Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0020685 Sechium edule HOM05D001925 ORTHO05D004257 1.5e-164 582.8 292 100.0
ClCG05G001470 Citrullus lanatus HOM05D001925 ORTHO05D004257 7.2e-127 457.6 305 79.0
Sed0006621 Sechium edule HOM05D001925 ORTHO05D004257 2.1e-126 456.1 300 81.0
CsaV3_3G008850 Cucumis sativus L. HOM05D001925 ORTHO05D004257 1.5e-124 449.9 305 78.7
MELO3C006104.2 Cucumis melo HOM05D001925 ORTHO05D004257 1.3e-123 446.8 305 77.7
Atru.chr5.510 Acer truncatum HOM05D001925 ORTHO05D004257 1.1e-74 284.3 311 54.3
Haze_15511 Corylus avellana HOM05D001925 ORTHO05D005701 2.4e-74 283.1 304 55.3
CSS0032978 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D004257 1.2e-73 280.8 312 51.6
RcHm_v2.0_Chr1g0355951 Rosa chinensis HOM05D001925 ORTHO05D004257 7.8e-73 278.1 315 54.3
Dinv32493 Davidia involucrata HOM05D001925 ORTHO05D004257 3.0e-72 276.2 313 53.4
Thecc.01G357700 Theobroma cacao HOM05D001925 ORTHO05D004257 4.3e-71 272.3 310 54.8
Duzib133G0433 Durio zibethinus HOM05D001925 ORTHO05D004257 3.6e-70 269.2 312 53.8
CANSAT21G1319 Cannabis sativa HOM05D001925 ORTHO05D004257 4.7e-70 268.9 309 52.1
Ciclev10021244m.g Citrus clementina HOM05D001925 ORTHO05D004257 6.8e-69 265.0 313 50.8
Prupe.2G172100 Prunus persica HOM05D001925 ORTHO05D004257 8.9e-69 264.6 313 51.8
QL04p053608 Quercus lobata HOM05D001925 ORTHO05D004257 1.2e-68 264.2 276 55.1
TAR375G1105 Trochodendron aralioides HOM05D001925 ORTHO05D004257 1.3e-67 260.8 314 50.6
Phvul.008G061700 Phaseolus vulgaris HOM05D001925 ORTHO05D004257 2.2e-67 260.0 313 49.8
Potri.014G086000 Populus trichocarpa HOM05D001925 ORTHO05D004257 3.7e-67 259.2 305 51.5
Duzib138G1880 Durio zibethinus HOM05D001925 ORTHO05D004257 4.9e-67 258.8 310 51.6
COL.COLO4_12725 Corchorus olitorius HOM05D001925 ORTHO05D005701 6.4e-67 258.5 307 51.8
FAN10G2559 Fragaria x ananassa HOM05D001925 ORTHO05D004257 6.4e-67 258.5 316 53.5
Gohir.D11G094100 Gossypium hirsutum HOM05D001925 ORTHO05D004257 6.4e-67 258.5 308 53.6
Glyma.09G258600 Glycine max HOM05D001925 ORTHO05D004257 8.3e-67 258.1 314 50.6
CiPaw.02G032000 Carya illinoinensis HOM05D001925 ORTHO05D004257 2.4e-66 256.5 280 53.6
FAN01G0375 Fragaria x ananassa HOM05D001925 ORTHO05D005701 3.2e-66 256.1 312 52.9
Glyma.18G234100 Glycine max HOM05D001925 ORTHO05D004257 4.1e-66 255.8 314 50.0
FAN03G0610 Fragaria x ananassa HOM05D001925 ORTHO05D004257 5.4e-66 255.4 316 53.2
Hma1.2p1_0780F.1_g216780 Hydrangea macrophylla HOM05D001925 ORTHO05D004257 5.4e-66 255.4 330 49.7
TAR629G3070 Trochodendron aralioides HOM05D001925 ORTHO05D004257 5.4e-66 255.4 314 49.0
