Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0020358 Sechium edule HOM05D004037 ORTHO05D004744 1.0e-182 643.3 333 100.0
ClCG09G010780 Citrullus lanatus HOM05D004037 ORTHO05D004744 9.2e-163 577.0 334 91.6
MELO3C013171.2 Cucumis melo HOM05D004037 ORTHO05D004744 7.3e-160 567.4 334 89.8
CsaV3_7G021780 Cucumis sativus L. HOM05D004037 ORTHO05D004744 2.1e-159 565.8 334 89.8
Sed0007542 Sechium edule HOM05D004037 ORTHO05D004744 2.0e-157 559.3 334 88.0
QL10p064641 Quercus lobata HOM05D004037 ORTHO05D004744 1.1e-139 500.4 338 77.2
QL10p065764 Quercus lobata HOM05D004037 ORTHO05D004744 4.2e-139 498.4 338 76.9
CiPaw.01G202600 Carya illinoinensis HOM05D004037 ORTHO05D004744 6.0e-138 494.6 326 77.3
Thecc.05G172500 Theobroma cacao HOM05D004037 ORTHO05D004744 8.1e-135 484.2 341 74.2
COL.COLO4_19183 Corchorus olitorius HOM05D004037 ORTHO05D004744 1.4e-134 483.4 303 79.9
THA.LOC104804380 Tarenaya hassleriana HOM05D004037 ORTHO05D004744 4.0e-134 481.9 297 81.5
Aa31LG10G14130 Aethionema arabicum HOM05D004037 ORTHO05D004744 5.3e-134 481.5 306 78.8
AL5G42050 Arabidopsis lyrata HOM05D004037 ORTHO05D004744 1.5e-133 479.9 331 74.6
AT3G59890 Arabidopsis thaliana HOM05D004037 ORTHO05D004744 1.5e-133 479.9 330 74.5
PGR042G3458 Punica granatum HOM05D004037 ORTHO05D004744 1.5e-133 479.9 325 77.5
Manes.05G207900 Manihot esculenta HOM05D004037 ORTHO05D004744 2.0e-133 479.6 302 80.5
Atru.chr12.1746 Acer truncatum HOM05D004037 ORTHO05D004744 5.8e-133 478.0 288 82.6
MD15G1142500 Malus domestica HOM05D004037 ORTHO05D004744 7.6e-133 477.6 302 79.8
TWI63G1426 Tripterygium wilfordii HOM05D004037 ORTHO05D004744 7.6e-133 477.6 297 80.5
CANSAT01G0494 Cannabis sativa HOM05D004037 ORTHO05D004744 9.9e-133 477.2 294 82.7
Gorai.001G202100 Gossypium raimondii HOM05D004037 ORTHO05D004744 1.7e-132 476.5 297 80.1
Duzib093G0613 Durio zibethinus HOM05D004037 ORTHO05D004744 2.2e-132 476.1 297 78.5
Gohir.D07G181200 Gossypium hirsutum HOM05D004037 ORTHO05D004744 2.2e-132 476.1 297 80.1
Thhalv10006083m.g Eutrema salsugineum HOM05D004037 ORTHO05D004744 3.8e-132 475.3 296 80.1
CARHR170220 Cardamine hirsuta HOM05D004037 ORTHO05D004744 8.4e-132 474.2 276 84.1
Thecc.01G117800 Theobroma cacao HOM05D004037 ORTHO05D004744 8.4e-132 474.2 341 73.6
Prupe.6G152500 Prunus persica HOM05D004037 ORTHO05D004744 1.4e-131 473.4 312 75.6
BcaC01g05190 Brassica carinata HOM05D004037 ORTHO05D004744 1.9e-131 473.0 287 82.2
C03p29380 Brassica napus HOM05D004037 ORTHO05D004744 1.9e-131 473.0 287 81.9
CARHR139200 Cardamine hirsuta HOM05D004037 ORTHO05D004744 3.2e-131 472.2 295 80.0
Gorai.007G347100 Gossypium raimondii HOM05D004037 ORTHO05D004744 3.2e-131 472.2 297 78.8
BolC3t15285H Brassica oleracea HOM05D004037 ORTHO05D004744 4.2e-131 471.9 314 76.4
Carub.0005s2663 Capsella rubella HOM05D004037 ORTHO05D004744 4.2e-131 471.9 313 76.4
Gohir.A07G173900 Gossypium hirsutum HOM05D004037 ORTHO05D004744 4.2e-131 471.9 297 79.1
AT2G44040 Arabidopsis thaliana HOM05D004037 ORTHO05D004744 5.5e-131 471.5 306 78.1
