Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0009296 Sechium edule HOM05D000388 ORTHO05D009843 6.4e-51 203.8 101 100.0
Sed0020360 Sechium edule HOM05D000388 ORTHO05D009843 6.4e-51 203.8 101 100.0
RcHm_v2.0_CPg0502271 Rosa chinensis HOM05D000388 ORTHO05D009843 1.0e-48 196.4 101 96.0
Potri.013G142336 Populus trichocarpa HOM05D000388 ORTHO05D009843 3.9e-48 194.5 101 95.0
RcHm_v2.0_Chr3g0491801 Rosa chinensis HOM05D000388 ORTHO05D009843 3.9e-48 194.5 101 94.1
Migut.D01348 Erythranthe guttata HOM05D000388 ORTHO05D009843 8.7e-48 193.4 101 94.1
Migut.J01359 Erythranthe guttata HOM05D000388 ORTHO05D009843 8.7e-48 193.4 101 94.1
Hma1.2p1_0051F.1_g029490 Hydrangea macrophylla HOM05D000388 ORTHO05D009843 1.9e-47 192.2 101 94.1
BcaC04g20699 Brassica carinata HOM05D000388 ORTHO05D009843 4.3e-47 191.0 101 92.1
BNapus_Darmor_BZH_scaffold_253p00110 Brassica napus HOM05D000388 ORTHO05D009843 7.4e-47 190.3 101 92.1
BNapus_Darmor_BZH_scaffold_287p00030 Brassica napus HOM05D000388 ORTHO05D000473 7.4e-47 190.3 101 92.1
C09p40130 Brassica napus HOM05D000388 ORTHO05D009843 7.4e-47 190.3 101 92.1
BolC7t41727H Brassica oleracea HOM05D000388 ORTHO05D000473 7.4e-47 190.3 101 92.1
BolSC29t60455H Brassica oleracea HOM05D000388 ORTHO05D000473 7.4e-47 190.3 101 92.1
BolSC45t60943H Brassica oleracea HOM05D000388 ORTHO05D000473 7.4e-47 190.3 101 92.1
BolSC46t60990H Brassica oleracea HOM05D000388 ORTHO05D000473 7.4e-47 190.3 101 92.1
BraSC140t45581Z Brassica rapa HOM05D000388 ORTHO05D000473 7.4e-47 190.3 101 92.1
BraSC151t45706Z Brassica rapa HOM05D000388 ORTHO05D009843 7.4e-47 190.3 101 92.1
BraSC179t45796Z Brassica rapa HOM05D000388 ORTHO05D000473 7.4e-47 190.3 101 92.1
Gohir.D08G129080 Gossypium hirsutum HOM05D000388 ORTHO05D009843 7.4e-47 190.3 101 93.1
CAN.G142.10 Capsicum annuum HOM05D000388 ORTHO05D009843 1.3e-46 189.5 101 93.1
CAN.G500.81 Capsicum annuum HOM05D000388 ORTHO05D009843 1.3e-46 189.5 101 93.1
CAN.G653.5 Capsicum annuum HOM05D000388 ORTHO05D009843 1.3e-46 189.5 101 93.1
CARHR281990 Cardamine hirsuta HOM05D000388 ORTHO05D009843 1.3e-46 189.5 101 91.1
Lalb_Chr23g0270511 Lupinus albus HOM05D000388 ORTHO05D009843 1.3e-46 189.5 101 93.1
Nn020s41509 Nelumbo nucifera HOM05D000388 ORTHO05D009843 1.3e-46 189.5 101 93.1
Nn055s41931 Nelumbo nucifera HOM05D000388 ORTHO05D009843 1.3e-46 189.5 101 93.1
Nn082s42681 Nelumbo nucifera HOM05D000388 ORTHO05D009843 1.3e-46 189.5 101 93.1
Nn287s46145 Nelumbo nucifera HOM05D000388 ORTHO05D009843 1.3e-46 189.5 101 93.1
PGR111G0009 Punica granatum HOM05D000388 ORTHO05D009843 2.1e-46 188.7 101 93.1
HanXRQChr00c0272g0573001 Helianthus annuus HOM05D000388 ORTHO05D009843 2.8e-46 188.3 101 92.1
HanXRQChr00c0439g0574751 Helianthus annuus HOM05D000388 ORTHO05D009843 2.8e-46 188.3 101 92.1
HanXRQChr02g0041691 Helianthus annuus HOM05D000388 ORTHO05D009843 2.8e-46 188.3 101 92.1