FvH4_7g14520 Fragaria vesca HOM05D001925 ORTHO05D004257 9.2e-66 254.6 312 53.2
FAN10G1179 Fragaria x ananassa HOM05D001925 ORTHO05D004257 9.2e-66 254.6 307 53.1
Sabra14G0062300 Salix brachista HOM05D001925 ORTHO05D004257 9.2e-66 254.6 307 52.1
TWI23G0808 Tripterygium wilfordii HOM05D001925 ORTHO05D004257 9.2e-66 254.6 307 50.2
FAN06G4809 Fragaria x ananassa HOM05D001925 ORTHO05D004257 2.0e-65 253.4 312 52.9
MBI18_g02843_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D004257 2.0e-65 253.4 313 47.6
FAN06G3089 Fragaria x ananassa HOM05D001925 ORTHO05D004257 4.6e-65 252.3 312 52.9
VMungo1383G2450 Vigna mungo HOM05D001925 ORTHO05D004257 6.0e-65 251.9 312 48.7
Gohir.A11G089800 Gossypium hirsutum HOM05D001925 ORTHO05D004257 7.8e-65 251.5 308 52.6
Gorai.007G100500 Gossypium raimondii HOM05D001925 ORTHO05D004257 7.8e-65 251.5 308 52.6
arahy.Tifrunner.gnm1.ann1.IGP217 Arachis hypogaea HOM05D001925 ORTHO05D004257 2.3e-64 250.0 305 49.8
Ca_07929_v3 Cicer arietinum L. HOM05D001925 ORTHO05D004257 3.0e-64 249.6 304 48.4
vmacro20933 Vaccinium macrocarpon HOM05D001925 ORTHO05D004257 3.9e-64 249.2 310 49.7
arahy.Tifrunner.gnm1.ann1.E5DFEG Arachis hypogaea HOM05D001925 ORTHO05D004257 8.6e-64 248.1 305 49.5
Actinidia02837 Actinidia chinensis HOM05D001925 ORTHO05D004257 1.1e-63 247.7 315 49.2
Nn6g33385 Nelumbo nucifera HOM05D001925 ORTHO05D004257 1.1e-63 247.7 316 48.7
Cc02_g38170 Coffea canephora HOM05D001925 ORTHO05D004257 1.5e-63 247.3 313 50.5
Eucgr.D02304 Eucalyptus grandis HOM05D001925 ORTHO05D004257 2.5e-63 246.5 306 48.7
TPR.G37799 Trifolium pratense HOM05D001925 ORTHO05D004257 2.8e-62 243.0 309 46.9
Manes.01G255700 Manihot esculenta HOM05D001925 ORTHO05D004257 4.7e-62 242.3 308 51.9
Nn1g01562 Nelumbo nucifera HOM05D001925 ORTHO05D004257 6.2e-62 241.9 313 46.0
Medtr7g077860 Medicago truncatula HOM05D001925 ORTHO05D004257 2.3e-61 240.0 311 46.3
CiPaw.01G062900 Carya illinoinensis HOM05D001925 ORTHO05D004257 3.1e-61 239.6 303 49.2
Cfa003907 Carpinus fangiana HOM05D001925 ORTHO05D005701 8.9e-61 238.0 292 52.1
TAR374G1741 Trochodendron aralioides HOM05D001925 ORTHO05D004257 1.2e-60 237.7 319 48.0
Lj1g0025308 Lotus japonicus HOM05D001925 ORTHO05D004257 2.0e-60 236.9 308 47.7
Manes.05G033200 Manihot esculenta HOM05D001925 ORTHO05D004257 2.6e-60 236.5 306 50.3
Potri.002G160700 Populus trichocarpa HOM05D001925 ORTHO05D004257 7.5e-60 235.0 305 48.5
Peaxi162Scf00020g00730 Petunia axillaris HOM05D001925 ORTHO05D004257 1.3e-59 234.2 307 47.9
Sabra02G0127500 Salix brachista HOM05D001925 ORTHO05D004257 1.3e-59 234.2 305 48.9
Hma1.2p1_0780F.1_g216750 Hydrangea macrophylla HOM05D001925 ORTHO05D004257 2.2e-59 233.4 324 47.2
