Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0020412 Sechium edule HOM05D004602 ORTHO05D005906 0.0e+00 2482.6 1317 100.0
ClCG10G016070 Citrullus lanatus HOM05D004602 ORTHO05D005906 0.0e+00 2232.2 1308 88.5
MELO3C009773.2 Cucumis melo HOM05D004602 ORTHO05D005906 0.0e+00 2175.6 1321 86.5
CsaV3_3G040360 Cucumis sativus L. HOM05D004602 ORTHO05D005906 0.0e+00 2171.0 1320 87.7
Lj1A1104G73 Lonicera japonica HOM05D004602 ORTHO05D005906 0.0e+00 1854.0 1326 73.1
Manes.08G057600 Manihot esculenta HOM05D004602 ORTHO05D005906 0.0e+00 1831.2 1316 72.7
Prupe.7G042500 Prunus persica HOM05D004602 ORTHO05D005906 0.0e+00 1822.0 1320 72.0
Thecc.05G139800 Theobroma cacao HOM05D004602 ORTHO05D005906 0.0e+00 1821.2 1322 72.0
Potri.006G041500 Populus trichocarpa HOM05D004602 ORTHO05D005906 0.0e+00 1818.1 1320 71.7
RcHm_v2.0_Chr2g0125151 Rosa chinensis HOM05D004602 ORTHO05D005906 0.0e+00 1814.7 1331 71.8
CSS0013313 Camellia sinensis var. sinensis HOM05D004602 ORTHO05D005906 0.0e+00 1805.8 1327 71.1
QL07p008767 Quercus lobata HOM05D004602 ORTHO05D005906 0.0e+00 1805.0 1268 73.5
Gorai.007G353800 Gossypium raimondii HOM05D004602 ORTHO05D005906 0.0e+00 1801.2 1321 71.4
Actinidia38152 Actinidia chinensis HOM05D004602 ORTHO05D005906 0.0e+00 1800.4 1328 71.3
Gohir.A11G308300 Gossypium hirsutum HOM05D004602 ORTHO05D005906 0.0e+00 1797.7 1322 71.6
Duzib106G0250 Durio zibethinus HOM05D004602 ORTHO05D005906 0.0e+00 1797.3 1321 71.8
TWI53G0771 Tripterygium wilfordii HOM05D004602 ORTHO05D005906 0.0e+00 1794.2 1330 70.9
vmacro09030 Vaccinium macrocarpon HOM05D004602 ORTHO05D005906 0.0e+00 1793.1 1356 69.9
Sabra06G0028200 Salix brachista HOM05D004602 ORTHO05D005906 0.0e+00 1788.1 1320 70.6
FvH4_6g25220 Fragaria vesca HOM05D004602 ORTHO05D005906 0.0e+00 1787.7 1318 71.7
Ciclev10018515m.g Citrus clementina HOM05D004602 ORTHO05D005906 0.0e+00 1782.3 1325 70.6
Haze_19715 Corylus avellana HOM05D004602 ORTHO05D005906 0.0e+00 1781.5 1303 72.0
FAN14G4483 Fragaria x ananassa HOM05D004602 ORTHO05D005906 0.0e+00 1775.8 1317 71.5
MD14G1099800 Malus domestica HOM05D004602 ORTHO05D005906 0.0e+00 1772.7 1318 70.6
Eucgr.A02262 Eucalyptus grandis HOM05D004602 ORTHO05D005906 0.0e+00 1761.9 1313 70.1
Cpa.g.sc5.207 Carica papaya HOM05D004602 ORTHO05D005906 0.0e+00 1761.1 1321 69.5
TAR636G3632 Trochodendron aralioides HOM05D004602 ORTHO05D005906 0.0e+00 1757.7 1329 69.4
FAN09G3373 Fragaria x ananassa HOM05D004602 ORTHO05D005906 0.0e+00 1756.1 1320 70.6
Lalb_Chr02g0156531 Lupinus albus HOM05D004602 ORTHO05D005906 0.0e+00 1756.1 1328 70.9
CSS0046388 Camellia sinensis var. sinensis HOM05D004602 ORTHO05D005906 0.0e+00 1755.0 1307 70.4
Nn2g14888 Nelumbo nucifera HOM05D004602 ORTHO05D005906 0.0e+00 1748.0 1315 69.7