HanXRQChr04g0099341 Helianthus annuus HOM05D000388 ORTHO05D009843 2.8e-46 188.3 101 92.1
HanXRQChr05g0151391 Helianthus annuus HOM05D000388 ORTHO05D009843 2.8e-46 188.3 101 92.1
HanXRQChr07g0201051 Helianthus annuus HOM05D000388 ORTHO05D009843 2.8e-46 188.3 101 92.1
HanXRQChr08g0210251 Helianthus annuus HOM05D000388 ORTHO05D009843 2.8e-46 188.3 101 92.1
HanXRQChr10g0282451 Helianthus annuus HOM05D000388 ORTHO05D009843 2.8e-46 188.3 101 92.1
HanXRQChr11g0326691 Helianthus annuus HOM05D000388 ORTHO05D009843 2.8e-46 188.3 101 92.1
HanXRQCPg0579911 Helianthus annuus HOM05D000388 ORTHO05D009843 2.8e-46 188.3 101 92.1
AL2G20790 Arabidopsis lyrata HOM05D000388 ORTHO05D009843 3.7e-46 188.0 101 91.1
ATCG00330 Arabidopsis thaliana HOM05D000388 ORTHO05D009843 3.7e-46 188.0 101 91.1
LjContig00318g0006350 Lotus japonicus HOM05D000388 ORTHO05D009843 4.8e-46 187.6 101 92.1
PSO548G0009 Papaver somniferum HOM05D000388 ORTHO05D009843 8.1e-46 186.8 101 91.1
Solyc00g500055.1 Solanum lycopersicum HOM05D000388 ORTHO05D009843 1.4e-45 186.0 99 93.9
Solyc00g500137.1 Solanum lycopersicum HOM05D000388 ORTHO05D009843 1.4e-45 186.0 99 93.9
Solyc00g500207.1 Solanum lycopersicum HOM05D000388 ORTHO05D009843 1.4e-45 186.0 99 93.9
Gohir.A03G019500 Gossypium hirsutum HOM05D000388 ORTHO05D009843 9.0e-45 183.3 101 90.1
Thhalv10011029m.g Eutrema salsugineum HOM05D000388 ORTHO05D009843 1.5e-44 182.6 101 90.1
Gohir.A05G086166 Gossypium hirsutum HOM05D000388 ORTHO05D009843 1.7e-43 179.1 101 89.1
Sed0021792 Sechium edule HOM05D000388 ORTHO05D009843 1.7e-43 179.1 101 89.1
DCAR_032482 Daucus carota HOM05D000388 ORTHO05D009843 2.9e-43 178.3 101 88.1
A06p23300 Brassica napus HOM05D000388 ORTHO05D000473 4.9e-43 177.6 97 88.7
CAN.G679.7 Capsicum annuum HOM05D000388 ORTHO05D009843 4.9e-43 177.6 101 88.1
arahy.Tifrunner.gnm1.ann1.6B1C4L Arachis hypogaea HOM05D000388 ORTHO05D009843 1.1e-42 176.4 98 89.8
AL2G21360 Arabidopsis lyrata HOM05D000388 ORTHO05D009843 1.4e-42 176.0 99 87.9
TWI15G0535 Tripterygium wilfordii HOM05D000388 ORTHO05D009843 4.2e-42 174.5 101 86.1
Gohir.A01G140300 Gossypium hirsutum HOM05D000388 ORTHO05D009843 9.3e-42 173.3 101 85.1
BolC9t56909H Brassica oleracea HOM05D000388 ORTHO05D009843 4.6e-41 171.0 94 89.4
CiPaw.10G111400 Carya illinoinensis HOM05D000388 ORTHO05D009843 4.6e-41 171.0 88 93.2
Medtr3g035610 Medicago truncatula HOM05D000388 ORTHO05D009843 7.9e-41 170.2 101 86.1
EL10Ac1g02280 Beta vulgaris HOM05D000388 ORTHO05D009843 1.3e-40 169.5 101 87.1
Gohir.D09G055500 Gossypium hirsutum HOM05D000388 ORTHO05D009843 2.3e-40 168.7 101 83.2
Gohir.A01G164720 Gossypium hirsutum HOM05D000388 ORTHO05D009843 8.7e-40 166.8 100 86.0
TAR629G1277 Trochodendron aralioides HOM05D000388 ORTHO05D009843 8.7e-40 166.8 86 96.5
LjContig00489g0027265 Lotus japonicus HOM05D000388 ORTHO05D009843 3.3e-39 164.9 101 81.2
