Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0020807 Sechium edule HOM05D005675 ORTHO05D006884 5.3e-185 651.0 348 100.0
ClCG05G011260 Citrullus lanatus HOM05D005675 ORTHO05D006884 1.4e-137 493.4 350 75.7
CsaV3_3G021160 Cucumis sativus L. HOM05D005675 ORTHO05D006884 2.7e-117 426.0 349 67.6
MELO3C020255.2 Cucumis melo HOM05D005675 ORTHO05D006884 1.6e-109 400.2 328 66.8
QL11p008661 Quercus lobata HOM05D005675 ORTHO05D006884 1.5e-83 313.9 352 53.7
Dinv26452 Davidia involucrata HOM05D005675 ORTHO05D006884 4.9e-82 308.9 347 52.7
Prupe.4G276600 Prunus persica HOM05D005675 ORTHO05D006884 1.4e-81 307.4 357 52.4
Cfa020754 Carpinus fangiana HOM05D005675 ORTHO05D006884 1.9e-81 307.0 354 53.4
RcHm_v2.0_Chr2g0128761 Rosa chinensis HOM05D005675 ORTHO05D006884 1.9e-81 307.0 348 53.4
MD07G1305000 Malus domestica HOM05D005675 ORTHO05D006884 2.4e-81 306.6 353 53.3
CiPaw.16G104100 Carya illinoinensis HOM05D005675 ORTHO05D006884 4.6e-80 302.4 352 51.7
Potri.006G078700 Populus trichocarpa HOM05D005675 ORTHO05D006884 5.6e-78 295.4 354 48.9
TWI63G1173 Tripterygium wilfordii HOM05D005675 ORTHO05D006884 1.2e-77 294.3 350 51.1
TAR626G0076 Trochodendron aralioides HOM05D005675 ORTHO05D006884 2.1e-77 293.5 356 51.4
Sabra06G0059600 Salix brachista HOM05D005675 ORTHO05D006884 1.4e-76 290.8 354 48.0
Ciclev10008766m.g Citrus clementina HOM05D005675 ORTHO05D006884 1.8e-76 290.4 345 49.9
CSS0039496 Camellia sinensis var. sinensis HOM05D005675 ORTHO05D006884 4.0e-76 289.3 348 52.6
TWI34G2031 Tripterygium wilfordii HOM05D005675 ORTHO05D006884 8.9e-76 288.1 342 50.9
Lj1g0011117 Lotus japonicus HOM05D005675 ORTHO05D006884 1.5e-75 287.3 350 48.6
Manes.01G177400 Manihot esculenta HOM05D005675 ORTHO05D006884 2.6e-75 286.6 357 48.7
FAN09G4269 Fragaria x ananassa HOM05D005675 ORTHO05D006884 4.4e-75 285.8 348 51.4
GSVIVG01000235001 Vitis vinifera HOM05D005675 ORTHO05D006884 9.9e-75 284.6 349 50.4
Actinidia02470 Actinidia chinensis HOM05D005675 ORTHO05D006884 2.9e-74 283.1 347 49.9
Hma1.2p1_0661F.1_g198030 Hydrangea macrophylla HOM05D005675 ORTHO05D006884 8.4e-74 281.6 354 48.3
FAN14G0585 Fragaria x ananassa HOM05D005675 ORTHO05D006884 1.9e-73 280.4 348 50.9
Dinv25398 Davidia involucrata HOM05D005675 ORTHO05D006884 5.4e-73 278.9 340 50.3
COL.COLO4_23415 Corchorus olitorius HOM05D005675 ORTHO05D006884 4.6e-72 275.8 342 48.5
FAN05G3686 Fragaria x ananassa HOM05D005675 ORTHO05D006884 8.7e-71 271.6 360 49.2
Ca_25634_v3 Cicer arietinum L. HOM05D005675 ORTHO05D001317 2.1e-69 266.9 343 46.1
Eucgr.C02170 Eucalyptus grandis HOM05D005675 ORTHO05D006884 2.1e-69 266.9 352 45.7
DCAR_009047 Daucus carota HOM05D005675 ORTHO05D006884 2.8e-69 266.5 353 45.3
CANSAT80G1422 Cannabis sativa HOM05D005675 ORTHO05D006884 4.8e-69 265.8 350 45.7
Cc00_g00090 Coffea canephora HOM05D005675 ORTHO05D006884 1.4e-68 264.2 351 46.4
Lalb_Chr14g0362531 Lupinus albus HOM05D005675 ORTHO05D006884 3.4e-67 259.6 342 44.4
