Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0020795 Sechium edule HOM05D005864 ORTHO05D006770 2.9e-209 731.9 436 100.0
MELO3C018803.2 Cucumis melo HOM05D005864 ORTHO05D006770 4.9e-140 501.9 437 64.1
ClCG02G001780 Citrullus lanatus HOM05D005864 ORTHO05D006770 1.3e-127 460.7 507 56.8
CsaV3_7G003760 Cucumis sativus L. HOM05D005864 ORTHO05D006770 1.2e-114 417.5 437 57.0
Sed0014520 Sechium edule HOM05D005864 ORTHO05D006770 2.1e-114 416.8 365 67.1
CiPaw.03G162800 Carya illinoinensis HOM05D005864 ORTHO05D006770 1.7e-71 274.2 448 45.5
CiPaw.04G117700 Carya illinoinensis HOM05D005864 ORTHO05D006770 5.4e-70 269.2 440 44.5
QL08p033779 Quercus lobata HOM05D005864 ORTHO05D006770 9.5e-67 258.5 438 43.2
Dinv39688 Davidia involucrata HOM05D005864 ORTHO05D006770 2.3e-65 253.8 439 45.8
Haze_12896 Corylus avellana HOM05D005864 ORTHO05D006770 1.3e-63 248.1 466 41.0
Thecc.02G162100 Theobroma cacao HOM05D005864 ORTHO05D006770 4.1e-62 243.0 429 38.5
Prupe.3G220100 Prunus persica HOM05D005864 ORTHO05D006770 2.1e-58 230.7 442 45.7
FvH4_6g43530 Fragaria vesca HOM05D005864 ORTHO05D006770 6.2e-58 229.2 433 39.0
Hma1.2p1_0613F.1_g189160 Hydrangea macrophylla HOM05D005864 ORTHO05D006770 4.9e-55 219.5 439 38.0
Duzib052G0164 Durio zibethinus HOM05D005864 ORTHO05D006770 1.4e-54 218.0 433 43.9
FAN14G4164 Fragaria x ananassa HOM05D005864 ORTHO05D006770 1.6e-53 214.5 452 37.6
VMungo1127G2082 Vigna mungo HOM05D005864 ORTHO05D006770 3.5e-53 213.4 432 44.7
TWI36G0516 Tripterygium wilfordii HOM05D005864 ORTHO05D006770 4.6e-53 213.0 459 35.5
GSVIVG01030622001 Vitis vinifera HOM05D005864 ORTHO05D006770 4.6e-53 213.0 442 37.3
FAN09G3055 Fragaria x ananassa HOM05D005864 ORTHO05D006770 7.8e-53 212.2 447 38.0
Glyma.12G101400 Glycine max HOM05D005864 ORTHO05D006770 1.7e-52 211.1 433 44.6
FAN05G0568 Fragaria x ananassa HOM05D005864 ORTHO05D006770 3.9e-52 209.9 431 39.2
Atru.chr6.3147 Acer truncatum HOM05D005864 ORTHO05D006770 1.1e-51 208.4 437 37.5
Lj3g0027429 Lotus japonicus HOM05D005864 ORTHO05D006770 1.1e-51 208.4 443 38.6
Nn1g07000 Nelumbo nucifera HOM05D005864 ORTHO05D006770 5.6e-51 206.1 449 37.2
Potri.007G121700 Populus trichocarpa HOM05D005864 ORTHO05D006770 1.6e-50 204.5 447 36.9
Lalb_Chr19g0135701 Lupinus albus HOM05D005864 ORTHO05D006770 2.1e-50 204.1 432 36.6
Glyma.06G306800 Glycine max HOM05D005864 ORTHO05D006770 1.1e-49 201.8 430 40.0
Actinidia12503 Actinidia chinensis HOM05D005864 ORTHO05D006770 1.8e-49 201.1 440 43.4
Cpa.g.sc8.234 Carica papaya HOM05D005864 ORTHO05D006770 1.5e-48 198.0 444 37.6
Psat7g195480 Pisum sativum HOM05D005864 ORTHO05D006770 2.6e-48 197.2 443 36.3
Phvul.011G106100 Phaseolus vulgaris HOM05D005864 ORTHO05D006770 2.2e-47 194.1 432 38.2
Gohir.D02G187200 Gossypium hirsutum HOM05D005864 ORTHO05D006770 6.0e-45 186.0 431 39.2
Medtr4g046697 Medicago truncatula HOM05D005864 ORTHO05D006770 1.3e-44 184.9 434 37.3
Eucgr.K00811 Eucalyptus grandis HOM05D005864 ORTHO05D006770 2.3e-44 184.1 437 35.0
TWI75G1887 Tripterygium wilfordii HOM05D005864 ORTHO05D006770 3.9e-44 183.3 395 34.9
arahy.Tifrunner.gnm1.ann1.VAE2IM Arachis hypogaea HOM05D005864 ORTHO05D006770 1.1e-43 181.8 504 34.7
HPP92_002197 Vanilla planifolia HOM05D005864 ORTHO05D006770 1.9e-43 181.0 456 37.9