TWI59G0730 Tripterygium wilfordii HOM05D001925 ORTHO05D004257 2.2e-59 233.4 280 51.1
MD07G1135300 Malus domestica HOM05D001925 ORTHO05D004257 1.1e-58 231.1 319 47.6
MD01G1065100 Malus domestica HOM05D001925 ORTHO05D004257 3.2e-58 229.6 322 47.8
PGR031G2850 Punica granatum HOM05D001925 ORTHO05D004257 3.2e-58 229.6 303 46.2
MSTRG.14225 Avicennia marina HOM05D001925 ORTHO05D004257 5.4e-58 228.8 314 45.9
PGSC0003DMG400000175 Solanum tuberosum HOM05D001925 ORTHO05D004257 7.1e-58 228.4 313 47.0
Actinidia10041 Actinidia chinensis HOM05D001925 ORTHO05D004257 9.2e-58 228.0 280 51.4
Cpa.g.sc11.19 Carica papaya HOM05D001925 ORTHO05D004257 1.6e-57 227.3 295 48.1
GSVIVG01026948001 Vitis vinifera HOM05D001925 ORTHO05D004257 2.7e-57 226.5 297 48.5
PGR042G2528 Punica granatum HOM05D001925 ORTHO05D004257 7.8e-57 224.9 318 44.3
SalBow8G4919 Salvia bowleyana HOM05D001925 ORTHO05D004257 5.1e-56 222.2 306 45.4
THA.LOC104825845 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 8.6e-56 221.5 295 45.8
Ah.05g180510 Amaranthus hybridus HOM05D001925 ORTHO05D004257 3.3e-55 219.5 304 47.7
CAN.G78.91 Capsicum annuum HOM05D001925 ORTHO05D004257 1.6e-54 217.2 305 44.6
Nitab4.5_0000583g0190 Nicotiana tabacum HOM05D001925 ORTHO05D004257 2.8e-54 216.5 305 47.9
Rhsim07G0013800 Rhododendron simsii HOM05D001925 ORTHO05D004257 3.6e-54 216.1 282 47.5
Migut.M00740 Erythranthe guttata HOM05D001925 ORTHO05D004257 6.2e-54 215.3 310 45.5
Oeu005388.3 Olea europaea HOM05D001925 ORTHO05D004257 4.0e-53 212.6 302 43.7
Nitab4.5_0006018g0030 Nicotiana tabacum HOM05D001925 ORTHO05D004257 6.8e-53 211.8 308 46.1
Oeu031215.1 Olea europaea HOM05D001925 ORTHO05D004257 2.0e-52 210.3 310 43.9
Sopen01g038550 Solanum pennellii HOM05D001925 ORTHO05D004257 2.0e-52 210.3 301 44.2
Lj9A584T67 Lonicera japonica HOM05D001925 ORTHO05D004257 5.8e-52 208.8 274 45.6
Lalb_Chr23g0275821 Lupinus albus HOM05D001925 ORTHO05D004257 7.6e-52 208.4 300 45.7
Sp6g00430 Schrenkiella parvula HOM05D001925 ORTHO05D004257 1.3e-51 207.6 294 45.2
AUR62022581 Chenopodium quinoa HOM05D001925 ORTHO05D004257 2.9e-51 206.5 336 42.0
PSO782G1204 Papaver somniferum HOM05D001925 ORTHO05D004257 4.9e-51 205.7 286 44.8
Nitab4.5_0000386g0060 Nicotiana tabacum HOM05D001925 ORTHO05D004257 1.4e-50 204.1 304 42.1
Aa31LG5G590 Aethionema arabicum HOM05D001925 ORTHO05D004257 2.4e-50 203.4 299 44.1
Peaxi162Scf00008g02423 Petunia axillaris HOM05D001925 ORTHO05D004257 4.1e-50 202.6 308 41.2
Sc26g0000880 Simmondsia chinensis HOM05D001925 ORTHO05D004257 4.1e-50 202.6 289 45.3
