 231.9 298 51.3
vmacro04848 Vaccinium macrocarpon HOM05D005102 ORTHO05D006090 7.8e-57 224.9 198 66.2
BraA03t13497Z Brassica rapa HOM05D005102 ORTHO05D006090 7.3e-55 218.4 295 50.2
TWI63G1490 Tripterygium wilfordii HOM05D005102 ORTHO05D006090 4.4e-52 209.1 229 55.0
Cpa.g.sc59.14 Carica papaya HOM05D005102 ORTHO05D006090 2.2e-51 206.8 183 64.5
vmacro20979 Vaccinium macrocarpon HOM05D005102 ORTHO05D006090 2.1e-49 200.3 220 56.4
AagrBONN_evm.TU.Sc2ySwM_228.1541 Anthoceros agrestis HOM05D005102 ORTHO05D006090 1.6e-46 190.7 235 47.2
AagrBONN_evm.TU.Sc2ySwM_368.1701 Anthoceros agrestis HOM05D005102 ORTHO05D006090 2.1e-46 190.3 235 47.2
Peaxi162Scf00531g00334 Petunia axillaris HOM05D005102 ORTHO05D006090 8.9e-45 184.9 174 60.9
SHI00826 Sapria himalayana HOM05D005102 ORTHO05D006090 9.9e-44 181.4 282 43.3
Mapoly0019s0137 Marchantia polymorpha HOM05D005102 ORTHO05D006090 3.8e-43 179.5 245 44.1
SalBow2G1408 Salvia bowleyana HOM05D005102 ORTHO05D006090 6.0e-41 172.2 183 57.4
ECA247G3419 Erigeron canadensis HOM05D005102 ORTHO05D006090 1.7e-40 170.6 166 62.7
Nitab4.5_0002613g0070 Nicotiana tabacum HOM05D005102 ORTHO05D006090 1.5e-39 167.5 129 73.6
SMO364G0891 Selaginella moellendorffii HOM05D005102 ORTHO05D006090 9.9e-36 154.8 215 42.8
Pp3c27_3370 Physcomitrium patens HOM05D005102 ORTHO05D006090 5.4e-34 149.1 234 36.8
CBR_g37523 Chara braunii HOM05D005102 ORTHO05D006090 1.6e-33 147.5 230 41.3
Phvul.006G132800 Phaseolus vulgaris HOM05D005102 ORTHO05D006090 7.4e-31 138.7 179 50.3
Peaxi162Scf00531g00327 Petunia axillaris HOM05D000868 ORTHO05D000711 2.8e-30 136.7 123 62.6
arahy.Tifrunner.gnm1.ann1.4HQ694 Arachis hypogaea HOM05D005102 ORTHO05D006090 4.8e-30 136.0 126 62.7
Eucgr.G00566 Eucalyptus grandis HOM05D005102 ORTHO05D006090 6.9e-29 132.1 119 63.0
Zm00001eb048840 Zea mays HOM05D005102 ORTHO05D006090 9.3e-26 121.7 169 46.7
Pp3c16_3280 Physcomitrium patens HOM05D005102 ORTHO05D006090 6.0e-25 119.0 228 34.2
unitig_748.g8293 Utricularia gibba HOM05D005102 ORTHO05D006090 1.3e-22 111.3 130 53.1
CiPaw.02G105900 Carya illinoinensis HOM05D005102 ORTHO05D006090 6.2e-22 109.0 97 61.9
Dinv30772 Davidia involucrata HOM05D005102 ORTHO05D006090 3.4e-20 103.2 80 73.8
Zm00001eb188010 Zea mays HOM05D005102 ORTHO05D006090 1.3e-19 101.3 118 50.8
Zm00001eb144710 Zea mays HOM05D005102 ORTHO05D006090 4.9e-19 99.4 174 41.4
Zm00001eb021120 Zea mays HOM05D005102 ORTHO05D006090 4.3e-15 86.3 105 49.5
Zm00001eb156410 Zea mays HOM05D005102 ORTHO05D006090 4.3e-15 86.3 105 49.5
Zm00001eb291560 Zea mays HOM05D005102 ORTHO05D006090 7.4e-15 85.5 105 49.5
PRCOL_00001816 Prasinoderma coloniale HOM05D005102 ORTHO05D006090 9.3e-10 68.6 202 31.7
Cre02.g090650 Chlamydomonas reinhardtii HOM05D005102 ORTHO05D006090 1.3e-08 64.7 180 26.1
Zm00001eb324110 Zea mays HOM05D005102 ORTHO05D006090 1.3e-08 64.7 62 56.5


User provided reference genes

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