Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0020654 Sechium edule HOM05D002444 ORTHO05D004748 8.7e-87 323.6 158 100.0
CsaV3_1G038300 Cucumis sativus L. HOM05D002444 ORTHO05D004748 7.5e-46 187.6 107 81.3
MELO3C029286.2 Cucumis melo HOM05D002444 ORTHO05D004748 9.8e-46 187.2 123 76.4
Lj5g0002521 Lotus japonicus HOM05D002444 ORTHO05D004748 2.3e-34 149.4 132 53.8
VMungo0720G0625 Vigna mungo HOM05D002444 ORTHO05D004748 2.5e-33 146.0 137 54.0
Glyma.10G147900 Glycine max HOM05D002444 ORTHO05D004748 7.3e-33 144.4 139 49.6
Lalb_Chr18g0046061 Lupinus albus HOM05D002444 ORTHO05D004748 6.1e-32 141.4 124 51.6
Medtr1g083900 Medicago truncatula HOM05D002444 ORTHO05D004748 6.1e-32 141.4 138 53.6
Duzib177G0976 Durio zibethinus HOM05D002444 ORTHO05D004748 4.0e-31 138.7 118 54.2
Phvul.007G200600 Phaseolus vulgaris HOM05D002444 ORTHO05D004748 5.2e-31 138.3 121 52.9
Cfa006686 Carpinus fangiana HOM05D002444 ORTHO05D004748 8.9e-31 137.5 122 52.5
Gohir.A11G272000 Gossypium hirsutum HOM05D002444 ORTHO05D004748 8.9e-31 137.5 115 53.0
Gorai.007G304800 Gossypium raimondii HOM05D002444 ORTHO05D004748 8.9e-31 137.5 113 53.1
Gohir.D11G282100 Gossypium hirsutum HOM05D002444 ORTHO05D004748 1.5e-30 136.7 113 52.2
TPR.G2633 Trifolium pratense HOM05D002444 ORTHO05D004748 1.5e-30 136.7 138 50.0
CiPaw.07G028300 Carya illinoinensis HOM05D002444 ORTHO05D004748 2.0e-30 136.3 140 49.3
Prupe.6G314800 Prunus persica HOM05D002444 ORTHO05D004748 2.0e-30 136.3 138 53.6
QL03p018315 Quercus lobata HOM05D002444 ORTHO05D004748 2.6e-30 136.0 150 48.0
Thecc.05G321400 Theobroma cacao HOM05D002444 ORTHO05D004748 1.7e-29 133.3 110 53.6
arahy.Tifrunner.gnm1.ann1.JXUF4U Arachis hypogaea HOM05D002444 ORTHO05D004748 1.1e-28 130.6 107 54.2
Atru.chr2.152 Acer truncatum HOM05D002444 ORTHO05D004748 1.8e-28 129.8 108 54.6
arahy.Tifrunner.gnm1.ann1.1Z9C7T Arachis hypogaea HOM05D002444 ORTHO05D004748 3.2e-28 129.0 107 53.3
TAR362G0953 Trochodendron aralioides HOM05D002444 ORTHO05D004748 9.2e-28 127.5 107 54.2
MD04G1195000 Malus domestica HOM05D002444 ORTHO05D004748 1.7e-26 123.2 130 50.8
Psat0s3089g0080 Pisum sativum HOM05D002444 ORTHO05D004748 1.7e-26 123.2 116 49.1
VMungo1309G0802 Vigna mungo HOM05D002444 ORTHO05D004748 1.7e-26 123.2 103 52.4
COL.COLO4_04145 Corchorus olitorius HOM05D001136 ORTHO05D001144 2.3e-26 122.9 100 57.0
Potri.005G019200 Populus trichocarpa HOM05D002444 ORTHO05D004748 2.3e-26 122.9 122 49.2
FAN09G2263 Fragaria x ananassa HOM05D002444 ORTHO05D004748 8.6e-26 120.9 124 48.4