Ciclev10015598m.g Citrus clementina HOM05D005864 ORTHO05D006770 2.5e-43 180.6 423 43.5
arahy.Tifrunner.gnm1.ann1.UG5YAZ Arachis hypogaea HOM05D005864 ORTHO05D006770 3.3e-43 180.3 506 33.8
Sc21g0001650 Simmondsia chinensis HOM05D005864 ORTHO05D006770 1.1e-41 175.3 436 34.9
Manes.12G077600 Manihot esculenta HOM05D005864 ORTHO05D006770 2.4e-41 174.1 409 36.2
Gohir.A03G163800 Gossypium hirsutum HOM05D005864 ORTHO05D006770 1.2e-40 171.8 440 37.0
Dinv18530 Davidia involucrata HOM05D005864 ORTHO05D006770 9.9e-40 168.7 284 40.5
SalBow7G0586 Salvia bowleyana HOM05D005864 ORTHO05D006770 2.2e-39 167.5 443 32.3
FAN02G2067 Fragaria x ananassa HOM05D005864 ORTHO05D006770 9.3e-38 162.2 392 36.5
CDE05G3135 Ceratophyllum demersum HOM05D005864 ORTHO05D006770 1.2e-37 161.8 451 33.0
Cc05_g05040 Coffea canephora HOM05D005864 ORTHO05D006770 2.1e-37 161.0 466 35.2
ATR0794G118 Amborella trichopoda HOM05D005864 ORTHO05D006770 1.3e-36 158.3 467 37.5
SHI10272 Sapria himalayana HOM05D005864 ORTHO05D006770 2.3e-36 157.5 424 33.0
Aqoxy4G02070 Aquilegia oxysepala HOM05D005864 ORTHO05D006770 3.3e-35 153.7 459 35.3
COL.COLO4_12982 Corchorus olitorius HOM05D005864 ORTHO05D006770 8.1e-34 149.1 398 32.2
Solyc12g005770.3 Solanum lycopersicum HOM05D005864 ORTHO05D006770 1.4e-33 148.3 478 31.2
Eucgr.K00844 Eucalyptus grandis HOM05D005864 ORTHO05D006770 1.8e-33 147.9 442 31.9
HanXRQChr07g0191611 Helianthus annuus HOM05D005864 ORTHO05D006770 4.0e-33 146.7 470 34.9
PGR142G4274 Punica granatum HOM05D005864 ORTHO05D006770 1.2e-32 145.2 443 31.4
MSTRG.6547 Avicennia marina HOM05D005864 ORTHO05D006770 2.0e-32 144.4 450 31.3
Nitab4.5_0006207g0020 Nicotiana tabacum HOM05D005864 ORTHO05D006770 2.6e-32 144.1 462 31.8
TAR624G1226 Trochodendron aralioides HOM05D005864 ORTHO05D006770 2.6e-32 144.1 311 33.8
Sabra07G0098400 Salix brachista HOM05D005864 ORTHO05D006770 4.5e-32 143.3 401 33.7
THA.LOC104809073 Tarenaya hassleriana HOM05D005864 ORTHO05D006770 1.7e-31 141.4 407 32.7
Nitab4.5_0000631g0060 Nicotiana tabacum HOM05D005864 ORTHO05D006770 3.8e-31 140.2 362 34.5
Peaxi162Scf00012g03212 Petunia axillaris HOM05D005864 ORTHO05D006770 1.4e-30 138.3 466 32.2
Ca_19101_v3 Cicer arietinum L. HOM05D005864 ORTHO05D006770 1.2e-29 135.2 396 33.6
CAN.G80.20 Capsicum annuum HOM05D005864 ORTHO05D006770 2.1e-29 134.4 453 30.5
Sopen12g001690 Solanum pennellii HOM05D005864 ORTHO05D006770 4.6e-29 133.3 465 30.3
SGA_v2.0_scaffold70G23416 Striga asiatica HOM05D005864 ORTHO05D006770 4.6e-29 133.3 432 29.4
Rhsim06G0158200 Rhododendron simsii HOM05D005864 ORTHO05D006770 1.8e-28 131.3 489 35.0
Zm00001eb207650 Zea mays HOM05D005864 ORTHO05D006770 3.0e-28 130.6 442 30.8
Gorai.005G209600 Gossypium raimondii HOM05D005864 ORTHO05D006770 1.9e-27 127.9 341 38.4
Lsat_1_v5_gn_3_43700 Lactuca sativa HOM05D005864 ORTHO05D006770 2.5e-27 127.5 401 32.4
TPR.G19040 Trifolium pratense HOM05D005864 ORTHO05D006770 3.3e-27 127.1 399 39.8
Aa31LG8G8400 Aethionema arabicum HOM05D005864 ORTHO05D006770 7.4e-27 125.9 440 31.4
ECA246G5102 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.3e-26 125.2 503 29.6
PSO675G8332 Papaver somniferum HOM05D005864 ORTHO05D006770 6.2e-26 122.9 440 29.3
Sp3g19810 Schrenkiella parvula HOM05D005864 ORTHO05D006770 1.8e-25 121.3 439 31.2