Prupe.7G270700 Prunus persica HOM05D004037 ORTHO05D004744 7.1e-131 471.1 289 81.0
A03p24640 Brassica napus HOM05D004037 ORTHO05D004744 9.3e-131 470.7 299 79.9
BraA03t11670Z Brassica rapa HOM05D004037 ORTHO05D004744 9.3e-131 470.7 299 79.9
Carub.0004s2659 Capsella rubella HOM05D004037 ORTHO05D004744 1.2e-130 470.3 297 79.1
Gohir.A11G301700 Gossypium hirsutum HOM05D004037 ORTHO05D004744 1.2e-130 470.3 283 81.6
Hma1.2p1_0150F.1_g066850 Hydrangea macrophylla HOM05D004037 ORTHO05D004744 1.2e-130 470.3 304 77.6
RcHm_v2.0_Chr2g0084421 Rosa chinensis HOM05D004037 ORTHO05D004744 1.6e-130 469.9 302 77.8
Sp4g26120 Schrenkiella parvula HOM05D004037 ORTHO05D004744 1.6e-130 469.9 329 73.6
AL4G42910 Arabidopsis lyrata HOM05D004037 ORTHO05D004744 2.7e-130 469.2 295 79.0
Glyma.16G028900 Glycine max HOM05D004037 ORTHO05D004744 2.7e-130 469.2 300 80.3
Medtr8g028145 Medicago truncatula HOM05D004037 ORTHO05D004744 2.7e-130 469.2 299 80.6
Glyma.07G060300 Glycine max HOM05D004037 ORTHO05D004744 3.5e-130 468.8 300 80.7
Phvul.001G003100 Phaseolus vulgaris HOM05D004037 ORTHO05D004744 3.5e-130 468.8 287 82.6
VMungo1383G1316 Vigna mungo HOM05D004037 ORTHO05D004744 3.5e-130 468.8 340 72.9
Aa31LG1G25710 Aethionema arabicum HOM05D004037 ORTHO05D004744 4.6e-130 468.4 300 78.3
Haze_11114 Corylus avellana HOM05D004037 ORTHO05D004744 6.0e-130 468.0 319 77.4
TWI34G0723 Tripterygium wilfordii HOM05D004037 ORTHO05D004744 6.0e-130 468.0 300 78.7
FvH4_2g00280 Fragaria vesca HOM05D004037 ORTHO05D004744 7.9e-130 467.6 308 76.6
FAN19G0379 Fragaria x ananassa HOM05D004037 ORTHO05D004744 7.9e-130 467.6 313 76.4
Ciclev10020914m.g Citrus clementina HOM05D004037 ORTHO05D004744 1.0e-129 467.2 298 79.5
TAR636G3090 Trochodendron aralioides HOM05D004037 ORTHO05D004744 1.0e-129 467.2 299 78.6
Thhalv10001534m.g Eutrema salsugineum HOM05D004037 ORTHO05D004744 1.3e-129 466.8 297 77.8
Ca_23565_v3 Cicer arietinum L. HOM05D004037 ORTHO05D004744 5.1e-129 464.9 298 79.5
Duzib128G0968 Durio zibethinus HOM05D004037 ORTHO05D004744 6.7e-129 464.5 302 77.2
Ah.04g165670 Amaranthus hybridus HOM05D004037 ORTHO05D004744 1.1e-128 463.8 303 76.2
Ah.06g182910 Amaranthus hybridus HOM05D004037 ORTHO05D004744 1.1e-128 463.8 331 72.8
BcaB01g03335 Brassica carinata HOM05D004037 ORTHO05D004744 1.1e-128 463.8 297 77.4
TPR.G5068 Trifolium pratense HOM05D004037 ORTHO05D004744 1.1e-128 463.8 299 79.3
AUR62016240 Chenopodium quinoa HOM05D004037 ORTHO05D004744 1.5e-128 463.4 303 77.2
GSVIVG01038260001 Vitis vinifera HOM05D004037 ORTHO05D004744 1.5e-128 463.4 304 78.3
Gohir.D11G316700 Gossypium hirsutum HOM05D004037 ORTHO05D004744 1.9e-128 463.0 292 78.8
A04p33160 Brassica napus HOM05D004037 ORTHO05D004744 2.5e-128 462.6 287 79.4
BolC4t28586H Brassica oleracea HOM05D004037 ORTHO05D004744 2.5e-128 462.6 287 78.7
FAN24G1991 Fragaria x ananassa HOM05D004037 ORTHO05D004744 2.5e-128 462.6 278 82.7
BraA04t18775Z Brassica rapa HOM05D004037 ORTHO05D004744 5.6e-128 461.5 286 78.7
