Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0020457 Sechium edule HOM05D006302 ORTHO05D007960 0.0e+00 2264.2 1168 100.0
ClCG01G014910 Citrullus lanatus HOM05D006302 ORTHO05D007960 0.0e+00 1987.2 1168 88.2
CsaV3_1G007420 Cucumis sativus L. HOM05D006302 ORTHO05D007960 0.0e+00 1948.3 1168 86.5
MELO3C002158.2 Cucumis melo HOM05D006302 ORTHO05D007960 0.0e+00 1846.2 1117 86.0
RcHm_v2.0_Chr7g0177661 Rosa chinensis HOM05D006302 ORTHO05D007960 0.0e+00 1390.6 1185 62.7
MD14G1242200 Malus domestica HOM05D006302 ORTHO05D007960 0.0e+00 1385.9 1173 63.6
FAN13G0246 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1380.2 1187 62.7
Prupe.5G239800 Prunus persica HOM05D006302 ORTHO05D007960 0.0e+00 1372.1 1184 63.3
FvH4_5g17940 Fragaria vesca HOM05D006302 ORTHO05D007960 0.0e+00 1368.2 1187 62.1
FAN18G4444 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1365.1 1190 61.7
CiPaw.15G150000 Carya illinoinensis HOM05D006302 ORTHO05D007960 0.0e+00 1364.0 1178 63.2
TWI81G1078 Tripterygium wilfordii HOM05D006302 ORTHO05D007960 0.0e+00 1358.6 1187 60.2
GSVIVG01012939001 Vitis vinifera HOM05D006302 ORTHO05D007960 0.0e+00 1357.4 1166 61.7
FAN04G1871 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1355.1 1176 62.6
TAR629G0371 Trochodendron aralioides HOM05D006302 ORTHO05D007960 0.0e+00 1354.3 1184 62.2
FAN08G1906 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1351.3 1185 61.7
Glyma.16G219200 Glycine max HOM05D006302 ORTHO05D007960 0.0e+00 1334.7 1166 61.9
Ca_23670_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 0.0e+00 1325.5 1175 60.0
Potri.015G033300 Populus trichocarpa HOM05D006302 ORTHO05D007960 0.0e+00 1315.8 1154 61.3
Eucgr.H00592 Eucalyptus grandis HOM05D006302 ORTHO05D007960 0.0e+00 1313.9 1176 60.4
Lalb_Chr14g0370421 Lupinus albus HOM05D006302 ORTHO05D007960 0.0e+00 1310.8 1172 59.2
TPR.G28992 Trifolium pratense HOM05D006302 ORTHO05D007960 0.0e+00 1307.4 1178 59.1
Dinv19314 Davidia involucrata HOM05D006302 ORTHO05D007960 0.0e+00 1306.2 1196 60.2
Psat1g124600 Pisum sativum HOM05D006302 ORTHO05D007960 0.0e+00 1306.2 1178 59.3
Medtr4g016590 Medicago truncatula HOM05D006302 ORTHO05D007960 0.0e+00 1298.5 1176 59.9
Gohir.D02G118900 Gossypium hirsutum HOM05D006302 ORTHO05D007960 0.0e+00 1295.0 1170 60.5
VMungo0464G0980 Vigna mungo HOM05D006302 ORTHO05D007960 0.0e+00 1294.6 1175 60.6
Thecc.03G067700 Theobroma cacao HOM05D006302 ORTHO05D007960 0.0e+00 1291.9 1188 58.7
Ciclev10018592m.g Citrus clementina HOM05D006302 ORTHO05D007960 0.0e+00 1290.4 1172 59.9
Gorai.005G134900 Gossypium raimondii HOM05D006302 ORTHO05D007960 0.0e+00 1290.0 1170 60.4
