Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0020595 Sechium edule HOM05D001860 ORTHO05D004922 4.9e-168 594.3 295 100.0
CsaV3_5G032900 Cucumis sativus L. HOM05D001860 ORTHO05D004922 3.5e-129 465.3 310 78.1
MELO3C012111.2 Cucumis melo HOM05D001860 ORTHO05D004922 1.3e-128 463.4 310 77.4
ClCG05G024130 Citrullus lanatus HOM05D001860 ORTHO05D004922 2.5e-127 459.1 304 78.9
CsaV3_5G032890 Cucumis sativus L. HOM05D001860 ORTHO05D004922 6.1e-118 427.9 320 71.9
MELO3C012110.2 Cucumis melo HOM05D001860 ORTHO05D004922 7.3e-111 404.4 348 64.9
CiPaw.06G086900 Carya illinoinensis HOM05D001860 ORTHO05D004922 1.2e-102 377.1 302 66.6
Hma1.2p1_1079F.1_g254970 Hydrangea macrophylla HOM05D001860 ORTHO05D004922 2.3e-101 372.9 255 71.0
Haze_11992 Corylus avellana HOM05D001860 ORTHO05D004922 4.0e-101 372.1 288 66.3
Manes.05G104100 Manihot esculenta HOM05D001860 ORTHO05D004922 4.0e-101 372.1 259 72.6
Cfa008963 Carpinus fangiana HOM05D001860 ORTHO05D004922 1.7e-99 366.7 332 60.2
RcHm_v2.0_Chr4g0439511 Rosa chinensis HOM05D001860 ORTHO05D004922 2.9e-99 365.9 293 63.1
FAN07G2810 Fragaria x ananassa HOM05D001860 ORTHO05D004922 3.7e-99 365.5 297 63.3
QL03p068503 Quercus lobata HOM05D001860 ORTHO05D004922 3.7e-99 365.5 260 71.5
FAN22G1600 Fragaria x ananassa HOM05D001860 ORTHO05D004922 4.1e-98 362.1 297 62.3
FAN12G1253 Fragaria x ananassa HOM05D001860 ORTHO05D004922 2.7e-97 359.4 296 62.8
CANSAT64G2732 Cannabis sativa HOM05D001860 ORTHO05D004922 7.8e-97 357.8 274 63.1
QL03p068521 Quercus lobata HOM05D001860 ORTHO05D004922 1.0e-96 357.5 267 68.9
Ciclev10032245m.g Citrus clementina HOM05D001860 ORTHO05D004922 1.7e-96 356.7 282 64.9
Potri.008G088500 Populus trichocarpa HOM05D001860 ORTHO05D004922 1.5e-95 353.6 261 67.0
TAR629G3174 Trochodendron aralioides HOM05D001860 ORTHO05D004922 3.3e-95 352.4 294 60.9
GSVIVG01019959001 Vitis vinifera HOM05D001860 ORTHO05D004922 2.1e-94 349.7 290 62.8
Atru.chr11.1760 Acer truncatum HOM05D001860 ORTHO05D004922 2.8e-94 349.4 268 67.2
Actinidia31905 Actinidia chinensis HOM05D001860 ORTHO05D004922 3.6e-94 349.0 263 66.5
TWI31G0055 Tripterygium wilfordii HOM05D001860 ORTHO05D004922 1.1e-93 347.4 258 64.7
Ca_04822_v3 Cicer arietinum L. HOM05D001860 ORTHO05D004922 1.2e-92 344.0 266 65.0
CSS0022995 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 1.5e-92 343.6 268 62.7
Lj2g0002858 Lotus japonicus HOM05D001860 ORTHO05D004922 2.0e-92 343.2 265 64.2
QL03p068489 Quercus lobata HOM05D001860 ORTHO05D004922 3.4e-92 342.4 259 69.1
arahy.Tifrunner.gnm1.ann1.0UW6S5 Arachis hypogaea HOM05D001860 ORTHO05D004922 4.4e-92 342.0 273 64.5
FvH4_4g31120 Fragaria vesca HOM05D001860 ORTHO05D004922 5.8e-92 341.7 299 60.5
MD16G1070300 Malus domestica HOM05D001860 ORTHO05D004922 1.3e-91 340.5 281 62.6
Phvul.002G083300 Phaseolus vulgaris HOM05D001860 ORTHO05D004922 2.9e-91 339.3 273 63.0
Rhsim12G0064600 Rhododendron simsii HOM05D001860 ORTHO05D004922 4.9e-91 338.6 258 64.3
Thecc.02G343500 Theobroma cacao HOM05D001860 ORTHO05D004922 6.4e-91 338.2 291 58.4