Phvul.010G108900 Phaseolus vulgaris HOM05D004037 ORTHO05D004744 7.4e-128 461.1 299 80.6
Hund23277 Selenicereus undatus HOM05D004037 ORTHO05D004744 9.6e-128 460.7 309 75.4
Sc06g0007930 Simmondsia chinensis HOM05D004037 ORTHO05D004744 9.6e-128 460.7 318 73.6
C04p70860 Brassica napus HOM05D004037 ORTHO05D004744 1.3e-127 460.3 287 78.4
PGSC0003DMG400028592 Solanum tuberosum HOM05D004037 ORTHO05D004744 1.3e-127 460.3 293 77.8
Psat4g089800 Pisum sativum HOM05D004037 ORTHO05D004744 1.6e-127 459.9 298 79.9
RcHm_v2.0_Chr2g0126841 Rosa chinensis HOM05D004037 ORTHO05D004744 1.6e-127 459.9 309 74.8
Lj3g0014190 Lotus japonicus HOM05D004037 ORTHO05D004744 2.1e-127 459.5 300 78.3
arahy.Tifrunner.gnm1.ann1.FPGW6Q Arachis hypogaea HOM05D004037 ORTHO05D004744 3.7e-127 458.8 304 78.9
BcaB06g29352 Brassica carinata HOM05D004037 ORTHO05D004744 3.7e-127 458.8 282 80.9
EL10Ac2g02395 Beta vulgaris HOM05D004037 ORTHO05D004744 6.2e-127 458.0 303 75.6
Nn3g17600 Nelumbo nucifera HOM05D004037 ORTHO05D004744 1.1e-126 457.2 317 73.5
AUR62032781 Chenopodium quinoa HOM05D004037 ORTHO05D004744 1.4e-126 456.8 301 76.4
Solyc01g098380.4 Solanum lycopersicum HOM05D004037 ORTHO05D004744 1.4e-126 456.8 293 77.1
Actinidia39245 Actinidia chinensis HOM05D004037 ORTHO05D004744 2.4e-126 456.1 304 75.0
arahy.Tifrunner.gnm1.ann1.X3ZCQR Arachis hypogaea HOM05D004037 ORTHO05D004744 2.4e-126 456.1 304 78.6
Gohir.D11G317300 Gossypium hirsutum HOM05D004037 ORTHO05D004744 4.0e-126 455.3 290 78.3
Aqoxy2G03110 Aquilegia oxysepala HOM05D004037 ORTHO05D004744 5.3e-126 454.9 290 77.9
Lju470A2T32 Lonicera japonica HOM05D004037 ORTHO05D004744 5.3e-126 454.9 306 77.1
CAN.G134.227 Capsicum annuum HOM05D004037 ORTHO05D004744 6.9e-126 454.5 305 75.4
vmacro05805 Vaccinium macrocarpon HOM05D004037 ORTHO05D004744 1.5e-125 453.4 272 82.0
Cc03_g11000 Coffea canephora HOM05D004037 ORTHO05D004744 2.0e-125 453.0 327 72.2
Nitab4.5_0000245g0260 Nicotiana tabacum HOM05D004037 ORTHO05D004744 4.5e-125 451.8 303 75.9
Migut.M01184 Erythranthe guttata HOM05D004037 ORTHO05D004744 2.2e-124 449.5 299 76.3
Lalb_Chr10g0100171 Lupinus albus HOM05D004037 ORTHO05D004744 2.9e-124 449.1 296 76.7
Actinidia14627 Actinidia chinensis HOM05D004037 ORTHO05D004744 4.9e-124 448.4 302 74.5
HanXRQChr02g0032821 Helianthus annuus HOM05D004037 ORTHO05D004744 4.9e-124 448.4 304 75.3
Hund02101 Selenicereus undatus HOM05D004037 ORTHO05D004744 6.5e-124 448.0 303 74.3
Migut.M00539 Erythranthe guttata HOM05D004037 ORTHO05D004744 7.1e-123 444.5 333 70.3
EL10Ac6g13735 Beta vulgaris HOM05D004037 ORTHO05D004744 9.3e-123 444.1 306 73.2
Lsat_1_v5_gn_3_17660 Lactuca sativa HOM05D004037 ORTHO05D004744 9.3e-123 444.1 308 73.4
Potri.017G001900 Populus trichocarpa HOM05D004037 ORTHO05D004744 9.3e-123 444.1 274 80.3
MBI18_g24142_MAGBIO Magnolia biondii HOM05D004037 ORTHO05D004744 3.5e-122 442.2 285 76.5
ECA246G0926 Erigeron canadensis HOM05D004037 ORTHO05D004744 3.9e-121 438.7 299 73.2
PSO675G6334 Papaver somniferum HOM05D004037 ORTHO05D004744 1.5e-120 436.8 301 72.4