Manes.09G176000 Manihot esculenta HOM05D002444 ORTHO05D004748 1.5e-25 120.2 136 42.6
RcHm_v2.0_Chr3g0456891 Rosa chinensis HOM05D002444 ORTHO05D004748 1.5e-25 120.2 119 49.6
GSVIVG01035038001 Vitis vinifera HOM05D002444 ORTHO05D004748 1.9e-25 119.8 96 54.2
MBI18_g28459_MAGBIO Magnolia biondii HOM05D002444 ORTHO05D004748 2.5e-25 119.4 113 48.7
FvH4_6g07260 Fragaria vesca HOM05D002444 ORTHO05D004748 7.3e-25 117.9 124 47.6
FAN14G2258 Fragaria x ananassa HOM05D002444 ORTHO05D004748 7.3e-25 117.9 124 47.6
Actinidia40354 Actinidia chinensis HOM05D002444 ORTHO05D004748 9.5e-25 117.5 97 51.5
CSS0013068 Camellia sinensis var. sinensis HOM05D002444 ORTHO05D004748 9.5e-25 117.5 112 48.2
Hund07137 Selenicereus undatus HOM05D002444 ORTHO05D004748 9.5e-25 117.5 139 43.2
COL.COLO4_34661 Corchorus olitorius HOM05D001121 ORTHO05D009235 1.6e-24 116.7 98 50.0
FAN05G3647 Fragaria x ananassa HOM05D002444 ORTHO05D004748 2.1e-24 116.3 124 46.8
Prupe.1G123300 Prunus persica HOM05D002444 ORTHO05D004748 2.1e-24 116.3 108 46.3
Glyma.09G038800 Glycine max HOM05D002444 ORTHO05D004748 2.8e-24 115.9 107 50.5
FvH4_4g19330 Fragaria vesca HOM05D002444 ORTHO05D004748 3.6e-24 115.5 112 43.8
FAN12G1068 Fragaria x ananassa HOM05D002444 ORTHO05D004748 3.6e-24 115.5 112 43.8
FAN12G3242 Fragaria x ananassa HOM05D002444 ORTHO05D004748 4.7e-24 115.2 112 42.9
Glyma.15G143900 Glycine max HOM05D002444 ORTHO05D004748 4.7e-24 115.2 107 50.5
Sp2g06560 Schrenkiella parvula HOM05D002444 ORTHO05D004748 4.7e-24 115.2 102 52.9
Thhalv10023988m.g Eutrema salsugineum HOM05D002444 ORTHO05D004748 8.0e-24 114.4 102 52.9
Lj6g0008376 Lotus japonicus HOM05D002444 ORTHO05D004748 8.0e-24 114.4 107 46.7
CsaV3_6G022510 Cucumis sativus L. HOM05D002444 ORTHO05D004748 1.0e-23 114.0 99 49.5
Phvul.009G254100 Phaseolus vulgaris HOM05D002444 ORTHO05D004748 1.0e-23 114.0 103 49.5
BcaB04g20158 Brassica carinata HOM05D002444 ORTHO05D004748 1.4e-23 113.6 102 52.0
BcaC09g49563 Brassica carinata HOM05D002444 ORTHO05D004748 1.4e-23 113.6 102 52.0
A01p27390 Brassica napus HOM05D002444 ORTHO05D004748 1.4e-23 113.6 102 52.0
BolC1t03479H Brassica oleracea HOM05D001136 ORTHO05D004748 1.4e-23 113.6 102 52.0
BraA01t02879Z Brassica rapa HOM05D002444 ORTHO05D004748 1.4e-23 113.6 102 52.0
FAN07G2635 Fragaria x ananassa HOM05D002444 ORTHO05D004748 1.4e-23 113.6 112 42.0
MD13G1157600 Malus domestica HOM05D002444 ORTHO05D004748 1.4e-23 113.6 96 47.9
AT1G56320 Arabidopsis thaliana HOM05D002444 ORTHO05D004748 2.3e-23 112.8 100 53.0