Lj2g0026336 Lotus japonicus HOM05D006302 ORTHO05D007960 0.0e+00 1288.5 1176 59.7
Sabra15G0027400 Salix brachista HOM05D006302 ORTHO05D007960 0.0e+00 1283.5 1234 56.9
Manes.06G000900 Manihot esculenta HOM05D006302 ORTHO05D007960 0.0e+00 1282.7 1190 59.7
CSS0040809 Camellia sinensis var. sinensis HOM05D006302 ORTHO05D007960 0.0e+00 1282.3 1039 63.2
Phvul.004G145200 Phaseolus vulgaris HOM05D006302 ORTHO05D007960 0.0e+00 1277.7 1180 59.6
Rhsim09G0028600 Rhododendron simsii HOM05D006302 ORTHO05D007960 0.0e+00 1277.7 1181 58.4
PGR083G1118 Punica granatum HOM05D006302 ORTHO05D007960 0.0e+00 1276.5 1167 59.0
Gohir.A03G090800 Gossypium hirsutum HOM05D006302 ORTHO05D007960 0.0e+00 1275.8 1169 59.8
Actinidia34644 Actinidia chinensis HOM05D006302 ORTHO05D007960 0.0e+00 1264.2 1185 57.9
CSS0030577 Camellia sinensis var. sinensis HOM05D006302 ORTHO05D007960 0.0e+00 1259.2 1039 62.6
Atru.chr9.205 Acer truncatum HOM05D006302 ORTHO05D007960 0.0e+00 1255.0 1172 58.9
arahy.Tifrunner.gnm1.ann1.YU9TRY Arachis hypogaea HOM05D006302 ORTHO05D007960 0.0e+00 1246.5 1215 56.3
MSTRG.23195 Avicennia marina HOM05D006302 ORTHO05D007960 0.0e+00 1240.7 1191 56.9
Haze_18958 Corylus avellana HOM05D006302 ORTHO05D007960 0.0e+00 1237.6 1357 53.6
Sopen03g028860 Solanum pennellii HOM05D006302 ORTHO05D007960 0.0e+00 1228.4 1182 57.1
Solyc03g098160.3 Solanum lycopersicum HOM05D006302 ORTHO05D007960 0.0e+00 1220.7 1182 57.1
SalBow5G5149 Salvia bowleyana HOM05D006302 ORTHO05D007960 0.0e+00 1213.7 1134 57.6
PSO063G0294 Papaver somniferum HOM05D006302 ORTHO05D007960 0.0e+00 1212.6 1174 57.2
Nitab4.5_0005200g0040 Nicotiana tabacum HOM05D006302 ORTHO05D007960 0.0e+00 1206.4 1179 56.7
Cc04_g09070 Coffea canephora HOM05D006302 ORTHO05D007960 0.0e+00 1205.3 1169 58.0
vmacro22676 Vaccinium macrocarpon HOM05D006302 ORTHO05D007960 0.0e+00 1199.5 1246 53.9
QL10p033145 Quercus lobata HOM05D006302 ORTHO05D007960 0.0e+00 1188.7 1643 45.6
CAN.G637.21 Capsicum annuum HOM05D006302 ORTHO05D007960 0.0e+00 1188.3 1194 55.6
HanXRQChr01g0002621 Helianthus annuus HOM05D006302 ORTHO05D007960 0.0e+00 1188.3 1179 54.7
DCAR_010206 Daucus carota HOM05D006302 ORTHO05D007960 0.0e+00 1187.6 1168 56.0
Nn4g24592 Nelumbo nucifera HOM05D006302 ORTHO05D007960 0.0e+00 1186.8 1086 60.4
arahy.Tifrunner.gnm1.ann1.2W4JQ8 Arachis hypogaea HOM05D006302 ORTHO05D007960 0.0e+00 1183.7 1195 55.3
THA.LOC104821822 Tarenaya hassleriana HOM05D006302 ORTHO05D007960 0.0e+00 1175.2 1168 53.9
ECA238G1211 Erigeron canadensis HOM05D006302 ORTHO05D007960 0.0e+00 1169.5 1036 57.2
Oeu060652.1 Olea europaea HOM05D006302 ORTHO05D007960 0.0e+00 1168.3 1155 55.6