Sopen10g006250 Solanum pennellii HOM05D001925 ORTHO05D004257 4.1e-50 202.6 306 41.5
Solyc10g012420.3 Solanum lycopersicum HOM05D001925 ORTHO05D004257 7.1e-50 201.8 306 41.5
Psat3g108000 Pisum sativum HOM05D001925 ORTHO05D004257 1.6e-49 200.7 279 44.4
PSO017G3573 Papaver somniferum HOM05D001925 ORTHO05D004257 1.3e-48 197.6 313 41.2
Nitab4.5_0008206g0010 Nicotiana tabacum HOM05D001925 ORTHO05D004257 1.7e-48 197.2 313 40.6
PSO063G1799 Papaver somniferum HOM05D001925 ORTHO05D004257 3.9e-48 196.1 315 41.3
Thhalv10029186m.g Eutrema salsugineum HOM05D001925 ORTHO05D004257 1.9e-47 193.7 300 43.0
Aqoxy7G00278 Aquilegia oxysepala HOM05D001925 ORTHO05D004257 1.2e-46 191.0 303 40.6
PSO478G2649 Papaver somniferum HOM05D001925 ORTHO05D004257 1.4e-45 187.6 285 43.5
CAN.G116.9 Capsicum annuum HOM05D001925 ORTHO05D004257 1.8e-45 187.2 293 41.0
TAR636G0324 Trochodendron aralioides HOM05D001925 ORTHO05D004257 1.8e-45 187.2 281 43.1
Thhalv10001583m.g Eutrema salsugineum HOM05D001925 ORTHO05D004257 8.9e-45 184.9 300 42.3
AT2G45980 Arabidopsis thaliana HOM05D001925 ORTHO05D004257 1.5e-44 184.1 298 41.6
AL4G45210 Arabidopsis lyrata HOM05D001925 ORTHO05D004257 2.0e-44 183.7 292 41.8
CARHR248450 Cardamine hirsuta HOM05D001925 ORTHO05D004257 2.6e-44 183.3 297 42.1
Hund27265 Selenicereus undatus HOM05D001925 ORTHO05D004257 2.6e-44 183.3 337 40.4
Aa31LG1G27390 Aethionema arabicum HOM05D001925 ORTHO05D004257 1.3e-43 181.0 270 40.7
Carub.0006s3688 Capsella rubella HOM05D001925 ORTHO05D004257 4.9e-43 179.1 297 40.7
A05p05970 Brassica napus HOM05D001925 ORTHO05D004257 8.4e-43 178.3 287 40.8
BraA05t19560Z Brassica rapa HOM05D001925 ORTHO05D004257 8.4e-43 178.3 287 40.8
Eucgr.E00120 Eucalyptus grandis HOM05D001925 ORTHO05D004257 8.4e-43 178.3 270 42.6
PGSC0003DMG400006504 Solanum tuberosum HOM05D001925 ORTHO05D004257 8.4e-43 178.3 276 41.3
CARHR141250 Cardamine hirsuta HOM05D001925 ORTHO05D004257 1.1e-42 177.9 291 40.5
AUR62004372 Chenopodium quinoa HOM05D001925 ORTHO05D004257 1.1e-42 177.9 333 39.9
Carub.0004s2868 Capsella rubella HOM05D001925 ORTHO05D004257 3.2e-42 176.4 286 39.9
THA.LOC104817027 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 3.2e-42 176.4 261 43.7
EL10Ac1g00401 Beta vulgaris HOM05D001925 ORTHO05D004257 4.2e-42 176.0 242 45.9
THA.LOC104802035 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 4.2e-42 176.0 283 38.9
AL6G53090 Arabidopsis lyrata HOM05D001925 ORTHO05D004257 7.1e-42 175.3 293 42.0
Rhsim01G0159000 Rhododendron simsii HOM05D001925 ORTHO05D004257 2.7e-41 173.3 269 45.4
Sp4g28050 Schrenkiella parvula HOM05D001925 ORTHO05D004257 4.6e-41 172.6 293 37.9