MSTRG.19816 Avicennia marina HOM05D004602 ORTHO05D005906 0.0e+00 1735.7 1329 69.5
SGA_v2.0_scaffold105G30304 Striga asiatica HOM05D004602 ORTHO05D005906 0.0e+00 1734.5 1336 68.2
Cc06_g18890 Coffea canephora HOM05D004602 ORTHO05D005906 0.0e+00 1732.6 1342 67.8
Glyma.02G157700 Glycine max HOM05D004602 ORTHO05D005906 0.0e+00 1731.5 1330 70.9
Sc19g0008270 Simmondsia chinensis HOM05D004602 ORTHO05D005906 0.0e+00 1726.8 1323 69.0
Lj5g0012838 Lotus japonicus HOM05D004602 ORTHO05D005906 0.0e+00 1726.5 1330 70.0
Peaxi162Scf01378g00118 Petunia axillaris HOM05D004602 ORTHO05D005906 0.0e+00 1721.1 1344 68.5
Sopen10g030360 Solanum pennellii HOM05D004602 ORTHO05D005906 0.0e+00 1719.1 1327 69.3
EL10Ac3g07209 Beta vulgaris HOM05D004602 ORTHO05D005906 0.0e+00 1717.2 1356 67.5
TPR.G19659 Trifolium pratense HOM05D004602 ORTHO05D005906 0.0e+00 1715.7 1329 69.4
HanXRQChr06g0176911 Helianthus annuus HOM05D004602 ORTHO05D005906 0.0e+00 1714.5 1325 69.6
DCAR_016876 Daucus carota HOM05D004602 ORTHO05D005906 0.0e+00 1713.7 1289 69.2
COL.COLO4_37951 Corchorus olitorius HOM05D004602 ORTHO05D005906 0.0e+00 1712.6 1335 68.8
THA.LOC104824412 Tarenaya hassleriana HOM05D004602 ORTHO05D005906 0.0e+00 1712.2 1314 67.8
CAN.G641.74 Capsicum annuum HOM05D004602 ORTHO05D005906 0.0e+00 1708.7 1301 69.5
PGR031G1006 Punica granatum HOM05D004602 ORTHO05D005906 0.0e+00 1703.7 1315 69.1
AT3G57060 Arabidopsis thaliana HOM05D004602 ORTHO05D005906 0.0e+00 1701.4 1307 67.8
Phvul.007G247800 Phaseolus vulgaris HOM05D004602 ORTHO05D005906 0.0e+00 1701.4 1327 69.1
Sp5g05520 Schrenkiella parvula HOM05D004602 ORTHO05D005906 0.0e+00 1698.3 1258 69.2
Ca_26637_v3 Cicer arietinum L. HOM05D004602 ORTHO05D005906 0.0e+00 1697.2 1327 69.0
A09p49980 Brassica napus HOM05D004602 ORTHO05D005906 0.0e+00 1695.6 1265 68.5
BraA09t40448Z Brassica rapa HOM05D004602 ORTHO05D005906 0.0e+00 1695.6 1265 68.5
Medtr1g051230 Medicago truncatula HOM05D004602 ORTHO05D005906 0.0e+00 1695.2 1332 68.4
Lsat_1_v5_gn_8_82681 Lactuca sativa HOM05D004602 ORTHO05D005906 0.0e+00 1694.5 1337 68.1
arahy.Tifrunner.gnm1.ann1.F5KNV4 Arachis hypogaea HOM05D004602 ORTHO05D005906 0.0e+00 1694.1 1320 68.6
BraA04t16055Z Brassica rapa HOM05D004602 ORTHO05D005906 0.0e+00 1693.3 1258 68.7
Psat6g123240 Pisum sativum HOM05D004602 ORTHO05D005906 0.0e+00 1692.6 1329 68.7
BolC4t25093H Brassica oleracea HOM05D004602 ORTHO05D005906 0.0e+00 1691.8 1258 68.7
Solyc10g079730.3 Solanum lycopersicum HOM05D004602 ORTHO05D005906 0.0e+00 1691.4 1287 69.9
BcaC02g09900 Brassica carinata HOM05D004602 ORTHO05D005906 0.0e+00 1690.2 1258 68.6
C04p35390 Brassica napus HOM05D004602 ORTHO05D005906 0.0e+00 1690.2 1258 68.6
Carub.0005s2386 Capsella rubella HOM05D004602 ORTHO05D005906 0.0e+00 1689.1 1282 67.8
