Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0020493 Sechium edule HOM05D005430 ORTHO05D007814 1.2e-79 299.7 143 100.0
Sed0021677 Sechium edule HOM05D005430 ORTHO05D007814 1.1e-72 276.6 143 90.2
MELO3C006342.2 Cucumis melo HOM05D005430 ORTHO05D007814 9.4e-72 273.5 143 90.9
CsaV3_3G011340 Cucumis sativus L. HOM05D005430 ORTHO05D007814 1.0e-62 243.4 119 94.1
ClCG05G003630 Citrullus lanatus HOM05D005430 ORTHO05D007814 1.4e-62 243.0 117 93.2
Prupe.1G058400 Prunus persica HOM05D005430 ORTHO05D007814 1.5e-53 213.0 143 66.4
FvH4_4g05670 Fragaria vesca HOM05D005430 ORTHO05D007814 2.0e-53 212.6 143 67.1
RcHm_v2.0_Chr4g0396841 Rosa chinensis HOM05D005430 ORTHO05D007814 4.4e-53 211.5 143 67.1
FAN17G1087 Fragaria x ananassa HOM05D005430 ORTHO05D007814 1.3e-52 209.9 142 66.2
Sed0023963 Sechium edule HOM05D005430 ORTHO05D007814 2.8e-52 208.8 145 69.0
MD16G1234100 Malus domestica HOM05D005430 ORTHO05D007814 1.1e-51 206.8 142 64.8
QL06p023021 Quercus lobata HOM05D005430 ORTHO05D007814 1.8e-51 206.1 123 72.4
FAN12G0934 Fragaria x ananassa HOM05D005430 ORTHO05D007814 3.1e-51 205.3 141 66.0
QL11p023894 Quercus lobata HOM05D005430 ORTHO05D007814 7.0e-51 204.1 123 71.5
Potri.003G175200 Populus trichocarpa HOM05D005430 ORTHO05D007814 2.0e-50 202.6 142 66.2
Cpa.g.sc59.85 Carica papaya HOM05D005430 ORTHO05D007814 4.5e-50 201.4 141 67.4
MD13G1228600 Malus domestica HOM05D005430 ORTHO05D007814 5.9e-50 201.1 142 66.2
MELO3C023093.2 Cucumis melo HOM05D005430 ORTHO05D007814 7.7e-50 200.7 144 66.0
FAN07G2372 Fragaria x ananassa HOM05D005430 ORTHO05D007814 7.7e-50 200.7 124 70.2
CiPaw.01G204600 Carya illinoinensis HOM05D005430 ORTHO05D007814 5.0e-49 198.0 117 75.2
Sabra01G0037500 Salix brachista HOM05D006492 ORTHO05D008432 8.5e-49 197.2 125 70.4
Sabra03G0128400 Salix brachista HOM05D005430 ORTHO05D007814 1.1e-48 196.8 141 65.2
FAN22G2342 Fragaria x ananassa HOM05D005430 ORTHO05D007814 1.5e-48 196.4 124 68.5
Haze_11548 Corylus avellana HOM05D005430 ORTHO05D007814 1.9e-48 196.1 147 63.9
Potri.001G053100 Populus trichocarpa HOM05D005430 ORTHO05D007814 2.5e-48 195.7 142 63.4
Cfa014874 Carpinus fangiana HOM05D005430 ORTHO05D007814 9.4e-48 193.7 141 64.5
QL12p006673 Quercus lobata HOM05D005430 ORTHO05D007814 1.6e-47 193.0 146 64.4
Manes.03G153100 Manihot esculenta HOM05D005430 ORTHO05D007814 2.1e-47 192.6 142 63.4
CsaV3_2G012000 Cucumis sativus L. HOM05D005430 ORTHO05D007814 3.6e-47 191.8 123 69.9
QL05p063758 Quercus lobata HOM05D005430 ORTHO05D007814 4.7e-47 191.4 125 69.6
Duzib212G0862 Durio zibethinus HOM05D005430 ORTHO05D007814 1.0e-46 190.3 143 63.6