THA.LOC104817300 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 1.7e-40 170.6 293 39.2
unitig_749.g13536 Utricularia gibba HOM05D001925 ORTHO05D004257 1.7e-40 170.6 292 39.7
AT4G00355 Arabidopsis thaliana HOM05D001925 ORTHO05D004257 3.0e-40 169.9 295 41.0
C04p06900 Brassica napus HOM05D001925 ORTHO05D004257 6.6e-40 168.7 292 38.7
BolC4t22311H Brassica oleracea HOM05D001925 ORTHO05D004257 6.6e-40 168.7 292 38.7
ATR0680G064 Amborella trichopoda HOM05D001925 ORTHO05D004257 1.5e-39 167.5 306 40.5
SalBow3G4075 Salvia bowleyana HOM05D001925 ORTHO05D004257 1.9e-39 167.2 296 38.5
HanXRQChr13g0426611 Helianthus annuus HOM05D001925 ORTHO05D004257 2.5e-39 166.8 251 41.8
DCAR_007445 Daucus carota HOM05D001925 ORTHO05D004257 5.6e-39 165.6 276 41.7
arahy.Tifrunner.gnm1.ann1.2X3TQS Arachis hypogaea HOM05D001925 ORTHO05D004257 2.8e-38 163.3 308 40.3
ECA236G3632 Erigeron canadensis HOM05D001925 ORTHO05D004257 4.8e-38 162.5 288 38.5
Lj6A572T61 Lonicera japonica HOM05D001925 ORTHO05D004257 4.8e-38 162.5 234 44.4
Sc23g0002810 Simmondsia chinensis HOM05D001925 ORTHO05D004257 1.1e-37 161.4 268 42.5
Oeu061351.3 Olea europaea HOM05D001925 ORTHO05D004257 1.5e-36 157.5 271 38.0
SGA_v2.0_scaffold55G19707 Striga asiatica HOM05D001925 ORTHO05D004257 1.5e-36 157.5 267 39.3
C04p71970 Brassica napus HOM05D001925 ORTHO05D004257 2.0e-36 157.1 283 37.5
A04p34180 Brassica napus HOM05D001925 ORTHO05D004257 7.6e-36 155.2 284 37.7
BraA04t18879Z Brassica rapa HOM05D001925 ORTHO05D004257 7.6e-36 155.2 284 37.7
DCAR_025195 Daucus carota HOM05D001925 ORTHO05D004257 1.3e-35 154.5 301 36.5
Dinv43827 Davidia involucrata HOM05D001925 ORTHO05D005701 1.3e-35 154.5 295 39.3
BolC3t16197H Brassica oleracea HOM05D001925 ORTHO05D004257 1.7e-35 154.1 301 38.5
BcaB01g02169 Brassica carinata HOM05D001925 ORTHO05D004257 3.8e-35 152.9 297 38.0
C03p39260 Brassica napus HOM05D001925 ORTHO05D004257 3.8e-35 152.9 303 38.0
BcaC01g06884 Brassica carinata HOM05D001925 ORTHO05D004257 4.2e-34 149.4 298 38.9
Medtr2g027720 Medicago truncatula HOM05D001925 ORTHO05D004257 5.4e-34 149.1 249 40.6
Lsat_1_v5_gn_7_4301 Lactuca sativa HOM05D001925 ORTHO05D004257 1.2e-33 147.9 300 34.7
HPP92_025783 Vanilla planifolia HOM05D001925 ORTHO05D004257 2.1e-33 147.1 288 36.8
A03p32220 Brassica napus HOM05D001925 ORTHO05D004257 3.5e-33 146.4 305 37.4
BraA03t12392Z Brassica rapa HOM05D001925 ORTHO05D004257 3.5e-33 146.4 305 37.4
Migut.B01767 Erythranthe guttata HOM05D001925 ORTHO05D004257 1.9e-31 140.6 296 35.5
Actinidia20895 Actinidia chinensis HOM05D001925 ORTHO05D005701 7.4e-31 138.7 199 48.7