Carub.0002s0784 Capsella rubella HOM05D002444 ORTHO05D004748 2.3e-23 112.8 100 52.0
ClCG06G004730 Citrullus lanatus HOM05D002444 ORTHO05D004748 2.3e-23 112.8 124 42.7
Dinv02080 Davidia involucrata HOM05D000043 ORTHO05D000600 2.3e-23 112.8 96 50.0
Ciclev10003857m.g Citrus clementina HOM05D002444 ORTHO05D004748 3.1e-23 112.5 105 49.5
Lalb_Chr20g0120971 Lupinus albus HOM05D002444 ORTHO05D004748 3.1e-23 112.5 106 47.2
Lalb_Chr18g0058901 Lupinus albus HOM05D002444 ORTHO05D004748 4.0e-23 112.1 107 46.7
PSO170G5203 Papaver somniferum HOM05D002444 ORTHO05D004748 5.2e-23 111.7 128 43.8
AL1G65930 Arabidopsis lyrata HOM05D002444 ORTHO05D004748 6.8e-23 111.3 100 52.0
Cc03_g01110 Coffea canephora HOM05D002444 ORTHO05D004748 6.8e-23 111.3 109 48.6
MD16G1158500 Malus domestica HOM05D002444 ORTHO05D004748 6.8e-23 111.3 102 46.1
Sabra05G0025700 Salix brachista HOM05D002444 ORTHO05D004748 6.8e-23 111.3 88 55.7
Sabra08G0082100 Salix brachista HOM05D002444 ORTHO05D009235 6.8e-23 111.3 96 50.0
Sed0022311 Sechium edule HOM05D002444 ORTHO05D004748 8.9e-23 110.9 111 45.9
CiPaw.01G141700 Carya illinoinensis HOM05D002444 ORTHO05D004748 1.5e-22 110.2 108 47.2
Duzib151G1201 Durio zibethinus HOM05D002444 ORTHO05D004748 1.5e-22 110.2 88 50.0
Nn3g21645 Nelumbo nucifera HOM05D002444 ORTHO05D004748 1.5e-22 110.2 146 35.6
Nn4g25640 Nelumbo nucifera HOM05D002444 ORTHO05D004748 1.5e-22 110.2 100 50.0
Haze_01081 Corylus avellana HOM05D002444 ORTHO05D004748 2.0e-22 109.8 107 44.9
PSO210G2776 Papaver somniferum HOM05D002444 ORTHO05D004748 2.0e-22 109.8 102 46.1
PSO761G0121 Papaver somniferum HOM05D002444 ORTHO05D004748 2.0e-22 109.8 102 46.1
Psat1g159880 Pisum sativum HOM05D002444 ORTHO05D004748 2.0e-22 109.8 101 44.6
CARHR289860 Cardamine hirsuta HOM05D002444 ORTHO05D004748 2.6e-22 109.4 100 51.0
Gohir.D10G174000 Gossypium hirsutum HOM05D002444 ORTHO05D004748 2.6e-22 109.4 98 46.9
Gorai.011G194700 Gossypium raimondii HOM05D002444 ORTHO05D004748 4.4e-22 108.6 98 45.9
Gohir.A10G167900 Gossypium hirsutum HOM05D002444 ORTHO05D004748 5.8e-22 108.2 112 42.0
Peaxi162Scf00065g00322 Petunia axillaris HOM05D002444 ORTHO05D004748 5.8e-22 108.2 98 48.0
ATR0706G131 Amborella trichopoda HOM05D002444 ORTHO05D004748 7.5e-22 107.8 96 49.0
DCAR_023333 Daucus carota HOM05D002444 ORTHO05D004748 7.5e-22 107.8 113 43.4
DCAR_027017 Daucus carota HOM05D002444 ORTHO05D004748 7.5e-22 107.8 100 44.0
Rhsim04G0232700 Rhododendron simsii HOM05D002444 ORTHO05D004748 7.5e-22 107.8 101 47.5
Potri.008G108400 Populus trichocarpa HOM05D002444 ORTHO05D004748 9.8e-22 107.5 96 43.8