Glyma.02G109300 Glycine max HOM05D001860 ORTHO05D004922 1.1e-90 337.4 263 64.3
Hund25222 Selenicereus undatus HOM05D001860 ORTHO05D004922 3.2e-90 335.9 263 63.9
Medtr5g041780 Medicago truncatula HOM05D001860 ORTHO05D004922 1.2e-89 334.0 267 63.3
Psat2g116760 Pisum sativum HOM05D001860 ORTHO05D004922 6.0e-89 331.6 259 64.1
Duzib248G0566 Durio zibethinus HOM05D001860 ORTHO05D004922 7.8e-89 331.3 257 62.6
PSO478G0757 Papaver somniferum HOM05D001860 ORTHO05D004922 1.3e-88 330.5 267 62.9
arahy.Tifrunner.gnm1.ann1.WF3EDY Arachis hypogaea HOM05D001860 ORTHO05D004922 3.9e-88 328.9 301 57.8
arahy.Tifrunner.gnm1.ann1.F2WL4X Arachis hypogaea HOM05D001860 ORTHO05D004922 8.6e-88 327.8 301 57.8
Eucgr.B03211 Eucalyptus grandis HOM05D001860 ORTHO05D004922 8.6e-88 327.8 258 62.4
PSO017G0798 Papaver somniferum HOM05D001860 ORTHO05D004922 1.1e-87 327.4 266 62.4
EL10Ac6g13236 Beta vulgaris HOM05D001860 ORTHO05D004922 4.3e-87 325.5 259 62.2
PGSC0003DMG400020063 Solanum tuberosum HOM05D001860 ORTHO05D004922 1.2e-86 323.9 243 64.2
CAN.G771.16 Capsicum annuum HOM05D001860 ORTHO05D004922 2.8e-86 322.8 256 61.7
SalBow2G3316 Salvia bowleyana HOM05D001860 ORTHO05D004922 2.8e-86 322.8 260 62.3
Solyc06g084030.3 Solanum lycopersicum HOM05D001860 ORTHO05D004922 2.8e-86 322.8 254 62.2
Gorai.013G087000 Gossypium raimondii HOM05D001860 ORTHO05D004922 4.7e-86 322.0 259 61.4
Sopen06g035410 Solanum pennellii HOM05D001860 ORTHO05D004922 8.1e-86 321.2 254 62.6
Lsat_1_v5_gn_3_52040 Lactuca sativa HOM05D001860 ORTHO05D004922 1.1e-85 320.9 258 60.9
vmacro01268 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 1.8e-85 320.1 296 56.4
Aqoxy5G04114 Aquilegia oxysepala HOM05D001860 ORTHO05D004922 6.8e-85 318.2 265 61.5
Oeu028270.1 Olea europaea HOM05D001860 ORTHO05D004922 6.8e-85 318.2 316 54.4
MSTRG.7790 Avicennia marina HOM05D001860 ORTHO05D004922 1.2e-84 317.4 272 61.0
HanXRQChr17g0545281 Helianthus annuus HOM05D001860 ORTHO05D004922 1.2e-84 317.4 270 59.3
MBI05_g10765_MAGBIO Magnolia biondii HOM05D001860 ORTHO05D004922 1.2e-84 317.4 258 60.1
Lalb_Chr04g0255941 Lupinus albus HOM05D001860 ORTHO05D004922 1.5e-84 317.0 362 50.0
Nn3g17288 Nelumbo nucifera HOM05D001860 ORTHO05D004922 1.5e-84 317.0 266 57.5
Lj3A1035T53 Lonicera japonica HOM05D001860 ORTHO05D004922 4.4e-84 315.5 223 68.2
Peaxi162Scf01530g00038 Petunia axillaris HOM05D001860 ORTHO05D004922 6.4e-83 311.6 224 65.6
COL.COLO4_22943 Corchorus olitorius HOM05D001860 ORTHO05D004922 8.4e-83 311.2 290 56.2
AT1G69523 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 1.1e-82 310.8 269 59.5
Nitab4.5_0006433g0040 Nicotiana tabacum HOM05D001860 ORTHO05D004922 1.1e-82 310.8 220 66.4
ECA246G1483 Erigeron canadensis HOM05D001860 ORTHO05D004922 2.4e-82 309.7 282 56.4
Cc11_g12800 Coffea canephora HOM05D001860 ORTHO05D004922 4.2e-82 308.9 259 60.6
Carub.0002s1616 Capsella rubella HOM05D001860 ORTHO05D004922 9.2e-82 307.8 258 60.5
Nitab4.5_0001044g0130 Nicotiana tabacum HOM05D001860 ORTHO05D004922 2.1e-81 306.6 221 64.3