Nitab4.5_0025922g0010 Nicotiana tabacum HOM05D000388 ORTHO05D009843 2.1e-38 162.2 86 94.2
Oeu062844.1 Olea europaea HOM05D000388 ORTHO05D009843 1.4e-37 159.5 99 80.8
Oeu017222.1 Olea europaea HOM05D000388 ORTHO05D009843 1.8e-37 159.1 101 80.2
Nitab4.5_0007186g0040 Nicotiana tabacum HOM05D000388 ORTHO05D009843 3.1e-37 158.3 86 91.9
SEGI_01256 Sequoiadendron giganteum HOM05D000388 ORTHO05D009843 1.5e-36 156.0 101 77.2
Eucgr.C02020 Eucalyptus grandis HOM05D000388 ORTHO05D009843 1.4e-34 149.4 93 81.7
CAN.G386.18 Capsicum annuum HOM05D000388 ORTHO05D000473 1.6e-33 146.0 75 90.7
Peaxi162Scf00575g00006 Petunia axillaris HOM05D000388 ORTHO05D009843 1.6e-33 146.0 70 95.7
BolSC44t60854H Brassica oleracea HOM05D000388 ORTHO05D009843 2.7e-33 145.2 94 75.5
CSS0013534 Camellia sinensis var. sinensis HOM05D000388 ORTHO05D009843 1.1e-31 139.8 79 89.9
Hund28396 Selenicereus undatus HOM05D000388 ORTHO05D009843 1.5e-31 139.4 74 90.5
Peaxi162Scf00455g00046 Petunia axillaris HOM05D000388 ORTHO05D009843 1.3e-30 136.3 76 89.5
arahy.Tifrunner.gnm1.ann1.FC7Y3W Arachis hypogaea HOM05D000388 ORTHO05D009843 4.8e-30 134.4 97 72.2
SMO086G0040 Selaginella moellendorffii HOM05D000388 ORTHO05D009843 2.4e-29 132.1 99 64.6
Gohir.A07G155821 Gossypium hirsutum HOM05D000388 ORTHO05D009843 2.5e-26 122.1 72 86.1
HanXRQChr00c0345g0573851 Helianthus annuus HOM05D000388 ORTHO05D009843 7.2e-26 120.6 56 98.2
EL10As15g24141 Beta vulgaris HOM05D000388 ORTHO05D009843 5.7e-23 110.9 65 89.2
Nitab4.5_0002607g0050 Nicotiana tabacum HOM05D000388 ORTHO05D009843 1.8e-21 105.9 66 86.4
EL10As28g24250 Beta vulgaris HOM05D000388 ORTHO05D000473 5.3e-21 104.4 56 87.5
Phvul.010G068900 Phaseolus vulgaris HOM05D000388 ORTHO05D009843 3.8e-19 98.2 48 91.7
CsaV3_6G032160 Cucumis sativus L. HOM05D000388 ORTHO05D009843 6.5e-19 97.4 91 63.7
HanXRQChr16g0506261 Helianthus annuus HOM05D000388 ORTHO05D009843 5.5e-18 94.4 57 86.0
Medtr5g063380 Medicago truncatula HOM05D000388 ORTHO05D009843 1.0e-16 90.1 48 87.5
arahy.Tifrunner.gnm1.ann1.A3NG1I Arachis hypogaea HOM05D000388 ORTHO05D009843 1.3e-14 83.2 53 75.5
Medtr8g079770 Medicago truncatula HOM05D000388 ORTHO05D009843 3.1e-13 78.6 51 82.4
Hund29903 Selenicereus undatus HOM05D000388 ORTHO05D009843 1.6e-12 76.3 51 82.4
arahy.Tifrunner.gnm1.ann1.90KAHV Arachis hypogaea HOM05D000388 ORTHO05D009843 7.7e-12 73.9 97 50.5
Sopen10g013070 Solanum pennellii HOM05D000388 ORTHO05D009843 1.7e-11 72.8 36 86.1
EL10Ac3g05283 Beta vulgaris HOM05D007099 ORTHO05D009081 8.0e-09 63.9 92 45.7
arahy.Tifrunner.gnm1.ann1.EPB7VR Arachis hypogaea HOM05D000176 ORTHO05D000106 5.2e-08 61.2 27 96.3
Hund03588 Selenicereus undatus HOM05D007099 ORTHO05D009081 6.7e-08 60.8 92 44.6
Hund07474 Selenicereus undatus HOM05D007099 ORTHO05D009081 6.7e-08 60.8 92 44.6
CsaV3_2G032930 Cucumis sativus L. HOM05D007099 ORTHO05D009081 8.8e-08 60.5 91 41.8
BolC9t56932H Brassica oleracea HOM05D000388 ORTHO05D009843 1.1e-07 60.1 27 96.3