PGSC0003DMG400029835 Solanum tuberosum HOM05D004602 ORTHO05D005906 0.0e+00 1689.1 1290 69.5
arahy.Tifrunner.gnm1.ann1.0AC10P Arachis hypogaea HOM05D004602 ORTHO05D005906 0.0e+00 1688.7 1320 68.5
A04p03790 Brassica napus HOM05D004602 ORTHO05D005906 0.0e+00 1688.3 1258 68.3
Migut.J01674 Erythranthe guttata HOM05D004602 ORTHO05D005906 0.0e+00 1687.9 1345 68.0
C08p32390 Brassica napus HOM05D004602 ORTHO05D005906 0.0e+00 1686.0 1279 67.8
CARHR167250 Cardamine hirsuta HOM05D004602 ORTHO05D005906 0.0e+00 1685.2 1326 66.6
Thhalv10005748m.g Eutrema salsugineum HOM05D004602 ORTHO05D005906 0.0e+00 1681.0 1314 67.0
BolC8t50853H Brassica oleracea HOM05D004602 ORTHO05D005906 0.0e+00 1678.7 1286 67.3
Hund24628 Selenicereus undatus HOM05D004602 ORTHO05D005906 0.0e+00 1677.9 1324 67.8
VMungo0720G1740 Vigna mungo HOM05D004602 ORTHO05D005906 0.0e+00 1675.2 1333 68.3
Aqoxy2G00344 Aquilegia oxysepala HOM05D004602 ORTHO05D005906 0.0e+00 1667.5 1330 66.2
PSO384G2446 Papaver somniferum HOM05D004602 ORTHO05D005906 0.0e+00 1652.5 1262 68.2
GSVIVG01033598001 Vitis vinifera HOM05D004602 ORTHO05D005906 0.0e+00 1647.5 1338 67.1
Aa31LG10G11980 Aethionema arabicum HOM05D004602 ORTHO05D005906 0.0e+00 1644.0 1279 66.8
Atru.chr1.1489 Acer truncatum HOM05D004602 ORTHO05D005906 0.0e+00 1639.8 1326 67.6
PSO339G0660 Papaver somniferum HOM05D004602 ORTHO05D005906 0.0e+00 1639.4 1261 67.5
Dinv08512 Davidia involucrata HOM05D004602 ORTHO05D005906 0.0e+00 1636.7 1148 74.9
ECA236G3238 Erigeron canadensis HOM05D004602 ORTHO05D005906 0.0e+00 1622.1 1357 65.4
Oeu029496.3 Olea europaea HOM05D004602 ORTHO05D005906 0.0e+00 1610.1 1326 67.0
Rhsim04G0110600 Rhododendron simsii HOM05D004602 ORTHO05D005906 0.0e+00 1607.4 1468 61.0
BcaC07g40050 Brassica carinata HOM05D004602 ORTHO05D005906 0.0e+00 1587.8 1359 62.3
BcaC07g40081 Brassica carinata HOM05D004602 ORTHO05D005906 0.0e+00 1583.2 1326 63.8
Nitab4.5_0001364g0050 Nicotiana tabacum HOM05D004602 ORTHO05D005906 0.0e+00 1579.7 1330 64.7
Nitab4.5_0000571g0090 Nicotiana tabacum HOM05D004602 ORTHO05D005906 0.0e+00 1577.4 1289 66.2
unitig_21.g20921 Utricularia gibba HOM05D004602 ORTHO05D005906 0.0e+00 1577.0 1321 64.8
AUR62030338 Chenopodium quinoa HOM05D004602 ORTHO05D005906 0.0e+00 1560.8 1304 64.7
Os07g0659500 Oryza sativa ssp. japonica HOM05D004602 ORTHO05D005906 0.0e+00 1547.3 1327 62.0
Gohir.D11G323700 Gossypium hirsutum HOM05D004602 ORTHO05D005906 0.0e+00 1536.2 1106 73.1
ATR0745G001 Amborella trichopoda HOM05D004602 ORTHO05D005906 0.0e+00 1528.1 1329 61.2
AL5G38540 Arabidopsis lyrata HOM05D004602 ORTHO05D005906 0.0e+00 1509.2 1175 67.4
Ah.04g151080 Amaranthus hybridus HOM05D004602 ORTHO05D005906 0.0e+00 1493.0 1164 68.3
Peaxi162Scf00970g00168 Petunia axillaris HOM05D004602 ORTHO05D005906 0.0e+00 1480.7 1298 62.2