Sabra08G0066100 Salix brachista HOM05D001860 ORTHO05D004922 6.0e-81 305.1 339 50.7
TPR.G36138 Trifolium pratense HOM05D001860 ORTHO05D004922 3.9e-80 302.4 221 67.0
Migut.L01273 Erythranthe guttata HOM05D001860 ORTHO05D004922 6.6e-80 301.6 223 65.9
FAN17G3114 Fragaria x ananassa HOM05D001860 ORTHO05D004922 1.5e-79 300.4 297 56.6
DCAR_026253 Daucus carota HOM05D001016 ORTHO05D003396 3.3e-79 299.3 268 57.1
Os02g0744100 Oryza sativa ssp. japonica HOM05D001860 ORTHO05D004922 3.3e-79 299.3 259 57.5
Aa31LG4G11250 Aethionema arabicum HOM05D001860 ORTHO05D004922 5.6e-79 298.5 271 57.6
AUR62032811 Chenopodium quinoa HOM05D001860 ORTHO05D004922 1.2e-78 297.4 223 61.4
ATR0564G196 Amborella trichopoda HOM05D001860 ORTHO05D004922 1.6e-78 297.0 261 57.9
SGA_v2.0_scaffold172G38956 Striga asiatica HOM05D001860 ORTHO05D004922 2.1e-78 296.6 261 55.9
THA.LOC104822044 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 3.6e-78 295.8 336 48.5
Zm00001eb194590 Zea mays HOM05D001860 ORTHO05D004922 8.1e-78 294.7 303 51.8
BcaB03g14715 Brassica carinata HOM05D001860 ORTHO05D004922 1.1e-77 294.3 259 56.4
Sp5g24630 Schrenkiella parvula HOM05D001860 ORTHO05D004922 1.1e-77 294.3 267 58.1
A07p35850 Brassica napus HOM05D001860 ORTHO05D004922 1.4e-77 293.9 269 56.5
THA.LOC104822045 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 1.4e-77 293.9 293 52.9
Carub.0002s1617 Capsella rubella HOM05D001860 ORTHO05D004922 5.3e-77 292.0 272 54.4
BcaB03g14720 Brassica carinata HOM05D001860 ORTHO05D004922 6.9e-77 291.6 264 56.1
C06p40330 Brassica napus HOM05D001860 ORTHO05D004922 6.9e-77 291.6 269 56.9
Thhalv10018913m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 1.2e-76 290.8 272 55.1
Sp5g24640 Schrenkiella parvula HOM05D001860 ORTHO05D004922 5.8e-76 288.5 269 54.6
BcaC08g46392 Brassica carinata HOM05D001860 ORTHO05D004922 1.3e-75 287.3 264 56.8
BraA07t30786Z Brassica rapa HOM05D001860 ORTHO05D004922 2.2e-75 286.6 260 56.9
vmacro01267 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 2.2e-75 286.6 339 47.8
AT1G69526 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 2.9e-75 286.2 272 52.6
unitig_26.g10298 Utricularia gibba HOM05D001860 ORTHO05D004922 2.9e-75 286.2 283 54.1
A07p35830 Brassica napus HOM05D001860 ORTHO05D004922 4.9e-75 285.4 265 55.5
BolC6t39396H Brassica oleracea HOM05D001860 ORTHO05D004922 4.9e-75 285.4 260 55.4
BolC6t39398H Brassica oleracea HOM05D001860 ORTHO05D004922 4.9e-75 285.4 260 55.4
BraA07t31169Z Brassica rapa HOM05D001860 ORTHO05D004922 4.9e-75 285.4 265 55.5
C06p40340 Brassica napus HOM05D001860 ORTHO05D004922 6.4e-75 285.0 260 55.4
BolC6t39399H Brassica oleracea HOM05D001860 ORTHO05D004922 6.4e-75 285.0 267 55.8
A07p35840 Brassica napus HOM05D001860 ORTHO05D004922 1.4e-74 283.9 265 55.1
BraA07t31170Z Brassica rapa HOM05D001860 ORTHO05D004922 1.4e-74 283.9 263 54.4
HPP92_016837 Vanilla planifolia HOM05D001860 ORTHO05D004922 2.4e-74 283.1 296 50.0
