Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0020527 Sechium edule HOM05D005913 ORTHO05D007138 1.6e-149 532.7 269 100.0
CsaV3_6G016190 Cucumis sativus L. HOM05D005913 ORTHO05D007138 1.1e-108 397.1 270 77.8
MELO3C025845.2 Cucumis melo HOM05D005913 ORTHO05D007138 3.9e-103 378.6 289 71.6
QL05p072708 Quercus lobata HOM05D005913 ORTHO05D007138 2.9e-90 335.9 263 66.9
TWI31G0765 Tripterygium wilfordii HOM05D005913 ORTHO05D007138 3.3e-86 322.4 263 63.1
CiPaw.13G076700 Carya illinoinensis HOM05D005913 ORTHO05D007138 1.3e-85 320.5 272 65.1
TAR633G1775 Trochodendron aralioides HOM05D005913 ORTHO05D007138 9.0e-84 314.3 259 62.5
MD11G1073200 Malus domestica HOM05D005913 ORTHO05D007138 5.8e-83 311.6 274 63.5
Prupe.6G056500 Prunus persica HOM05D005913 ORTHO05D007138 3.8e-82 308.9 271 61.3
Eucgr.J01039 Eucalyptus grandis HOM05D005913 ORTHO05D007138 1.0e-79 300.8 263 61.2
Sc21g0006400 Simmondsia chinensis HOM05D005913 ORTHO05D007138 1.8e-79 300.1 270 62.2
Sc21g0006380 Simmondsia chinensis HOM05D005913 ORTHO05D007138 2.3e-79 299.7 270 62.2
GSVIVG01024730001 Vitis vinifera HOM05D005913 ORTHO05D007138 6.7e-79 298.1 255 61.2
Cfa011705 Carpinus fangiana HOM05D005913 ORTHO05D007138 1.9e-78 296.6 274 60.6
Thecc.09G300200 Theobroma cacao HOM05D005913 ORTHO05D007138 3.3e-78 295.8 271 60.1
CSS0006724 Camellia sinensis var. sinensis HOM05D005913 ORTHO05D007138 1.3e-77 293.9 270 56.7
PGSC0003DMG400016288 Solanum tuberosum HOM05D005913 ORTHO05D007138 1.3e-77 293.9 273 59.7
Nn2g15825 Nelumbo nucifera HOM05D005913 ORTHO05D007138 3.7e-77 292.4 261 59.8
Peaxi162Scf00228g00514 Petunia axillaris HOM05D000044 ORTHO05D007138 3.7e-77 292.4 240 64.6
Solyc10g084700.2 Solanum lycopersicum HOM05D005913 ORTHO05D007138 6.3e-77 291.6 273 59.3
Sopen10g034140 Solanum pennellii HOM05D005913 ORTHO05D007138 6.3e-77 291.6 273 59.7
Dinv28648 Davidia involucrata HOM05D005913 ORTHO05D007138 8.2e-77 291.2 270 59.3
PGSC0003DMG402011001 Solanum tuberosum HOM05D005913 ORTHO05D007138 3.1e-76 289.3 273 58.6
Duzib150G0854 Durio zibethinus HOM05D005913 ORTHO05D007138 4.1e-76 288.9 271 60.1
Nitab4.5_0000037g0040 Nicotiana tabacum HOM05D005913 ORTHO05D007138 5.3e-76 288.5 223 67.3
Rhsim01G0236700 Rhododendron simsii HOM05D005913 ORTHO05D007138 6.9e-76 288.1 269 59.1
Oeu008301.1 Olea europaea HOM05D005913 ORTHO05D007138 1.2e-75 287.3 266 56.8
CAN.G324.3 Capsicum annuum HOM05D005913 ORTHO05D007138 1.5e-75 287.0 274 57.3
RcHm_v2.0_Chr5g0069871 Rosa chinensis HOM05D005913 ORTHO05D007138 7.6e-75 284.6 261 57.9
CSS0022052 Camellia sinensis var. sinensis HOM05D005913 ORTHO05D007138 1.3e-74 283.9 235 62.1
Hma1.2p1_1287F.1_g273300 Hydrangea macrophylla HOM05D005913 ORTHO05D007138 1.7e-74 283.5 275 58.2
CANSAT56G2716 Cannabis sativa HOM05D005913 ORTHO05D007138 2.2e-74 283.1 260 58.1
Cpa.g.sc112.8 Carica papaya HOM05D005913 ORTHO05D007138 6.5e-74 281.6 274 55.5