PGR044G2364 Punica granatum HOM05D005675 ORTHO05D006884 3.4e-67 259.6 344 47.4
Cpa.g.sc115.21 Carica papaya HOM05D005675 ORTHO05D006884 4.4e-67 259.2 349 47.0
Gorai.004G024100 Gossypium raimondii HOM05D005675 ORTHO05D006884 2.9e-66 256.5 346 45.7
VMungo0464G1932 Vigna mungo HOM05D005675 ORTHO05D001317 4.9e-66 255.8 343 45.5
PSO063G5127 Papaver somniferum HOM05D005675 ORTHO05D006884 6.4e-66 255.4 352 46.0
TPR.G21343 Trifolium pratense HOM05D005675 ORTHO05D006884 1.9e-65 253.8 341 43.4
Duzib168G1643 Durio zibethinus HOM05D005675 ORTHO05D006884 4.2e-65 252.7 346 46.2
Glyma.01G001700 Glycine max HOM05D005675 ORTHO05D006884 5.4e-65 252.3 346 45.7
Gohir.A08G016800 Gossypium hirsutum HOM05D005675 ORTHO05D006884 5.4e-65 252.3 346 45.4
Medtr6g093070 Medicago truncatula HOM05D005675 ORTHO05D006884 5.4e-65 252.3 345 44.3
Gohir.D08G027200 Gossypium hirsutum HOM05D005675 ORTHO05D006884 7.1e-65 251.9 346 45.4
vmacro20762 Vaccinium macrocarpon HOM05D005675 ORTHO05D006884 9.3e-65 251.5 393 43.8
CAN.G1751.7 Capsicum annuum HOM05D005675 ORTHO05D006884 2.1e-64 250.4 347 45.0
arahy.Tifrunner.gnm1.ann1.RL68NL Arachis hypogaea HOM05D005675 ORTHO05D006884 4.6e-64 249.2 345 46.1
Solyc07g017290.4 Solanum lycopersicum HOM05D005675 ORTHO05D006884 1.0e-63 248.1 346 44.5
Sopen07g006010 Solanum pennellii HOM05D005675 ORTHO05D006884 1.3e-63 247.7 346 44.8
MSTRG.26518 Avicennia marina HOM05D005675 ORTHO05D006884 2.3e-63 246.9 354 42.7
Thecc.09G196800 Theobroma cacao HOM05D005675 ORTHO05D006884 3.0e-63 246.5 325 46.8
Solyc12g017470.2 Solanum lycopersicum HOM05D005675 ORTHO05D006884 6.6e-63 245.4 347 43.8
Rhsim01G0109900 Rhododendron simsii HOM05D005675 ORTHO05D006884 8.7e-63 245.0 317 48.3
Phvul.004G178000 Phaseolus vulgaris HOM05D005675 ORTHO05D006884 1.1e-62 244.6 343 44.0
PSO170G1351 Papaver somniferum HOM05D005675 ORTHO05D006884 2.5e-62 243.4 356 45.5
Migut.L01917 Erythranthe guttata HOM05D005675 ORTHO05D006884 3.3e-62 243.0 351 43.9
Prupe.3G126100 Prunus persica HOM05D005675 ORTHO05D006884 2.1e-61 240.4 354 48.3
Nitab4.5_0014696g0010 Nicotiana tabacum HOM05D005675 ORTHO05D006884 8.1e-61 238.4 354 42.7
SalBow5G0607 Salvia bowleyana HOM05D005675 ORTHO05D006884 8.1e-61 238.4 369 42.8
HanXRQChr03g0067281 Helianthus annuus HOM05D005675 ORTHO05D006884 2.0e-59 233.8 340 45.0
Aa31LG3G3440 Aethionema arabicum HOM05D005675 ORTHO05D006884 2.6e-59 233.4 349 42.7
ECA240G2624 Erigeron canadensis HOM05D005675 ORTHO05D006884 3.4e-59 233.0 346 44.2
BolC5t34404H Brassica oleracea HOM05D005675 ORTHO05D006884 1.3e-58 231.1 350 44.6
Atru.chr2.1389 Acer truncatum HOM05D005675 ORTHO05D006884 1.7e-58 230.7 348 45.4
C05p57470 Brassica napus HOM05D005675 ORTHO05D006884 2.2e-58 230.3 350 44.0
THA.LOC104815311 Tarenaya hassleriana HOM05D005675 ORTHO05D006884 3.8e-58 229.6 349 44.4
Lsat_1_v5_gn_7_57460 Lactuca sativa HOM05D005675 ORTHO05D006884 3.2e-57 226.5 336 44.0