CiPaw.09G045900 Carya illinoinensis HOM05D004602 ORTHO05D005906 0.0e+00 1463.7 1110 69.9
AUR62040826 Chenopodium quinoa HOM05D004602 ORTHO05D005906 0.0e+00 1446.4 1115 69.1
Zm00001eb329790 Zea mays HOM05D004602 ORTHO05D005906 0.0e+00 1423.7 1208 62.9
SEGI_37933 Sequoiadendron giganteum HOM05D004602 ORTHO05D005906 0.0e+00 1379.0 1355 56.2
HPP92_025012 Vanilla planifolia HOM05D004602 ORTHO05D005906 0.0e+00 1303.9 1329 55.2
SHI28280 Sapria himalayana HOM05D004602 ORTHO05D005906 0.0e+00 1296.2 1109 62.8
BcaNung07305 Brassica carinata HOM05D004602 ORTHO05D005906 0.0e+00 1211.8 1159 59.4
FAN02G3171 Fragaria x ananassa HOM05D004602 ORTHO05D005906 0.0e+00 1155.2 826 73.1
Pp3c3_32300 Physcomitrium patens HOM05D004602 ORTHO05D005906 0.0e+00 1094.0 1401 44.5
Mapoly0022s0167 Marchantia polymorpha HOM05D004602 ORTHO05D005906 1.2e-290 1003.8 1287 43.2
AagrBONN_evm.TU.Sc2ySwM_362.2771 Anthoceros agrestis HOM05D004602 ORTHO05D005906 1.6e-290 1003.4 1312 44.1
Pp3c12_12160 Physcomitrium patens HOM05D004602 ORTHO05D005906 7.8e-290 1001.1 1259 43.8
SMO351G0392 Selaginella moellendorffii HOM05D004602 ORTHO05D005906 1.7e-289 1000.0 1279 44.6
CANSAT56G2079 Cannabis sativa HOM05D004602 ORTHO05D005906 1.9e-288 996.5 761 69.1
CBR_g63081 Chara braunii HOM05D004602 ORTHO05D005906 6.5e-244 848.6 1339 40.5
CiPaw.16G087800 Carya illinoinensis HOM05D004602 ORTHO05D005906 1.4e-243 847.4 798 60.0
MBI13_g01621_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 3.0e-180 637.1 656 56.1
MCO05G584 Micromonas commoda HOM05D004602 ORTHO05D005906 8.4e-167 592.4 1305 31.9
PRCOL_00006547 Prasinoderma coloniale HOM05D004602 ORTHO05D005906 7.1e-166 589.3 1189 31.4
COL.COLO4_37953 Corchorus olitorius HOM05D004602 ORTHO05D005906 4.6e-149 533.5 531 57.6
CDE04G1839 Ceratophyllum demersum HOM05D004602 ORTHO05D005906 6.5e-119 433.3 360 65.0
FvH4_6g26040 Fragaria vesca HOM05D004602 ORTHO05D005906 3.0e-108 397.9 346 66.5
Haze_26650 Corylus avellana HOM05D004602 ORTHO05D005906 2.8e-85 321.6 1185 24.1
Cfa024947 Carpinus fangiana HOM05D004602 ORTHO05D005906 1.5e-78 299.3 1057 24.7
SalBow8G3517 Salvia bowleyana HOM05D004602 ORTHO05D005906 8.4e-66 256.9 238 60.9
SalBow8G5198 Salvia bowleyana HOM05D004602 ORTHO05D005906 8.4e-66 256.9 238 60.9
Cre10.g432500 Chlamydomonas reinhardtii HOM05D004602 ORTHO05D005906 7.1e-65 253.8 1101 25.3
SalBow8G5420 Salvia bowleyana HOM05D004602 ORTHO05D005906 2.3e-55 222.2 238 55.9
MBI15_g03986_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 7.6e-51 207.2 205 56.1
MBI08_g40283_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 1.9e-49 202.6 174 64.4
MBI08_g38609_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 7.1e-49 200.7 163 67.5