Carub.0003s1747 Capsella rubella HOM05D006302 ORTHO05D007960 0.0e+00 1167.5 1152 56.2
Sp3g15860 Schrenkiella parvula HOM05D006302 ORTHO05D007960 0.0e+00 1160.6 1136 54.9
Thhalv10019937m.g Eutrema salsugineum HOM05D006302 ORTHO05D007960 0.0e+00 1156.4 1158 54.5
Peaxi162Scf00171g00631 Petunia axillaris HOM05D006302 ORTHO05D007960 0.0e+00 1155.2 1187 55.3
SGA_v2.0_scaffold90G27777 Striga asiatica HOM05D006302 ORTHO05D007960 0.0e+00 1145.6 1206 54.4
Lsat_1_v5_gn_2_15380 Lactuca sativa HOM05D006302 ORTHO05D007960 0.0e+00 1141.7 1176 53.1
Duzib084G0934 Durio zibethinus HOM05D006302 ORTHO05D007960 0.0e+00 1137.1 1148 55.1
C05p48650 Brassica napus HOM05D006302 ORTHO05D007960 0.0e+00 1135.9 1158 55.4
BolC5t33600H Brassica oleracea HOM05D006302 ORTHO05D007960 0.0e+00 1135.9 1158 55.4
Aa31LG8G4630 Aethionema arabicum HOM05D006302 ORTHO05D007960 0.0e+00 1131.3 1190 52.8
Nitab4.5_0001180g0010 Nicotiana tabacum HOM05D006302 ORTHO05D007960 0.0e+00 1131.3 1171 55.1
AL3G30880 Arabidopsis lyrata HOM05D006302 ORTHO05D007960 0.0e+00 1124.4 1168 53.9
AT3G17740 Arabidopsis thaliana HOM05D006302 ORTHO05D007960 0.0e+00 1116.3 1154 54.5
EL10Ac8g19491 Beta vulgaris HOM05D006302 ORTHO05D007960 0.0e+00 1113.2 1173 53.7
SalBow5G5312 Salvia bowleyana HOM05D006302 ORTHO05D007960 0.0e+00 1108.2 1099 55.1
Lj9C414G14 Lonicera japonica HOM05D006302 ORTHO05D007960 0.0e+00 1100.1 949 59.4
BcaC05g28760 Brassica carinata HOM05D006302 ORTHO05D007960 0.0e+00 1084.3 1146 53.8
CDE07G1110 Ceratophyllum demersum HOM05D006302 ORTHO05D007960 0.0e+00 1083.9 1183 53.6
A05p32110 Brassica napus HOM05D006302 ORTHO05D007960 0.0e+00 1075.5 1003 56.1
Zm00001eb256430 Zea mays HOM05D006302 ORTHO05D007960 1.8e-306 1056.2 1033 54.0
Migut.O00235 Erythranthe guttata HOM05D006302 ORTHO05D007960 8.7e-301 1037.3 1068 54.5
BraA05t22040Z Brassica rapa HOM05D006302 ORTHO05D007960 1.6e-299 1033.1 1175 49.7
Os02g0772500 Oryza sativa ssp. japonica HOM05D006302 ORTHO05D007960 3.4e-297 1025.4 1142 50.9
ATR0598G116 Amborella trichopoda HOM05D006302 ORTHO05D007960 3.9e-293 1011.9 1037 51.4
SHI19119 Sapria himalayana HOM05D006302 ORTHO05D007960 4.7e-278 961.8 1274 45.5
unitig_22.g5442 Utricularia gibba HOM05D006302 ORTHO05D007960 5.9e-273 944.9 1158 47.8
SEGI_33145 Sequoiadendron giganteum HOM05D006302 ORTHO05D007960 8.0e-254 881.3 1192 44.7
AUR62034018 Chenopodium quinoa HOM05D006302 ORTHO05D007960 7.5e-252 874.8 984 51.0
Sc10g0008940 Simmondsia chinensis HOM05D006302 ORTHO05D007960 7.0e-242 841.6 720 58.3
Ca_26696_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 2.3e-237 826.6 841 55.8
CARHR093080 Cardamine hirsuta HOM05D006302 ORTHO05D007960 2.6e-236 823.2 736 58.0