FAN11G0587 Fragaria x ananassa HOM05D005913 ORTHO05D007138 2.5e-73 279.6 260 58.5
Lsat_1_v5_gn_9_20000 Lactuca sativa HOM05D005913 ORTHO05D007138 4.2e-73 278.9 265 57.7
ECA247G1367 Erigeron canadensis HOM05D005913 ORTHO05D007138 9.3e-73 277.7 261 56.7
FvH4_3g38720 Fragaria vesca HOM05D005913 ORTHO05D007138 1.6e-72 276.9 260 58.5
Lalb_Chr19g0128221 Lupinus albus HOM05D005913 ORTHO05D007138 2.1e-72 276.6 269 59.1
Haze_24336 Corylus avellana HOM05D005913 ORTHO05D007138 6.1e-72 275.0 351 48.1
Gorai.013G259900 Gossypium raimondii HOM05D005913 ORTHO05D007138 7.9e-72 274.6 267 58.8
AUR62020144 Chenopodium quinoa HOM05D005913 ORTHO05D007138 2.3e-71 273.1 267 57.3
Gohir.D13G228900 Gossypium hirsutum HOM05D005913 ORTHO05D007138 2.3e-71 273.1 267 58.4
FAN25G2063 Fragaria x ananassa HOM05D005913 ORTHO05D007138 6.7e-71 271.6 260 56.9
FAN21G0630 Fragaria x ananassa HOM05D005913 ORTHO05D007138 1.1e-70 270.8 260 57.3
AUR62001638 Chenopodium quinoa HOM05D005913 ORTHO05D007138 2.5e-70 269.6 267 56.6
Gohir.A13G224200 Gossypium hirsutum HOM05D005913 ORTHO05D007138 3.3e-70 269.2 266 58.3
MSTRG.24154 Avicennia marina HOM05D005913 ORTHO05D007138 1.6e-69 266.9 267 54.7
Dinv25093 Davidia involucrata HOM05D005913 ORTHO05D007138 1.6e-69 266.9 270 57.8
TAR369G0609 Trochodendron aralioides HOM05D005913 ORTHO05D007138 2.8e-69 266.2 243 58.4
SGA_v2.0_scaffold25G11107 Striga asiatica HOM05D005913 ORTHO05D007138 4.8e-69 265.4 267 55.1
vmacro14595 Vaccinium macrocarpon HOM05D005913 ORTHO05D007138 8.2e-69 264.6 237 61.2
Ca_09509_v3 Cicer arietinum L. HOM05D000390 ORTHO05D007138 1.1e-68 264.2 263 56.7
Ca_30058_v3 Cicer arietinum L. HOM05D000390 ORTHO05D007138 1.1e-68 264.2 263 56.7
Sabra06G0131300 Salix brachista HOM05D005913 ORTHO05D007138 1.8e-68 263.5 262 55.7
Potri.006G170500 Populus trichocarpa HOM05D005913 ORTHO05D007138 2.4e-68 263.1 259 57.1
Manes.10G106300 Manihot esculenta HOM05D005913 ORTHO05D007138 3.1e-68 262.7 276 54.7
QL01p038500 Quercus lobata HOM05D005913 ORTHO05D007138 4.1e-68 262.3 217 65.0
FAN16G2194 Fragaria x ananassa HOM05D005913 ORTHO05D007138 1.2e-67 260.8 261 56.7
Glyma.05G235600 Glycine max HOM05D005913 ORTHO05D007138 1.5e-67 260.4 265 55.5
HanXRQChr16g0518331 Helianthus annuus HOM05D005913 ORTHO05D007138 2.6e-67 259.6 259 56.8
LjContig00155g0009730 Lotus japonicus HOM05D005913 ORTHO05D007138 1.3e-66 257.3 256 59.0
Migut.N03298 Erythranthe guttata HOM05D005913 ORTHO05D007138 2.2e-66 256.5 265 55.5
VMungo0647G0764 Vigna mungo HOM05D005913 ORTHO05D007138 5.0e-66 255.4 263 55.1
Ciclev10029073m.g Citrus clementina HOM05D005913 ORTHO05D007138 1.4e-65 253.8 264 53.0
PGR044G1475 Punica granatum HOM05D005913 ORTHO05D007138 1.4e-65 253.8 226 58.0
PSO675G7356 Papaver somniferum HOM05D005913 ORTHO05D007138 2.1e-64 250.0 254 52.8