MBI13_g41158_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 2.7e-48 198.7 213 53.5
MBI13_g41314_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 7.9e-48 197.2 213 52.6
Lalb_Chr06g0173621 Lupinus albus HOM05D004602 ORTHO05D005906 1.3e-45 189.9 175 59.4
SHI28279 Sapria himalayana HOM05D004602 ORTHO05D005906 4.8e-45 188.0 161 60.2
SEGI_14640 Sequoiadendron giganteum HOM05D004602 ORTHO05D005906 1.8e-44 186.0 224 46.4
MBI06_g41970_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 4.0e-44 184.9 178 56.2
MBI08_g39158_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 1.8e-39 169.5 136 67.6
Hma1.2p1_0682F.1_g202500 Hydrangea macrophylla HOM05D004602 ORTHO05D005906 1.2e-35 156.8 119 67.2
CDE04G0055 Ceratophyllum demersum HOM05D004602 ORTHO05D005906 4.5e-35 154.8 155 55.5
Psat5g030400 Pisum sativum HOM05D001137 ORTHO05D006400 2.2e-29 136.0 85 82.4
MBI05_g18177_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 6.5e-26 124.4 99 69.7
Lalb_Chr06g0173601 Lupinus albus HOM05D004602 ORTHO05D014120 2.5e-25 122.5 97 67.0
MBI11_g15185_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 1.2e-24 120.2 97 69.1
MBI15_g38850_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 1.2e-24 120.2 143 53.8
MBI05_g39343_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 7.9e-24 117.5 78 78.2
MBI13_g46003_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 3.3e-22 112.1 119 51.3
FAN05G3456 Fragaria x ananassa HOM05D004602 ORTHO05D014120 6.3e-21 107.8 132 56.1
HanXRQChr05g0161121 Helianthus annuus HOM05D004602 ORTHO05D005906 1.1e-20 107.1 91 65.9
Psat7g124520 Pisum sativum HOM05D004602 ORTHO05D030491 1.2e-19 103.6 77 71.4
Psat7g124600 Pisum sativum HOM05D004602 ORTHO05D030491 1.2e-19 103.6 77 71.4
MBI08_g05534_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 3.8e-18 98.6 64 78.1
MBI16_g48278_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 3.2e-17 95.5 69 66.7
PGSC0003DMG400020858 Solanum tuberosum HOM05D004602 ORTHO05D005906 1.2e-16 93.6 97 50.5
Rhsim06G0100000 Rhododendron simsii HOM05D004602 ORTHO05D005906 1.4e-15 90.1 96 51.0
MELO3C029978.2 Cucumis melo HOM05D004602 ORTHO05D000002 2.6e-14 85.9 65 70.8
MELO3C008538.2 Cucumis melo HOM05D004602 ORTHO05D005906 3.3e-14 85.5 41 95.1
Rhsim04G0123400 Rhododendron simsii HOM05D007559 ORTHO05D009642 6.3e-13 81.3 62 62.9
PGSC0003DMG400020862 Solanum tuberosum HOM05D004602 ORTHO05D005906 6.3e-13 81.3 97 45.4
PGSC0003DMG400004177 Solanum tuberosum HOM05D002370 ORTHO05D003878 7.7e-11 74.3 65 63.1
Lalb_Chr06g0173611 Lupinus albus HOM05D004602 ORTHO05D005906 3.2e-09 68.9 57 63.2
COL.COLO4_34262 Corchorus olitorius HOM05D004602 ORTHO05D014120 2.7e-08 65.9 82 52.4


User provided reference genes

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