Thecc.04G296000 Theobroma cacao HOM05D002444 ORTHO05D004748 1.3e-21 107.1 156 35.3
TWI73G0575 Tripterygium wilfordii HOM05D002444 ORTHO05D004748 1.3e-21 107.1 147 40.8
Dinv44314 Davidia involucrata HOM05D002444 ORTHO05D004748 1.7e-21 106.7 94 48.9
QL06p011459 Quercus lobata HOM05D002444 ORTHO05D004748 1.7e-21 106.7 107 46.7
TWI09G1526 Tripterygium wilfordii HOM05D002444 ORTHO05D004748 1.7e-21 106.7 96 45.8
Medtr2g034760 Medicago truncatula HOM05D002444 ORTHO05D004748 2.2e-21 106.3 103 43.7
Atru.chr4.2965 Acer truncatum HOM05D002444 ORTHO05D004748 3.7e-21 105.5 94 46.8
C01p35210 Brassica napus HOM05D002444 ORTHO05D004748 3.7e-21 105.5 88 52.3
Nitab4.5_0000169g0080 Nicotiana tabacum HOM05D002444 ORTHO05D004748 3.7e-21 105.5 86 51.2
PGR004G0577 Punica granatum HOM05D002444 ORTHO05D004748 3.7e-21 105.5 96 46.9
THA.LOC104816880 Tarenaya hassleriana HOM05D002444 ORTHO05D004748 3.7e-21 105.5 105 46.7
Hma1.2p1_0013F.1_g008880 Hydrangea macrophylla HOM05D002444 ORTHO05D004748 4.9e-21 105.1 96 50.0
Aqoxy2G02793 Aquilegia oxysepala HOM05D002444 ORTHO05D004748 6.4e-21 104.8 96 49.0
Manes.03G202000 Manihot esculenta HOM05D002444 ORTHO05D004748 8.3e-21 104.4 109 42.2
Nitab4.5_0005333g0030 Nicotiana tabacum HOM05D002444 ORTHO05D004748 8.3e-21 104.4 85 51.8
FAN02G4223 Fragaria x ananassa HOM05D002444 ORTHO05D004748 1.4e-20 103.6 105 49.5
vmacro08072 Vaccinium macrocarpon HOM05D002444 ORTHO05D009235 1.4e-20 103.6 106 44.3
Ciclev10006963m.g Citrus clementina HOM05D002444 ORTHO05D004748 1.9e-20 103.2 89 44.9
ECA233G1761 Erigeron canadensis HOM05D002444 ORTHO05D004748 1.9e-20 103.2 105 43.8
Sopen01g026460 Solanum pennellii HOM05D002444 ORTHO05D004748 1.9e-20 103.2 92 47.8
PGSC0003DMG403007553 Solanum tuberosum HOM05D002444 ORTHO05D004748 1.9e-20 103.2 92 47.8
Lsat_1_v5_gn_2_45680 Lactuca sativa HOM05D002444 ORTHO05D004748 2.4e-20 102.8 108 46.3
Solyc01g060260.4 Solanum lycopersicum HOM05D002444 ORTHO05D004748 2.4e-20 102.8 92 47.8
DCAR_001718 Daucus carota HOM05D002444 ORTHO05D004748 3.2e-20 102.4 94 44.7
arahy.Tifrunner.gnm1.ann1.TF3LVT Arachis hypogaea HOM05D002444 ORTHO05D004748 4.1e-20 102.1 86 48.8
AUR62005275 Chenopodium quinoa HOM05D002444 ORTHO05D004748 4.1e-20 102.1 108 42.6
AUR62000681 Chenopodium quinoa HOM05D002444 ORTHO05D004748 5.4e-20 101.7 102 45.1
ECA246G3411 Erigeron canadensis HOM05D002444 ORTHO05D004748 9.2e-20 100.9 110 42.7
Lsat_1_v5_gn_6_114241 Lactuca sativa HOM05D002444 ORTHO05D004748 1.2e-19 100.5 103 47.6