BraA05t22649Z Brassica rapa HOM05D005675 ORTHO05D006884 1.6e-56 224.2 350 43.4
Haze_19098 Corylus avellana HOM05D005675 ORTHO05D006884 2.7e-56 223.4 397 41.1
MBI13_g31573_MAGBIO Magnolia biondii HOM05D005675 ORTHO05D006884 1.0e-55 221.5 383 41.8
BcaC01g04171 Brassica carinata HOM05D005675 ORTHO05D006884 1.3e-55 221.1 350 42.3
A05p38580 Brassica napus HOM05D005675 ORTHO05D006884 3.9e-55 219.5 344 41.6
SGA_v2.0_scaffold21G09606 Striga asiatica HOM05D005675 ORTHO05D006884 3.3e-54 216.5 360 41.9
Oeu036952.2 Olea europaea HOM05D005675 ORTHO05D006884 4.3e-54 216.1 455 35.4
BraA03t12828Z Brassica rapa HOM05D005675 ORTHO05D006884 9.6e-54 214.9 356 41.0
AL3G45830 Arabidopsis lyrata HOM05D005675 ORTHO05D006884 1.6e-53 214.2 348 40.8
SGA_v2.0_scaffold339G49254 Striga asiatica HOM05D005675 ORTHO05D006884 2.8e-53 213.4 357 40.9
AL3G22010 Arabidopsis lyrata HOM05D005675 ORTHO05D006884 3.7e-53 213.0 349 40.7
BcaC05g29447 Brassica carinata HOM05D005675 ORTHO05D006884 6.2e-53 212.2 355 42.0
A03p36640 Brassica napus HOM05D005675 ORTHO05D006884 6.2e-53 212.2 350 40.6
BolC3t16698H Brassica oleracea HOM05D005675 ORTHO05D006884 1.1e-52 211.5 349 41.0
AT3G10572 Arabidopsis thaliana HOM05D005675 ORTHO05D006884 1.4e-52 211.1 351 41.3
Thhalv10021093m.g Eutrema salsugineum HOM05D005675 ORTHO05D006884 1.8e-52 210.7 348 40.5
Sp3g08870 Schrenkiella parvula HOM05D005675 ORTHO05D006884 2.6e-51 206.8 347 41.2
Carub.0003s0981 Capsella rubella HOM05D005675 ORTHO05D006884 2.2e-50 203.8 352 39.8
AUR62002223 Chenopodium quinoa HOM05D005675 ORTHO05D006884 4.9e-50 202.6 341 38.7
PGSC0003DMG400006457 Solanum tuberosum HOM05D005675 ORTHO05D006884 2.1e-48 197.2 306 41.2
AUR62015436 Chenopodium quinoa HOM05D005675 ORTHO05D006884 4.6e-48 196.1 333 39.3
CAN.G1751.9 Capsicum annuum HOM05D005675 ORTHO05D006884 1.0e-47 194.9 306 40.8
Ah.06g185690 Amaranthus hybridus HOM05D005675 ORTHO05D006884 1.3e-47 194.5 339 38.9
CAN.G309.91 Capsicum annuum HOM05D005675 ORTHO05D006884 3.3e-46 189.9 284 41.2
FvH4_6g26940 Fragaria vesca HOM05D005675 ORTHO05D006884 3.3e-46 189.9 264 45.8
FAN02G0472 Fragaria x ananassa HOM05D005675 ORTHO05D006884 2.1e-45 187.2 278 44.6
ATR0626G294 Amborella trichopoda HOM05D005675 ORTHO05D006884 2.4e-44 183.7 362 39.5
Hund11839 Selenicereus undatus HOM05D005675 ORTHO05D006884 5.9e-43 179.1 342 37.7
Nn8g41130 Nelumbo nucifera HOM05D005675 ORTHO05D006884 6.5e-42 175.6 187 56.1
SHI13641 Sapria himalayana HOM05D005675 ORTHO05D006884 6.5e-42 175.6 372 36.3
HPP92_010804 Vanilla planifolia HOM05D005675 ORTHO05D006884 8.5e-42 175.3 350 35.1
Os06g0702800 Oryza sativa ssp. japonica HOM05D005675 ORTHO05D006884 3.2e-41 173.3 358 33.8
Aqoxy6G03025 Aquilegia oxysepala HOM05D005675 ORTHO05D006884 4.2e-41 172.9 311 39.9
CSS0020115 Camellia sinensis var. sinensis HOM05D005675 ORTHO05D006884 9.3e-41 171.8 208 48.6
CAN.G486.3 Capsicum annuum HOM05D002496 ORTHO05D002787 4.6e-40 169.5 261 41.0