AL2G28650 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 4.2e-74 282.3 261 55.2
BcaB03g15478 Brassica carinata HOM05D001860 ORTHO05D004922 5.4e-74 282.0 269 53.9
CARHR062460 Cardamine hirsuta HOM05D001860 ORTHO05D004922 5.4e-74 282.0 270 55.2
Carub.0002s1615 Capsella rubella HOM05D001860 ORTHO05D004922 7.1e-74 281.6 305 49.5
SEGI_35280 Sequoiadendron giganteum HOM05D001860 ORTHO05D004922 9.3e-74 281.2 276 52.9
THA.LOC104822184 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 1.2e-73 280.8 222 61.7
BraA07t31171Z Brassica rapa HOM05D001860 ORTHO05D004922 3.5e-73 279.3 259 56.0
Prupe.1G276900 Prunus persica HOM05D001860 ORTHO05D004922 4.6e-73 278.9 223 65.0
CDE04G1474 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 6.0e-73 278.5 258 53.9
BcaC08g46390 Brassica carinata HOM05D001860 ORTHO05D004922 1.6e-70 270.4 231 57.1
CDE06G2440 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 2.6e-68 263.1 223 56.1
C06p40360 Brassica napus HOM05D001860 ORTHO05D004922 1.7e-67 260.4 223 57.8
Pp3c24_6910 Physcomitrium patens HOM05D001860 ORTHO05D004922 1.7e-67 260.4 221 56.6
Mapoly0002s0191 Marchantia polymorpha HOM05D001860 ORTHO05D004922 9.3e-66 254.6 256 51.2
Gohir.A13G076700 Gossypium hirsutum HOM05D001860 ORTHO05D004922 1.3e-64 250.8 194 63.4
Gohir.D13G076400 Gossypium hirsutum HOM05D001860 ORTHO05D004922 5.1e-64 248.8 194 62.9
SMO239G0167 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 5.1e-64 248.8 258 50.8
AagrBONN_evm.TU.Sc2ySwM_368.914 Anthoceros agrestis HOM05D001860 ORTHO05D004922 1.1e-63 247.7 271 49.4
CARHR062480 Cardamine hirsuta HOM05D001860 ORTHO05D004922 3.3e-63 246.1 202 61.4
PGR102G3336 Punica granatum HOM05D001860 ORTHO05D004922 4.5e-60 235.7 176 65.9
Carub.0002s1614 Capsella rubella HOM05D001860 ORTHO05D004922 1.7e-59 233.8 201 57.7
AL2G28640 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 2.9e-59 233.0 200 58.0
CARHR062450 Cardamine hirsuta HOM05D001860 ORTHO05D004922 1.1e-58 231.1 216 56.5
AT1G69520 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 1.6e-57 227.3 202 57.4
BcaB03g14714 Brassica carinata HOM05D001860 ORTHO05D004922 1.6e-57 227.3 206 55.3
BcaC08g46388 Brassica carinata HOM05D001860 ORTHO05D004922 3.5e-57 226.1 206 54.9
A07p35820 Brassica napus HOM05D001482 ORTHO05D001499 3.5e-57 226.1 206 54.9
BolC6t39394H Brassica oleracea HOM05D001482 ORTHO05D001499 6.0e-57 225.3 206 55.3
Thhalv10019583m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 6.0e-57 225.3 206 55.8
BraA07t31168Z Brassica rapa HOM05D001482 ORTHO05D001499 7.9e-57 224.9 206 54.4
Sp5g24610 Schrenkiella parvula HOM05D001860 ORTHO05D004922 1.8e-56 223.8 201 56.7
Ah.02g129590 Amaranthus hybridus HOM05D001860 ORTHO05D004922 4.9e-51 205.7 260 44.2
CSS0019961 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 1.4e-50 204.1 165 60.6
Sc11g0002060 Simmondsia chinensis HOM05D001860 ORTHO05D004922 1.9e-50 203.8 169 64.5
C06p40380 Brassica napus HOM05D001482 ORTHO05D001499 5.5e-50 202.2 227 48.0