Thecc.04G212700 Theobroma cacao HOM05D005430 ORTHO05D007814 1.4e-46 189.9 143 64.3
QL05p063717 Quercus lobata HOM05D005430 ORTHO05D007814 2.3e-46 189.1 113 73.5
Atru.chr4.1803 Acer truncatum HOM05D005430 ORTHO05D007814 3.0e-46 188.7 142 65.5
Ciclev10006174m.g Citrus clementina HOM05D005430 ORTHO05D007814 4.0e-46 188.3 142 61.3
Sed0027066 Sechium edule HOM05D005430 ORTHO05D007814 6.8e-46 187.6 143 62.2
Gohir.A10G120900 Gossypium hirsutum HOM05D005430 ORTHO05D007814 8.8e-46 187.2 143 63.6
Gohir.D10G145400 Gossypium hirsutum HOM05D005430 ORTHO05D007814 8.8e-46 187.2 143 63.6
Gorai.011G162600 Gossypium raimondii HOM05D005430 ORTHO05D007814 8.8e-46 187.2 143 63.6
Manes.15G049100 Manihot esculenta HOM05D005430 ORTHO05D007814 1.5e-45 186.4 142 61.3
Dinv38286 Davidia involucrata HOM05D005430 ORTHO05D007814 1.7e-44 183.0 118 69.5
COL.COLO4_34091 Corchorus olitorius HOM05D005430 ORTHO05D007814 3.7e-44 181.8 124 67.7
TWI73G0050 Tripterygium wilfordii HOM05D005430 ORTHO05D007814 1.8e-43 179.5 145 61.4
Eucgr.H00103 Eucalyptus grandis HOM05D005430 ORTHO05D007814 5.4e-43 177.9 145 62.8
THA.LOC104821619 Tarenaya hassleriana HOM05D005430 ORTHO05D007814 5.9e-42 174.5 137 60.6
CANSAT78G1772 Cannabis sativa HOM05D005430 ORTHO05D007814 1.3e-41 173.3 138 58.0
CANSAT78G2053 Cannabis sativa HOM05D005430 ORTHO05D007814 1.3e-41 173.3 138 58.0
VMungo0540G1768 Vigna mungo HOM05D005430 ORTHO05D007814 1.3e-41 173.3 112 65.2
Lsat_1_v5_gn_6_62741 Lactuca sativa HOM05D005430 ORTHO05D007814 2.3e-41 172.6 115 65.2
CSS0041852 Camellia sinensis var. sinensis HOM05D005430 ORTHO05D007814 6.5e-41 171.0 140 60.7
Psat1g167840 Pisum sativum HOM05D005430 ORTHO05D007814 3.3e-40 168.7 146 55.5
GSVIVG01029041001 Vitis vinifera HOM05D005430 ORTHO05D007814 3.3e-40 168.7 142 57.0
Glyma.09G023500 Glycine max HOM05D005430 ORTHO05D007814 9.5e-40 167.2 112 62.5
Phvul.006G128700 Phaseolus vulgaris HOM05D005430 ORTHO05D007814 1.6e-39 166.4 146 54.1
TPR.G26356 Trifolium pratense HOM05D005430 ORTHO05D007814 1.6e-39 166.4 146 55.5
Medtr2g030100 Medicago truncatula HOM05D005430 ORTHO05D007814 2.1e-39 166.0 146 53.4
Lalb_Chr15g0088741 Lupinus albus HOM05D005430 ORTHO05D007814 2.8e-39 165.6 138 58.0
Glyma.15G129600 Glycine max HOM05D005430 ORTHO05D007814 4.7e-39 164.9 146 54.1
TPR.G26323 Trifolium pratense HOM05D005430 ORTHO05D007814 1.4e-38 163.3 137 54.0
arahy.Tifrunner.gnm1.ann1.D09HZI Arachis hypogaea HOM05D005430 ORTHO05D007814 2.3e-38 162.5 137 53.3
CAN.G1745.2 Capsicum annuum HOM05D005430 ORTHO05D007814 4.0e-38 161.8 144 54.2
HanXRQChr07g0185851 Helianthus annuus HOM05D005430 ORTHO05D007814 4.0e-38 161.8 149 55.7