CDE05G2328 Ceratophyllum demersum HOM05D005675 ORTHO05D006884 4.6e-40 169.5 358 36.9
EL10Ac3g05860 Beta vulgaris HOM05D005675 ORTHO05D006884 1.8e-39 167.5 321 38.6
Glyma.07G130600 Glycine max HOM05D005675 ORTHO05D006884 1.5e-38 164.5 267 41.6
Sc26g0001420 Simmondsia chinensis HOM05D005675 ORTHO05D006884 4.3e-38 162.9 306 36.3
Sopen12g008260 Solanum pennellii HOM05D005675 ORTHO05D006884 1.3e-37 161.4 213 44.6
C03p44280 Brassica napus HOM05D005675 ORTHO05D006884 1.6e-37 161.0 349 34.7
TAR383G0085 Trochodendron aralioides HOM05D005675 ORTHO05D006884 4.8e-37 159.5 289 41.2
Zm00001eb227160 Zea mays HOM05D005675 ORTHO05D006884 1.7e-34 151.0 307 36.2
Lju432C7G1 Lonicera japonica HOM05D005675 ORTHO05D006884 4.2e-33 146.4 350 33.1
Nitab4.5_0000899g0040 Nicotiana tabacum HOM05D005675 ORTHO05D006884 2.7e-32 143.7 188 45.2
unitig_578.g16399 Utricularia gibba HOM05D005675 ORTHO05D006884 2.2e-29 134.0 214 41.6
Haze_19095 Corylus avellana HOM05D005675 ORTHO05D006884 2.0e-27 127.5 121 59.5
CARHR085110 Cardamine hirsuta HOM05D005675 ORTHO05D006884 7.7e-27 125.6 249 35.3
SEGI_03452 Sequoiadendron giganteum HOM05D005675 ORTHO05D006884 1.0e-26 125.2 288 33.0
PSO170G0789 Papaver somniferum HOM05D005675 ORTHO05D006884 3.0e-23 113.6 262 34.0
PSO170G4889 Papaver somniferum HOM05D005675 ORTHO05D006884 3.0e-23 113.6 262 34.0
PSO170G5374 Papaver somniferum HOM05D005675 ORTHO05D006884 3.0e-23 113.6 262 34.0
PSO170G3345 Papaver somniferum HOM05D005675 ORTHO05D006884 2.6e-22 110.5 242 33.9
Peaxi162Scf01527g00006 Petunia axillaris HOM05D005675 ORTHO05D006884 9.7e-22 108.6 215 37.2
PGSC0003DMG400009563 Solanum tuberosum HOM05D005675 ORTHO05D006884 3.1e-20 103.6 172 39.0
PSO431G0001 Papaver somniferum HOM05D005675 ORTHO05D006884 1.6e-19 101.3 224 34.8
Mapoly0082s0059 Marchantia polymorpha HOM05D005675 ORTHO05D006884 1.0e-18 98.6 407 25.6
Pp3c9_5270 Physcomitrium patens HOM05D005675 ORTHO05D006884 8.5e-18 95.5 386 25.9
CAN.G2070.2 Capsicum annuum HOM05D005675 ORTHO05D006884 2.1e-16 90.9 168 36.9
CARHR085100 Cardamine hirsuta HOM05D005675 ORTHO05D006884 6.1e-16 89.4 118 50.0
unitig_578.g16398 Utricularia gibba HOM05D005675 ORTHO05D006884 6.7e-15 85.9 98 45.9
Sopen12g008240 Solanum pennellii HOM05D005675 ORTHO05D006884 7.5e-14 82.4 90 51.1
CAN.G1703.6 Capsicum annuum HOM05D002496 ORTHO05D002787 9.7e-14 82.0 121 40.5
SMO367G0141 Selaginella moellendorffii HOM05D005675 ORTHO05D006884 4.1e-12 76.6 205 28.8
CSS0044900 Camellia sinensis var. sinensis HOM05D005675 ORTHO05D006884 1.9e-09 67.8 66 63.6
AagrBONN_evm.TU.Sc2ySwM_228.2452 Anthoceros agrestis HOM05D034800 ORTHO05D006884 2.5e-09 67.4 206 24.3
Gohir.D08G027550 Gossypium hirsutum HOM05D005675 ORTHO05D006884 2.5e-09 67.4 63 55.6
Gorai.004G024600 Gossypium raimondii HOM05D005675 ORTHO05D006884 1.4e-07 61.6 63 52.4


User provided reference genes

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