Psat3g002480 Pisum sativum HOM05D005913 ORTHO05D007138 5.1e-63 245.4 263 53.6
Hund09257 Selenicereus undatus HOM05D005913 ORTHO05D007138 6.7e-63 245.0 265 54.7
arahy.Tifrunner.gnm1.ann1.6RYY2X Arachis hypogaea HOM05D005913 ORTHO05D007138 1.5e-62 243.8 212 60.8
Lj3A585T46 Lonicera japonica HOM05D005913 ORTHO05D007138 3.3e-62 242.7 229 58.1
Peaxi162Scf00384g00045 Petunia axillaris HOM05D005913 ORTHO05D007138 4.4e-62 242.3 236 56.8
ATR0681G105 Amborella trichopoda HOM05D005913 ORTHO05D007138 5.7e-62 241.9 253 55.3
PSO339G4526 Papaver somniferum HOM05D005913 ORTHO05D007138 9.7e-62 241.1 254 52.0
Phvul.001G033300 Phaseolus vulgaris HOM05D005913 ORTHO05D007138 9.7e-62 241.1 301 49.5
PSO801G0017 Papaver somniferum HOM05D005913 ORTHO05D007138 1.7e-61 240.4 254 52.0
Medtr7g117410 Medicago truncatula HOM05D005913 ORTHO05D007138 1.2e-59 234.2 268 54.5
Actinidia16099 Actinidia chinensis HOM05D005913 ORTHO05D007138 7.7e-59 231.5 213 59.6
DCAR_002129 Daucus carota HOM05D005913 ORTHO05D007138 1.0e-58 231.1 272 50.4
Cc01_g14290 Coffea canephora HOM05D005913 ORTHO05D007138 1.3e-58 230.7 213 57.7
Aqoxy4G02545 Aquilegia oxysepala HOM05D005913 ORTHO05D007138 5.0e-58 228.8 247 53.4
CDE04G2145 Ceratophyllum demersum HOM05D005913 ORTHO05D007138 1.9e-57 226.9 240 55.4
ClCG02G019520 Citrullus lanatus HOM05D005913 ORTHO05D007138 5.5e-57 225.3 177 69.5
COL.COLO4_19170 Corchorus olitorius HOM05D005913 ORTHO05D001548 3.6e-56 222.6 245 52.7
DCAR_012499 Daucus carota HOM05D005913 ORTHO05D007138 7.9e-56 221.5 226 55.8
EL10Ac7g16180 Beta vulgaris HOM05D005913 ORTHO05D007138 5.2e-55 218.8 243 53.1
HPP92_028632 Vanilla planifolia HOM05D005913 ORTHO05D007138 4.8e-53 212.2 215 59.1
Ah.15g099480 Amaranthus hybridus HOM05D005913 ORTHO05D007138 7.0e-52 208.4 259 48.3
CARHR006930 Cardamine hirsuta HOM05D005913 ORTHO05D007138 1.7e-50 203.8 264 45.5
Thhalv10008508m.g Eutrema salsugineum HOM05D005913 ORTHO05D007138 2.9e-50 203.0 272 46.0
CDE04G2770 Ceratophyllum demersum HOM05D005913 ORTHO05D007138 5.5e-49 198.7 242 52.5
Sp1g05970 Schrenkiella parvula HOM05D005913 ORTHO05D007138 7.2e-49 198.4 272 47.1
Aa31LG1G6450 Aethionema arabicum HOM05D005913 ORTHO05D007138 9.4e-49 198.0 230 48.7
SalBow6G3913 Salvia bowleyana HOM05D005913 ORTHO05D007138 1.2e-48 197.6 353 39.7
HPP92_002930 Vanilla planifolia HOM05D005913 ORTHO05D007138 2.1e-48 196.8 202 57.4
Carub.0001s0651 Capsella rubella HOM05D005913 ORTHO05D007138 4.7e-48 195.7 267 46.1
Lj4A493T9 Lonicera japonica HOM05D005913 ORTHO05D007138 5.2e-47 192.2 240 47.9
Os10g0500500 Oryza sativa ssp. japonica HOM05D005913 ORTHO05D007138 7.5e-46 188.3 234 49.1
A10p05770 Brassica napus HOM05D005913 ORTHO05D007138 2.2e-45 186.8 277 42.6
C05p05290 Brassica napus HOM05D005913 ORTHO05D007138 2.2e-45 186.8 268 45.1
BolC5t29300H Brassica oleracea HOM05D005913 ORTHO05D007138 2.2e-45 186.8 268 45.1