QL02p088728 Quercus lobata HOM05D002444 ORTHO05D004748 1.6e-19 100.1 136 39.0
BcaC06g30700 Brassica carinata HOM05D000446 ORTHO05D000321 4.6e-19 98.6 94 45.7
Sc16g0008950 Simmondsia chinensis HOM05D002444 ORTHO05D004748 4.6e-19 98.6 94 42.6
THA.LOC109116877 Tarenaya hassleriana HOM05D002444 ORTHO05D004748 4.6e-19 98.6 111 42.3
Actinidia16853 Actinidia chinensis HOM05D002444 ORTHO05D004748 6.0e-19 98.2 133 42.1
BolC7t44514H Brassica oleracea HOM05D002444 ORTHO05D004748 6.0e-19 98.2 94 44.7
Eucgr.H04030 Eucalyptus grandis HOM05D002444 ORTHO05D004748 6.0e-19 98.2 89 49.4
HanXRQChr05g0148181 Helianthus annuus HOM05D002444 ORTHO05D004748 6.0e-19 98.2 94 45.7
SalBow5G4491 Salvia bowleyana HOM05D000356 ORTHO05D000265 6.0e-19 98.2 139 34.5
Migut.G00098 Erythranthe guttata HOM05D002444 ORTHO05D004748 7.8e-19 97.8 86 44.2
BcaNung02598 Brassica carinata HOM05D002444 ORTHO05D004748 1.0e-18 97.4 94 44.7
C07p39870 Brassica napus HOM05D000446 ORTHO05D000321 1.0e-18 97.4 94 44.7
Migut.N00054 Erythranthe guttata HOM05D002444 ORTHO05D004748 1.0e-18 97.4 92 42.4
Aa31LG2G11540 Aethionema arabicum HOM05D002444 ORTHO05D004748 1.3e-18 97.1 133 43.6
CARHR182180 Cardamine hirsuta HOM05D002444 ORTHO05D004748 1.3e-18 97.1 92 44.6
A06p38390 Brassica napus HOM05D002444 ORTHO05D004748 1.7e-18 96.7 94 44.7
BraA06t26753Z Brassica rapa HOM05D002444 ORTHO05D004748 1.7e-18 96.7 94 44.7
Zm00001eb014450 Zea mays HOM05D002444 ORTHO05D004748 1.7e-18 96.7 88 46.6
CAN.G197.18 Capsicum annuum HOM05D002444 ORTHO05D004748 2.3e-18 96.3 92 45.7
MSTRG.3869 Avicennia marina HOM05D002444 ORTHO05D004748 3.0e-18 95.9 91 45.1
Haze_04077 Corylus avellana HOM05D002444 ORTHO05D004748 3.0e-18 95.9 66 63.6
RcHm_v2.0_Chr4g0424351 Rosa chinensis HOM05D002444 ORTHO05D004748 3.9e-18 95.5 85 45.9
Thhalv10004800m.g Eutrema salsugineum HOM05D002444 ORTHO05D004748 6.6e-18 94.7 92 43.5
AL8G23000 Arabidopsis lyrata HOM05D002444 ORTHO05D004748 1.9e-17 93.2 113 38.1
Hma1.2p1_0078F.1_g040160 Hydrangea macrophylla HOM05D002444 ORTHO05D004748 1.9e-17 93.2 112 39.3
Hund03099 Selenicereus undatus HOM05D002444 ORTHO05D004748 1.9e-17 93.2 83 48.2
AT5G49350 Arabidopsis thaliana HOM05D002444 ORTHO05D004748 2.5e-17 92.8 94 39.4
Sp2g19700 Schrenkiella parvula HOM05D002444 ORTHO05D004748 2.5e-17 92.8 94 42.6
SGA_v2.0_scaffold18G08390 Striga asiatica HOM05D002444 ORTHO05D009235 2.5e-17 92.8 86 46.5
Hund11954 Selenicereus undatus HOM05D002444 ORTHO05D004748 3.3e-17 92.4 94 43.6
Lj6A687G30 Lonicera japonica HOM05D002444 ORTHO05D004748 4.3e-17 92.0 82 46.3