Thhalv10003022m.g Eutrema salsugineum HOM05D005430 ORTHO05D007814 6.8e-38 161.0 142 54.2
Medtr2g030080 Medicago truncatula HOM05D005430 ORTHO05D007814 6.8e-38 161.0 146 52.1
Hma1.2p1_0903F.1_g235070 Hydrangea macrophylla HOM05D005430 ORTHO05D007814 2.0e-37 159.5 144 52.1
Oeu033089.1 Olea europaea HOM05D005430 ORTHO05D007814 2.0e-37 159.5 143 54.5
Oeu041168.1 Olea europaea HOM05D005430 ORTHO05D007814 4.4e-37 158.3 137 54.7
Solyc09g091360.1 Solanum lycopersicum HOM05D005430 ORTHO05D007814 4.4e-37 158.3 142 50.7
AL8G20530 Arabidopsis lyrata HOM05D005430 ORTHO05D007814 5.7e-37 157.9 122 58.2
AT3G24060 Arabidopsis thaliana HOM05D005430 ORTHO05D007814 5.7e-37 157.9 141 52.5
Sp3g21900 Schrenkiella parvula HOM05D005430 ORTHO05D007814 5.7e-37 157.9 138 54.3
AL3G39310 Arabidopsis lyrata HOM05D005430 ORTHO05D007814 9.8e-37 157.1 141 52.5
Solyc12g098110.1 Solanum lycopersicum HOM05D005430 ORTHO05D007814 1.7e-36 156.4 112 60.7
Sopen12g032930 Solanum pennellii HOM05D005430 ORTHO05D007814 1.7e-36 156.4 112 60.7
PGSC0003DMG400016877 Solanum tuberosum HOM05D005430 ORTHO05D007814 2.8e-36 155.6 112 60.7
Rhsim06G0013100 Rhododendron simsii HOM05D005430 ORTHO05D007814 3.7e-36 155.2 119 59.7
CAN.G706.30 Capsicum annuum HOM05D005430 ORTHO05D007814 1.1e-35 153.7 148 52.7
Sc13g0002820 Simmondsia chinensis HOM05D005430 ORTHO05D007814 1.4e-35 153.3 134 52.2
CARHR100160 Cardamine hirsuta HOM05D005430 ORTHO05D007814 1.8e-35 152.9 126 55.6
Carub.0003s2446 Capsella rubella HOM05D005430 ORTHO05D007814 4.1e-35 151.8 122 55.7
SGA_v2.0_scaffold2G00855 Striga asiatica HOM05D005430 ORTHO05D007814 5.4e-35 151.4 112 61.6
BcaB04g20397 Brassica carinata HOM05D005430 ORTHO05D007814 1.6e-34 149.8 137 53.3
A01p31010 Brassica napus HOM05D005430 ORTHO05D007814 2.7e-34 149.1 137 51.8
BraA01t03227Z Brassica rapa HOM05D005430 ORTHO05D007814 2.7e-34 149.1 137 51.8
Migut.N00331 Erythranthe guttata HOM05D005430 ORTHO05D007814 7.8e-34 147.5 138 52.2
HanXRQChr02g0059521 Helianthus annuus HOM05D005430 ORTHO05D007814 1.0e-33 147.1 142 47.9
SalBow3G0850 Salvia bowleyana HOM05D005430 ORTHO05D007814 1.5e-32 143.3 115 57.4
BolC1t03901H Brassica oleracea HOM05D005430 ORTHO05D007814 6.8e-30 134.4 130 50.0
Nitab4.5_0008614g0010 Nicotiana tabacum HOM05D005430 ORTHO05D007814 6.8e-30 134.4 126 53.2
SHI00018 Sapria himalayana HOM05D005430 ORTHO05D007814 6.8e-30 134.4 125 52.0
C01p39510 Brassica napus HOM05D005430 ORTHO05D007814 1.2e-29 133.7 130 49.2
EL10Ac3g06777 Beta vulgaris HOM05D005430 ORTHO05D007814 7.0e-27 124.4 99 57.6
vmacro22822 Vaccinium macrocarpon HOM05D005430 ORTHO05D007814 6.6e-25 117.9 114 52.6