Dinv16666 Davidia involucrata HOM05D001860 ORTHO05D004922 5.7e-47 192.2 150 62.7
SMO137G0248 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 2.6e-44 183.3 207 47.3
Aa31LG4G11270 Aethionema arabicum HOM05D001860 ORTHO05D004922 3.4e-44 183.0 237 45.6
AUR62005816 Chenopodium quinoa HOM05D001860 ORTHO05D004922 5.9e-44 182.2 137 62.8
Sp5g24620 Schrenkiella parvula HOM05D001860 ORTHO05D004922 3.8e-43 179.5 143 61.5
Cpa.g.sc350.4 Carica papaya HOM05D001860 ORTHO05D004922 6.5e-43 178.7 173 55.5
BcaB03g14717 Brassica carinata HOM05D001860 ORTHO05D004922 1.2e-41 174.5 168 53.0
Oeu028272.1 Olea europaea HOM05D001860 ORTHO05D004922 4.3e-39 166.0 118 65.3
BcaC08g45887 Brassica carinata HOM05D001860 ORTHO05D004922 4.5e-36 156.0 138 58.0
C06p40370 Brassica napus HOM05D001860 ORTHO05D004922 3.2e-34 149.8 120 61.7
A07p31570 Brassica napus HOM05D001860 ORTHO05D004922 1.6e-33 147.5 127 59.1
C06p36870 Brassica napus HOM05D000005 ORTHO05D042562 3.9e-32 142.9 120 60.8
Thhalv10019188m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 3.9e-32 142.9 151 50.3
BolC6t38800H Brassica oleracea HOM05D000005 ORTHO05D042562 2.0e-31 140.6 120 60.0
CBR_g41443 Chara braunii HOM05D001860 ORTHO05D004922 7.4e-31 138.7 272 34.9
MCO03G556 Micromonas commoda HOM05D001860 ORTHO05D004922 1.7e-30 137.5 227 35.7
MCO09G753 Micromonas commoda HOM05D001860 ORTHO05D004922 6.3e-30 135.6 145 47.6
PRCOL_00000783 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 7.0e-29 132.1 185 41.6
Cre07.g342550 Chlamydomonas reinhardtii HOM05D001860 ORTHO05D004922 3.8e-27 126.3 251 33.5
PRCOL_00003589 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 1.1e-26 124.8 186 40.3
CSS0034144 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 2.1e-25 120.6 83 66.3
CSS0016207 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 4.4e-23 112.8 76 67.1
VMungo1383G2064 Vigna mungo HOM05D001860 ORTHO05D004922 5.0e-19 99.4 96 50.0
Actinidia19883 Actinidia chinensis HOM05D001860 ORTHO05D004922 1.2e-17 94.7 91 53.8
Thecc.01G276100 Theobroma cacao HOM05D001860 ORTHO05D004922 2.3e-16 90.5 85 50.6
arahy.Tifrunner.gnm1.ann1.661SM0 Arachis hypogaea HOM05D001860 ORTHO05D004922 5.7e-15 85.9 81 60.5
CBR_g34579 Chara braunii HOM05D001860 ORTHO05D019626 6.3e-14 82.4 180 37.8
TPR.G39184 Trifolium pratense HOM05D001860 ORTHO05D004922 5.0e-11 72.8 64 57.8
MCO03G203 Micromonas commoda HOM05D023757 ORTHO05D024904 1.6e-09 67.8 137 34.3
PRCOL_00001331 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 3.6e-09 66.6 178 27.5
AagrBONN_evm.TU.Sc2ySwM_368.1265 Anthoceros agrestis HOM05D019459 ORTHO05D019626 1.8e-08 64.3 180 31.1
CDE08G0834 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 8.8e-08 62.0 51 58.8
Cfa024139 Carpinus fangiana HOM05D001860 ORTHO05D004922 2.0e-07 60.8 218 27.5
Zm00001eb254460 Zea mays HOM05D001860 ORTHO05D004922 2.6e-07 60.5 78 46.2
MCO11G161 Micromonas commoda HOM05D019459 ORTHO05D019626 7.5e-07 58.9 134 35.1


User provided reference genes

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