Thhalv10020800m.g Eutrema salsugineum HOM05D005864 ORTHO05D006770 3.1e-25 120.6 436 29.4
Migut.M00396 Erythranthe guttata HOM05D005864 ORTHO05D006770 5.3e-25 119.8 437 28.4
RcHm_v2.0_Chr2g0160051 Rosa chinensis HOM05D005864 ORTHO05D006770 5.3e-25 119.8 163 47.2
Os02g0161200 Oryza sativa ssp. japonica HOM05D005864 ORTHO05D006770 2.6e-24 117.5 437 29.5
Oeu041940.1 Olea europaea HOM05D005864 ORTHO05D006770 4.5e-24 116.7 427 30.7
CARHR097800 Cardamine hirsuta HOM05D005864 ORTHO05D006770 7.6e-24 115.9 438 29.9
EL10Ac9g20653 Beta vulgaris HOM05D005864 ORTHO05D006770 1.0e-23 115.5 434 37.3
unitig_699.g19613 Utricularia gibba HOM05D005864 ORTHO05D006770 1.3e-23 115.2 442 27.6
vmacro12226 Vaccinium macrocarpon HOM05D005864 ORTHO05D006770 6.5e-23 112.8 527 32.4
MD09G1105200 Malus domestica HOM05D005864 ORTHO05D006770 1.1e-22 112.1 397 36.5
TAR626G1271 Trochodendron aralioides HOM05D005864 ORTHO05D006770 1.1e-22 112.1 136 52.2
AT3G21810 Arabidopsis thaliana HOM05D005864 ORTHO05D006770 7.1e-22 109.4 461 29.1
PSO541G3214 Papaver somniferum HOM05D005864 ORTHO05D006770 1.3e-20 105.1 482 25.1
AL3G35960 Arabidopsis lyrata HOM05D005864 ORTHO05D006770 1.8e-20 104.8 375 30.1
BcaB04g20556 Brassica carinata HOM05D005864 ORTHO05D006770 1.8e-20 104.8 439 28.2
CDE05G1184 Ceratophyllum demersum HOM05D005864 ORTHO05D006770 8.7e-20 102.4 410 29.0
AUR62025062 Chenopodium quinoa HOM05D005864 ORTHO05D006770 2.1e-18 97.8 534 26.6
SEGI_09449 Sequoiadendron giganteum HOM05D005864 ORTHO05D006770 2.8e-18 97.4 405 27.4
FAN09G4739 Fragaria x ananassa HOM05D005864 ORTHO05D006770 4.8e-18 96.7 91 59.3
DCAR_021187 Daucus carota HOM05D005864 ORTHO05D006770 1.1e-17 95.5 345 30.1
unitig_85.g27303 Utricularia gibba HOM05D005864 ORTHO05D006770 1.2e-16 92.0 439 27.1
A01p33130 Brassica napus HOM05D005864 ORTHO05D006770 2.6e-16 90.9 437 27.9
CSS0029042 Camellia sinensis var. sinensis HOM05D005864 ORTHO05D006770 2.9e-15 87.4 142 44.4
RcHm_v2.0_Chr2g0160061 Rosa chinensis HOM05D005864 ORTHO05D006770 6.5e-15 86.3 196 38.8
BcaC09g49121 Brassica carinata HOM05D005864 ORTHO05D006770 1.1e-14 85.5 436 27.8
BolC1t04192H Brassica oleracea HOM05D005864 ORTHO05D006770 2.5e-14 84.3 436 27.8
Mapoly0099s0053 Marchantia polymorpha HOM05D005864 ORTHO05D006770 9.3e-14 82.4 166 41.0
AUR62037142 Chenopodium quinoa HOM05D005864 ORTHO05D006770 4.6e-13 80.1 403 27.0
Actinidia32077 Actinidia chinensis HOM05D005864 ORTHO05D006770 7.9e-13 79.3 347 27.1
C01p42370 Brassica napus HOM05D005864 ORTHO05D006770 2.3e-12 77.8 458 27.1
BraA01t03436Z Brassica rapa HOM05D005864 ORTHO05D006770 8.7e-12 75.9 445 27.2
Carub.0003s2189 Capsella rubella HOM05D005864 ORTHO05D006770 9.7e-11 72.4 396 33.3
CDE05G1677 Ceratophyllum demersum HOM05D005864 ORTHO05D006770 4.8e-10 70.1 49 63.3
PGSC0003DMG401024331 Solanum tuberosum HOM05D005864 ORTHO05D006770 4.8e-10 70.1 377 27.9
TAR626G0200 Trochodendron aralioides HOM05D005864 ORTHO05D006770 2.6e-08 64.3 161 31.7
Ah.01g003700 Amaranthus hybridus HOM05D005864 ORTHO05D006770 5.0e-07 60.1 406 24.9
Pp3c11_20880 Physcomitrium patens HOM05D005864 ORTHO05D006770 7.2e-06 56.2 190 34.2


User provided reference genes

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