Actinidia25081 Actinidia chinensis HOM05D005430 ORTHO05D007814 1.1e-22 110.5 111 55.9
Migut.G00603 Erythranthe guttata HOM05D005430 ORTHO05D007814 5.4e-19 98.2 115 41.7
Duzib212G0436 Durio zibethinus HOM05D005430 ORTHO05D007814 1.3e-17 93.6 146 32.9
Nitab4.5_0003185g0070 Nicotiana tabacum HOM05D005430 ORTHO05D007814 5.0e-17 91.7 89 53.9
RcHm_v2.0_Chr4g0396551 Rosa chinensis HOM05D005430 ORTHO05D000119 8.6e-17 90.9 111 37.8
COL.COLO4_34097 Corchorus olitorius HOM05D005430 ORTHO05D007814 2.5e-16 89.4 148 34.5
Gohir.A09G053500 Gossypium hirsutum HOM05D005430 ORTHO05D000119 5.6e-16 88.2 141 34.8
Gorai.006G055200 Gossypium raimondii HOM05D005430 ORTHO05D007814 9.5e-16 87.4 141 34.0
COL.COLO4_34098 Corchorus olitorius HOM05D000048 ORTHO05D000207 2.1e-15 86.3 126 32.5
SalBow2G0067 Salvia bowleyana HOM05D005430 ORTHO05D000119 3.6e-15 85.5 141 34.0
Thecc.04G213200 Theobroma cacao HOM05D005430 ORTHO05D007814 4.7e-15 85.1 147 32.0
Gohir.D09G053032 Gossypium hirsutum HOM05D005430 ORTHO05D007814 6.2e-15 84.7 141 34.8
Cpa.g.sc59.81 Carica papaya HOM05D005430 ORTHO05D000119 8.1e-15 84.3 140 34.3
Hma1.2p1_0146F.1_g065570 Hydrangea macrophylla HOM05D005430 ORTHO05D000119 8.1e-15 84.3 120 40.0
Migut.H02432 Erythranthe guttata HOM05D005430 ORTHO05D000119 6.8e-14 81.3 107 36.4
Cpa.g.sc169.24 Carica papaya HOM05D000256 ORTHO05D000119 8.9e-14 80.9 136 31.6
COL.COLO4_34096 Corchorus olitorius HOM05D005430 ORTHO05D007814 8.9e-14 80.9 122 32.0
Thecc.04G213100 Theobroma cacao HOM05D005430 ORTHO05D007814 1.2e-13 80.5 122 32.8
Gohir.D09G053020 Gossypium hirsutum HOM05D005430 ORTHO05D007814 2.6e-13 79.3 150 33.3
Duzib151G1037 Durio zibethinus HOM05D005430 ORTHO05D007814 4.4e-13 78.6 117 31.6
Oeu024845.1 Olea europaea HOM05D005430 ORTHO05D007814 4.4e-13 78.6 111 34.2
Gorai.006G055400 Gossypium raimondii HOM05D005430 ORTHO05D007814 7.5e-13 77.8 150 32.7
Hma1.2p1_0903F.1_g234940 Hydrangea macrophylla HOM05D000256 ORTHO05D000119 9.9e-13 77.4 118 36.4
Hma1.2p1_1359F.1_g278080 Hydrangea macrophylla HOM05D000256 ORTHO05D000119 9.9e-13 77.4 118 36.4
COL.COLO4_05736 Corchorus olitorius HOM05D005430 ORTHO05D007814 1.7e-12 76.6 114 34.2
Cpa.g.sc12.57 Carica papaya HOM05D005430 ORTHO05D007814 2.2e-12 76.3 135 32.6
Migut.G00604 Erythranthe guttata HOM05D005430 ORTHO05D007814 2.2e-12 76.3 110 34.5
Hma1.2p1_0453F.1_g156140 Hydrangea macrophylla HOM05D000256 ORTHO05D000119 3.7e-12 75.5 141 33.3
Migut.J01121 Erythranthe guttata HOM05D000256 ORTHO05D000119 4.9e-12 75.1 122 32.8
Gohir.A09G053300 Gossypium hirsutum HOM05D005430 ORTHO05D007814 4.9e-12 75.1 150 33.3