Os03g0304100 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 4.3e-17 92.0 119 38.7
unitig_748.g8711 Utricularia gibba HOM05D002444 ORTHO05D004748 4.3e-17 92.0 93 43.0
Carub.0008s0925 Capsella rubella HOM05D002444 ORTHO05D004748 7.3e-17 91.3 94 40.4
Os01g0253800 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 9.5e-17 90.9 81 46.9
TAR633G0381 Trochodendron aralioides HOM05D002444 ORTHO05D004748 1.2e-16 90.5 76 53.9
AUR62042953 Chenopodium quinoa HOM05D002444 ORTHO05D009235 3.6e-16 89.0 91 40.7
Ah.04g154860 Amaranthus hybridus HOM05D002444 ORTHO05D009235 6.2e-16 88.2 91 40.7
EL10Ac4g09827 Beta vulgaris HOM05D002444 ORTHO05D004748 6.2e-16 88.2 90 43.3
EL10Ac3g04919 Beta vulgaris HOM05D002444 ORTHO05D009235 1.8e-15 86.7 98 38.8
SEGI_31666 Sequoiadendron giganteum HOM05D002444 ORTHO05D004748 1.8e-15 86.7 142 33.1
AUR62016142 Chenopodium quinoa HOM05D002444 ORTHO05D004748 2.3e-15 86.3 91 38.5
arahy.Tifrunner.gnm1.ann1.84BLH7 Arachis hypogaea HOM05D002444 ORTHO05D004748 5.2e-15 85.1 83 47.0
Aa31LG11G7920 Aethionema arabicum HOM05D002444 ORTHO05D004748 6.8e-15 84.7 94 41.5
Zm00001eb285980 Zea mays HOM05D002444 ORTHO05D004748 1.2e-14 84.0 129 38.0
SHI00165 Sapria himalayana HOM05D002444 ORTHO05D004748 1.5e-14 83.6 75 46.7
HPP92_021761 Vanilla planifolia HOM05D002444 ORTHO05D004748 1.5e-14 83.6 100 38.0
HPP92_026765 Vanilla planifolia HOM05D002444 ORTHO05D004748 1.5e-14 83.6 108 37.0
Os05g0355900 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 9.8e-14 80.9 118 33.9
SalBow8G0484 Salvia bowleyana HOM05D002444 ORTHO05D004748 9.8e-14 80.9 86 38.4
SalBow8G4791 Salvia bowleyana HOM05D002444 ORTHO05D004748 9.8e-14 80.9 86 38.4
Zm00001eb127660 Zea mays HOM05D002444 ORTHO05D004748 4.9e-13 78.6 137 35.8
Lj6A687G28 Lonicera japonica HOM05D002444 ORTHO05D004748 1.6e-11 73.6 60 50.0
arahy.Tifrunner.gnm1.ann1.YQC48T Arachis hypogaea HOM05D002444 ORTHO05D004748 7.8e-11 71.2 60 53.3
HPP92_002049 Vanilla planifolia HOM05D040614 ORTHO05D036980 1.8e-07 60.1 115 32.2
Lsat_1_v5_gn_9_13661 Lactuca sativa HOM05D008739 ORTHO05D010871 2.3e-07 59.7 82 30.5
Ciclev10003751m.g Citrus clementina HOM05D002444 ORTHO05D004748 1.2e-06 57.4 66 42.4
Cfa015454 Carpinus fangiana HOM05D002444 ORTHO05D004748 1.5e-06 57.0 47 46.8
Sabra05G0012900 Salix brachista HOM05D002444 ORTHO05D004748 3.4e-06 55.8 134 32.8
HanXRQChr08g0230271 Helianthus annuus HOM05D008739 ORTHO05D010871 5.8e-06 55.1 80 31.2


User provided reference genes

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