CDE08G0634 Ceratophyllum demersum HOM05D001925 ORTHO05D004257 9.6e-31 138.3 309 33.7
MBI17_g42624_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D004257 1.6e-30 137.5 191 42.4
Lalb_Chr11g0072911 Lupinus albus HOM05D001925 ORTHO05D004257 3.7e-30 136.3 292 37.3
BolC4t28695H Brassica oleracea HOM05D001925 ORTHO05D004257 1.5e-28 131.0 288 34.0
unitig_8.g3798 Utricularia gibba HOM05D001925 ORTHO05D004257 6.4e-27 125.6 288 33.3
HPP92_014720 Vanilla planifolia HOM05D001925 ORTHO05D004257 1.1e-26 124.8 308 34.1
CDE05G2831 Ceratophyllum demersum HOM05D001925 ORTHO05D004257 1.4e-26 124.4 249 36.1
MBI17_g35262_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D004257 2.7e-25 120.2 105 54.3
Zm00001eb318800 Zea mays HOM05D001925 ORTHO05D004257 3.9e-24 116.3 256 36.7
Zm00001eb103050 Zea mays HOM05D001925 ORTHO05D004257 5.1e-24 115.9 258 36.8
Os04g0165300 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D004257 2.4e-21 107.1 272 34.2
HanXRQChr04g0121161 Helianthus annuus HOM05D001925 ORTHO05D004257 4.0e-21 106.3 239 34.3
Os02g0821900 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D004257 4.5e-20 102.8 295 31.5
SEGI_07880 Sequoiadendron giganteum HOM05D001925 ORTHO05D004257 8.4e-19 98.6 364 26.6
Zm00001eb191080 Zea mays HOM05D001925 ORTHO05D004257 1.1e-18 98.2 284 30.6
SGA_v2.0_scaffold4G02300 Striga asiatica HOM05D001925 ORTHO05D004257 7.1e-18 95.5 278 29.9
Zm00001eb305930 Zea mays HOM05D001925 ORTHO05D004257 9.3e-18 95.1 281 28.1
Zm00001eb087910 Zea mays HOM05D001925 ORTHO05D004257 5.7e-15 85.9 223 28.7
Zm00001eb415260 Zea mays HOM05D001925 ORTHO05D004257 7.4e-15 85.5 223 29.1
SGA_v2.0_scaffold95G28831 Striga asiatica HOM05D001925 ORTHO05D004257 2.8e-14 83.6 250 29.2
Os07g0418200 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D004257 4.1e-13 79.7 279 29.4
A05p05940 Brassica napus HOM05D001925 ORTHO05D004257 1.2e-12 78.2 61 55.7
BraA05t19557Z Brassica rapa HOM05D001925 ORTHO05D004257 1.2e-12 78.2 61 55.7
C04p06870 Brassica napus HOM05D001925 ORTHO05D004257 1.3e-11 74.7 63 54.0
BolC4t22309H Brassica oleracea HOM05D001925 ORTHO05D004257 1.3e-11 74.7 63 54.0
Mapoly0022s0094 Marchantia polymorpha HOM05D001925 ORTHO05D004257 1.7e-11 74.3 78 44.9
SMO112G0035 Selaginella moellendorffii HOM05D001925 ORTHO05D004257 8.5e-11 72.0 88 44.3
SMO364G0089 Selaginella moellendorffii HOM05D001925 ORTHO05D004257 1.9e-10 70.9 88 44.3
Pp3c15_17300 Physcomitrium patens HOM05D001925 ORTHO05D004257 3.3e-07 60.1 75 38.7
Pp3c9_18340 Physcomitrium patens HOM05D001925 ORTHO05D004257 1.6e-06 57.8 75 34.7


User provided reference genes

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