Hma1.2p1_0146F.1_g065590 Hydrangea macrophylla HOM05D000256 ORTHO05D000119 6.4e-12 74.7 150 34.0
COL.COLO4_05734 Corchorus olitorius HOM05D005430 ORTHO05D007814 1.1e-11 73.9 125 30.4
Hma1.2p1_0170F.1_g075380 Hydrangea macrophylla HOM05D005430 ORTHO05D000119 2.4e-11 72.8 144 31.9
Hma1.2p1_1359F.1_g278050 Hydrangea macrophylla HOM05D000256 ORTHO05D000119 4.1e-11 72.0 118 34.7
PGR083G1564 Punica granatum HOM05D005430 ORTHO05D007814 7.1e-11 71.2 126 31.7
Migut.F01972 Erythranthe guttata HOM05D000256 ORTHO05D000119 9.2e-11 70.9 140 32.1
PGR044G0746 Punica granatum HOM05D000256 ORTHO05D000119 9.2e-11 70.9 114 36.0
Thecc.04G215700 Theobroma cacao HOM05D005430 ORTHO05D007814 9.2e-11 70.9 142 31.0
COL.COLO4_05733 Corchorus olitorius HOM05D005430 ORTHO05D007814 1.6e-10 70.1 128 31.2
SGA_v2.0_scaffold57G20177 Striga asiatica HOM05D005430 ORTHO05D000119 1.6e-10 70.1 146 30.1
Rhsim03G0222400 Rhododendron simsii HOM05D005430 ORTHO05D007814 4.6e-10 68.6 141 31.2
QL09p044329 Quercus lobata HOM05D000256 ORTHO05D000119 6.0e-10 68.2 101 30.7
Gohir.D05G318200 Gossypium hirsutum HOM05D005430 ORTHO05D007814 1.0e-09 67.4 112 31.2
PGR044G1572 Punica granatum HOM05D000256 ORTHO05D000119 1.0e-09 67.4 114 34.2
Gorai.009G341000 Gossypium raimondii HOM05D005430 ORTHO05D007814 1.3e-09 67.0 112 31.2
Potri.001G053300 Populus trichocarpa HOM05D005430 ORTHO05D007814 2.3e-09 66.2 111 29.7
TAR362G1185 Trochodendron aralioides HOM05D000256 ORTHO05D000119 3.9e-09 65.5 121 28.9
Hma1.2p1_2329F.1_g320010 Hydrangea macrophylla HOM05D000256 ORTHO05D000119 5.1e-09 65.1 111 36.0
Phvul.011G169288 Phaseolus vulgaris HOM05D000256 ORTHO05D000119 1.1e-08 63.9 78 41.0
SGA_v2.0_scaffold1G00733 Striga asiatica HOM05D000256 ORTHO05D000119 1.5e-08 63.5 118 33.1
COL.COLO4_05731 Corchorus olitorius HOM05D005430 ORTHO05D007814 2.5e-08 62.8 125 28.0
SalBow4G3236 Salvia bowleyana HOM05D000256 ORTHO05D000119 2.5e-08 62.8 110 29.1
Glyma.01G142000 Glycine max HOM05D000256 ORTHO05D000119 3.3e-08 62.4 125 28.8
unitig_699.g19174 Utricularia gibba HOM05D000256 ORTHO05D000119 4.3e-08 62.0 85 38.8
Ciclev10023262m.g Citrus clementina HOM05D005430 ORTHO05D007814 5.6e-08 61.6 87 29.9
SalBow2G2503 Salvia bowleyana HOM05D005430 ORTHO05D000119 5.6e-08 61.6 98 32.7
SalBow4G0962 Salvia bowleyana HOM05D000256 ORTHO05D000119 5.6e-08 61.6 110 29.1
SalBow4G1538 Salvia bowleyana HOM05D000256 ORTHO05D000119 5.6e-08 61.6 130 26.9
Gohir.A11G198542 Gossypium hirsutum HOM05D000256 ORTHO05D000119 9.5e-08 60.8 113 28.3
Potri.001G053200 Populus trichocarpa HOM05D008849 ORTHO05D010556 9.5e-08 60.8 138 29.7