BraA10t42838Z Brassica rapa HOM05D005913 ORTHO05D007138 2.2e-45 186.8 277 42.6
A09p66580 Brassica napus HOM05D005913 ORTHO05D007138 6.3e-45 185.3 267 42.7
AL1G17350 Arabidopsis lyrata HOM05D005913 ORTHO05D007138 8.2e-45 184.9 277 44.4
BolC8t52604H Brassica oleracea HOM05D005913 ORTHO05D007138 1.8e-44 183.7 267 42.3
AT1G07210 Arabidopsis thaliana HOM05D005913 ORTHO05D007138 2.4e-44 183.3 277 44.4
Zm00001eb012770 Zea mays HOM05D005913 ORTHO05D007138 4.1e-44 182.6 245 43.7
BraA09t41996Z Brassica rapa HOM05D005913 ORTHO05D007138 7.0e-44 181.8 267 42.7
C08p50760 Brassica napus HOM05D005913 ORTHO05D007138 2.7e-43 179.9 288 40.6
Zm00001eb142300 Zea mays HOM05D005913 ORTHO05D007138 1.0e-42 177.9 155 58.7
BcaC07g42020 Brassica carinata HOM05D005913 ORTHO05D007138 1.7e-42 177.2 288 40.3
BcaC07g42452 Brassica carinata HOM05D005913 ORTHO05D007138 3.6e-40 169.5 182 52.2
TPR.G37238 Trifolium pratense HOM05D005913 ORTHO05D007138 6.8e-39 165.2 227 49.3
MD03G1068700 Malus domestica HOM05D005913 ORTHO05D007138 2.8e-37 159.8 101 81.2
unitig_26.g9973 Utricularia gibba HOM05D005913 ORTHO05D007138 4.8e-37 159.1 107 74.8
BcaB07g33371 Brassica carinata HOM05D005913 ORTHO05D007138 2.8e-32 143.3 167 47.3
BcaC07g42451 Brassica carinata HOM05D005913 ORTHO05D007138 1.4e-31 141.0 97 69.1
Atru.chr3.4201 Acer truncatum HOM05D005913 ORTHO05D007138 2.3e-31 140.2 175 45.7
TPR.G4738 Trifolium pratense HOM05D005913 ORTHO05D007138 5.9e-27 125.6 162 48.8
Mapoly0046s0093 Marchantia polymorpha HOM05D005913 ORTHO05D007138 1.9e-25 120.6 204 39.2
Pp3c9_1670 Physcomitrium patens HOM05D005913 ORTHO05D007138 3.3e-25 119.8 209 38.8
TPR.G3936 Trifolium pratense HOM05D005913 ORTHO05D007138 9.5e-25 118.2 80 73.8
arahy.Tifrunner.gnm1.ann1.6CR394 Arachis hypogaea HOM05D005913 ORTHO05D007138 1.2e-24 117.9 80 75.0
MD03G1068600 Malus domestica HOM05D005913 ORTHO05D007138 4.7e-24 115.9 122 53.3
SEGI_23907 Sequoiadendron giganteum HOM05D005913 ORTHO05D007138 1.5e-22 110.9 145 45.5
SEGI_13957 Sequoiadendron giganteum HOM05D005913 ORTHO05D007138 4.1e-20 102.8 77 64.9
AagrBONN_evm.TU.Sc2ySwM_362.942 Anthoceros agrestis HOM05D005913 ORTHO05D007138 1.6e-19 100.9 210 36.2
Atru.chr3.4202 Acer truncatum HOM05D005913 ORTHO05D007138 1.3e-18 97.8 67 76.1
Peaxi162Scf00378g00212 Petunia axillaris HOM05D000011 ORTHO05D010520 2.3e-15 87.0 48 91.7
Solyc01g058530.4 Solanum lycopersicum HOM05D005913 ORTHO05D007138 5.2e-15 85.9 63 65.1
SHI19145 Sapria himalayana HOM05D000002 ORTHO05D000001 4.1e-12 76.3 122 42.6
TPR.G39004 Trifolium pratense HOM05D006629 ORTHO05D008430 3.5e-11 73.2 146 37.7
CBR_g41534 Chara braunii HOM05D005913 ORTHO05D007138 6.0e-11 72.4 70 51.4
CARHR102160 Cardamine hirsuta HOM05D005913 ORTHO05D007138 1.2e-08 64.7 89 43.8


User provided reference genes

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