HPP92_002770 Vanilla planifolia HOM05D006302 ORTHO05D007960 5.6e-223 778.9 1069 44.0
Glyma.09G169600 Glycine max HOM05D006302 ORTHO05D007960 1.5e-220 770.8 633 61.9
Ca_05032_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 1.0e-208 731.5 660 58.6
Ca_22760_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 2.3e-208 730.3 661 58.4
AagrBONN_evm.TU.Sc2ySwM_362.1719 Anthoceros agrestis HOM05D006302 ORTHO05D007960 8.2e-198 695.3 1052 40.7
Mapoly0172s0015 Marchantia polymorpha HOM05D006302 ORTHO05D007960 1.1e-194 684.9 974 40.8
AT3G17712 Arabidopsis thaliana HOM05D006302 ORTHO05D007960 2.5e-194 683.7 784 52.2
SMO340G0100 Selaginella moellendorffii HOM05D006302 ORTHO05D007960 1.3e-192 677.9 1141 39.1
COL.COLO4_09239 Corchorus olitorius HOM05D006302 ORTHO05D007960 3.4e-180 636.7 665 52.8
Pp3c9_1610 Physcomitrium patens HOM05D006302 ORTHO05D007960 1.3e-179 634.8 1220 38.0
Pp3c9_1614 Physcomitrium patens HOM05D006302 ORTHO05D007960 2.4e-173 614.0 1206 37.6
Cpa.g.sc7.123 Carica papaya HOM05D006302 ORTHO05D007960 5.5e-162 576.2 489 60.9
CBR_g4862 Chara braunii HOM05D006302 ORTHO05D007960 6.8e-136 489.6 1220 30.5
C05p48600 Brassica napus HOM05D006302 ORTHO05D007960 6.2e-105 386.7 427 51.1
Sc10g0008950 Simmondsia chinensis HOM05D006302 ORTHO05D007960 9.6e-98 362.8 426 54.0
Ah.14g085900 Amaranthus hybridus HOM05D006302 ORTHO05D007960 1.8e-56 225.7 181 62.4
Lsat_1_v5_gn_0_6420 Lactuca sativa HOM05D002112 ORTHO05D007960 2.9e-54 218.4 275 41.5
Cpa.g.sc7.122 Carica papaya HOM05D006302 ORTHO05D007960 4.5e-39 167.9 115 67.8
Cre13.g589650 Chlamydomonas reinhardtii HOM05D006302 ORTHO05D007960 2.2e-25 122.5 334 28.4
Medtr6g074610 Medicago truncatula HOM05D006302 ORTHO05D007960 2.3e-14 85.9 113 44.2
Actinidia04194 Actinidia chinensis HOM05D006302 ORTHO05D007960 1.1e-13 83.6 71 56.3
Medtr6g075030 Medicago truncatula HOM05D006302 ORTHO05D007960 1.5e-13 83.2 81 53.1
CAN.G852.1 Capsicum annuum HOM05D006302 ORTHO05D007960 1.4e-11 76.6 85 48.2
Medtr6g072640 Medicago truncatula HOM05D006302 ORTHO05D007960 4.0e-11 75.1 61 60.7
Medtr6g072590 Medicago truncatula HOM05D000005 ORTHO05D000012 2.9e-09 68.9 84 42.9
COL.COLO4_09240 Corchorus olitorius HOM05D006302 ORTHO05D007960 1.4e-08 66.6 40 70.0
Cpa.g.sc7.124 Carica papaya HOM05D006302 ORTHO05D007960 1.9e-08 66.2 188 38.3
Actinidia02680 Actinidia chinensis HOM05D006302 ORTHO05D000044 1.6e-07 63.2 47 63.8
Cpa.g.c41962 Carica papaya HOM05D006302 ORTHO05D007960 3.9e-06 58.5 37 67.6
Lsat_1_v5_gn_0_32400 Lactuca sativa HOM05D002303 ORTHO05D004329 3.9e-06 58.5 97 40.2


User provided reference genes

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