Migut.N00481 Erythranthe guttata HOM05D000256 ORTHO05D000119 1.6e-07 60.1 133 28.6
Gorai.007G244400 Gossypium raimondii HOM05D000256 ORTHO05D000119 1.6e-07 60.1 113 28.3
Nitab4.5_0004762g0080 Nicotiana tabacum HOM05D000256 ORTHO05D000119 1.6e-07 60.1 109 29.4
Potri.003G201300 Populus trichocarpa HOM05D005430 ORTHO05D000119 1.6e-07 60.1 117 27.4
FAN19G2757 Fragaria x ananassa HOM05D000256 ORTHO05D000119 3.6e-07 58.9 112 33.9
Gohir.A05G316800 Gossypium hirsutum HOM05D005430 ORTHO05D007814 3.6e-07 58.9 112 28.6
SGA_v2.0_scaffold2G01339 Striga asiatica HOM05D000256 ORTHO05D000119 4.7e-07 58.5 107 29.9
CAN.G742.38 Capsicum annuum HOM05D000256 ORTHO05D000119 6.2e-07 58.2 129 28.7
COL.COLO4_05730 Corchorus olitorius HOM05D005430 ORTHO05D007814 6.2e-07 58.2 116 28.4
Lsat_1_v5_gn_8_12180 Lactuca sativa HOM05D000256 ORTHO05D000119 6.2e-07 58.2 108 32.4
Migut.N00479 Erythranthe guttata HOM05D000256 ORTHO05D000119 8.1e-07 57.8 99 33.3
Glyma.01G142100 Glycine max HOM05D000256 ORTHO05D000119 8.1e-07 57.8 142 26.8
CsaV3_6G051250 Cucumis sativus L. HOM05D000256 ORTHO05D000119 1.4e-06 57.0 84 38.1
Migut.F01928 Erythranthe guttata HOM05D000256 ORTHO05D000119 1.4e-06 57.0 113 29.2
FAN17G1524 Fragaria x ananassa HOM05D008849 ORTHO05D010556 1.4e-06 57.0 141 29.1
GSVIVG01014873001 Vitis vinifera HOM05D000256 ORTHO05D000119 1.4e-06 57.0 110 33.6
Cfa002530 Carpinus fangiana HOM05D000256 ORTHO05D000119 2.4e-06 56.2 101 31.7
Migut.F01908 Erythranthe guttata HOM05D000256 ORTHO05D000119 3.1e-06 55.8 145 29.7
Nitab4.5_0000401g0140 Nicotiana tabacum HOM05D000256 ORTHO05D000119 4.0e-06 55.5 125 30.4
RcHm_v2.0_Chr4g0396831 Rosa chinensis HOM05D008849 ORTHO05D010556 4.0e-06 55.5 136 31.6
SGA_v2.0_scaffold114G31929 Striga asiatica HOM05D000256 ORTHO05D000119 4.0e-06 55.5 99 27.3
CsaV3_2G035930 Cucumis sativus L. HOM05D000256 ORTHO05D000119 5.2e-06 55.1 111 30.6
AL5G15850 Arabidopsis lyrata HOM05D003012 ORTHO05D002833 6.8e-06 54.7 118 31.4
Migut.F01754 Erythranthe guttata HOM05D000256 ORTHO05D000119 6.8e-06 54.7 143 30.8
FvH4_4g05650 Fragaria vesca HOM05D008849 ORTHO05D010556 6.8e-06 54.7 141 28.4
Nitab4.5_0000401g0130 Nicotiana tabacum HOM05D000256 ORTHO05D000119 6.8e-06 54.7 112 30.4
PGSC0003DMG400037803 Solanum tuberosum HOM05D000256 ORTHO05D000119 6.8e-06 54.7 93 33.3
SGA_v2.0_scaffold2G01340 Striga asiatica HOM05D000256 ORTHO05D000119 6.8e-06 54.7 92 30.4
Thecc.04G213000 Theobroma cacao HOM05D008849 ORTHO05D010556 6.8e-06 54.7 108 32.4
TPR.G5085 Trifolium pratense HOM05D000256 ORTHO05D000119 8.9e-06 54.3 105 31.4


User provided reference genes

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