Sed0026927 Sechium edule HOM05D007099 ORTHO05D009081 1.1e-07 60.1 91 41.8
MELO3C019879.2 Cucumis melo HOM05D007099 ORTHO05D009081 2.0e-07 59.3 91 40.7
AUR62006089 Chenopodium quinoa HOM05D007099 ORTHO05D009081 2.6e-07 58.9 91 42.9
AUR62019404 Chenopodium quinoa HOM05D007099 ORTHO05D009081 2.6e-07 58.9 91 42.9
HanXRQChr00c0586g0576301 Helianthus annuus HOM05D000388 ORTHO05D009843 3.3e-07 58.5 83 49.4
Potri.001G424950 Populus trichocarpa HOM05D007099 ORTHO05D009081 3.3e-07 58.5 95 40.0
CAN.G371.64 Capsicum annuum HOM05D007099 ORTHO05D009081 5.7e-07 57.8 95 42.1
ClCG08G008070 Citrullus lanatus HOM05D007099 ORTHO05D009081 7.5e-07 57.4 91 41.8
Solyc04g079380.1 Solanum lycopersicum HOM05D007099 ORTHO05D009081 7.5e-07 57.4 95 42.1
Sopen04g032990 Solanum pennellii HOM05D007099 ORTHO05D009081 7.5e-07 57.4 95 42.1
PGSC0003DMG400007997 Solanum tuberosum HOM05D007099 ORTHO05D009081 7.5e-07 57.4 95 42.1
MD07G1070600 Malus domestica HOM05D007099 ORTHO05D009081 9.7e-07 57.0 95 40.0
Aqoxy12s037 Aquilegia oxysepala HOM05D007099 ORTHO05D009081 1.3e-06 56.6 95 44.2
MD07G1069700 Malus domestica HOM05D007099 ORTHO05D009081 1.3e-06 56.6 94 39.4
Manes.15G073400 Manihot esculenta HOM05D007099 ORTHO05D009081 1.3e-06 56.6 90 40.0
Nitab4.5_0000068g0330 Nicotiana tabacum HOM05D007099 ORTHO05D009081 1.3e-06 56.6 94 41.5
Nitab4.5_0012613g0010 Nicotiana tabacum HOM05D007099 ORTHO05D009081 1.3e-06 56.6 94 41.5
Prupe.2G087000 Prunus persica HOM05D007099 ORTHO05D009081 1.7e-06 56.2 95 40.0
Prupe.2G087700 Prunus persica HOM05D007099 ORTHO05D009081 1.7e-06 56.2 95 40.0
Prupe.8G094900 Prunus persica HOM05D007099 ORTHO05D009081 1.7e-06 56.2 95 40.0
Sabra16G0287600 Salix brachista HOM05D007099 ORTHO05D009081 1.7e-06 56.2 95 38.9
Cc11_g04750 Coffea canephora HOM05D007099 ORTHO05D009081 2.8e-06 55.5 103 36.9
FvH4_7g06080 Fragaria vesca HOM05D007099 ORTHO05D009081 2.8e-06 55.5 103 36.9
MD03G1252400 Malus domestica HOM05D007099 ORTHO05D009081 2.8e-06 55.5 95 38.9
SalBow8G2603 Salvia bowleyana HOM05D007099 ORTHO05D009081 2.8e-06 55.5 94 36.2
Zm00001eb261270 Zea mays HOM05D002252 ORTHO05D002451 2.8e-06 55.5 95 37.9
CANSAT56G2898 Cannabis sativa HOM05D007099 ORTHO05D009081 4.8e-06 54.7 95 38.9
Mapoly0991s0001 Marchantia polymorpha HOM05D007099 ORTHO05D009081 4.8e-06 54.7 62 41.9
Atru.chr1.3070 Acer truncatum HOM05D007099 ORTHO05D009081 6.3e-06 54.3 95 36.8
Atru.chr3.1047 Acer truncatum HOM05D007099 ORTHO05D009081 6.3e-06 54.3 95 36.8
Ah.07g205590 Amaranthus hybridus HOM05D007099 ORTHO05D009081 6.3e-06 54.3 91 42.9
FAN06G3861 Fragaria x ananassa HOM05D007099 ORTHO05D009081 6.3e-06 54.3 102 36.3
FAN10G1031 Fragaria x ananassa HOM05D007099 ORTHO05D009081 6.3e-06 54.3 102 36.3
RcHm_v2.0_Chr5g0056441 Rosa chinensis HOM05D007099 ORTHO05D009081 8.2e-06 53.9 103 35.9


User provided reference genes

Program Settings