PSO541G3258 Papaver somniferum HOM05D004037 ORTHO05D004744 1.9e-120 436.4 318 70.4
Cpa.g.sc182.24 Carica papaya HOM05D004037 ORTHO05D004744 2.5e-120 436.0 293 74.4
CDE02G2837 Ceratophyllum demersum HOM05D004037 ORTHO05D004744 4.3e-120 435.3 274 77.4
Peaxi162Scf00071g00719 Petunia axillaris HOM05D004037 ORTHO05D004744 1.6e-119 433.3 265 79.6
Oeu016121.2 Olea europaea HOM05D004037 ORTHO05D004744 2.2e-119 433.0 274 77.7
Cfa008527 Carpinus fangiana HOM05D004037 ORTHO05D004744 6.3e-119 431.4 319 72.7
BcaC02g07140 Brassica carinata HOM05D004037 ORTHO05D004744 3.1e-118 429.1 287 76.0
CDE05G0441 Ceratophyllum demersum HOM05D004037 ORTHO05D004744 4.1e-118 428.7 272 76.8
HPP92_022643 Vanilla planifolia HOM05D004037 ORTHO05D004744 5.3e-118 428.3 301 70.4
CSS0028639 Camellia sinensis var. sinensis HOM05D004037 ORTHO05D004744 6.9e-118 427.9 306 68.6
PSO339G4618 Papaver somniferum HOM05D004037 ORTHO05D004744 2.0e-117 426.4 328 65.2
Potri.007G145900 Populus trichocarpa HOM05D004037 ORTHO05D004744 2.0e-117 426.4 288 73.6
DCAR_002599 Daucus carota HOM05D004037 ORTHO05D004744 5.9e-117 424.9 299 71.2
MSTRG.7308 Avicennia marina HOM05D004037 ORTHO05D004744 1.0e-116 424.1 304 72.0
AUR62028616 Chenopodium quinoa HOM05D004037 ORTHO05D004744 1.1e-115 420.6 277 76.2
AUR62032340 Chenopodium quinoa HOM05D004037 ORTHO05D004744 1.9e-115 419.9 277 76.5
Lj6C283G4 Lonicera japonica HOM05D004037 ORTHO05D004744 1.9e-115 419.9 317 70.3
ATR0743G110 Amborella trichopoda HOM05D004037 ORTHO05D004744 7.9e-114 414.5 281 71.2
PSO384G4791 Papaver somniferum HOM05D004037 ORTHO05D004744 7.9e-114 414.5 325 64.3
Sabra17G0005900 Salix brachista HOM05D004037 ORTHO05D004744 2.5e-112 409.5 310 68.4
Os02g0436400 Oryza sativa ssp. japonica HOM05D004037 ORTHO05D004744 2.2e-111 406.4 302 67.9
Zm00001eb176170 Zea mays HOM05D004037 ORTHO05D004744 2.8e-111 406.0 312 65.7
BcaB06g29511 Brassica carinata HOM05D004037 ORTHO05D004744 3.7e-111 405.6 281 73.3
SalBow8G4021 Salvia bowleyana HOM05D004037 ORTHO05D004744 4.8e-111 405.2 274 74.1
HanXRQChr05g0133541 Helianthus annuus HOM05D004037 ORTHO05D004744 2.0e-109 399.8 297 68.4
Os03g0245100 Oryza sativa ssp. japonica HOM05D004037 ORTHO05D004744 5.9e-109 398.3 296 65.2
Oeu050828.1 Olea europaea HOM05D004037 ORTHO05D004744 5.5e-107 391.7 306 66.7
SGA_v2.0_scaffold22G09788 Striga asiatica HOM05D004037 ORTHO05D004744 1.2e-106 390.6 317 66.2
unitig_37.g12156 Utricularia gibba HOM05D004037 ORTHO05D004744 2.7e-106 389.4 277 71.1
Nn048s41912 Nelumbo nucifera HOM05D004037 ORTHO05D004744 2.6e-101 372.9 281 69.4
SEGI_29918 Sequoiadendron giganteum HOM05D004037 ORTHO05D004744 5.9e-101 371.7 318 60.1
Sopen01g041950 Solanum pennellii HOM05D004037 ORTHO05D004744 7.2e-99 364.8 241 75.1
Pp3c15_7380 Physcomitrium patens HOM05D004037 ORTHO05D004744 4.1e-94 349.0 277 63.5
SMO347G0499 Selaginella moellendorffii HOM05D004037 ORTHO05D004744 1.2e-93 347.4 288 59.4
CBR_g41668 Chara braunii HOM05D004037 ORTHO05D004744 5.0e-92 342.0 310 56.8
Peaxi162Scf00434g00730 Petunia axillaris HOM05D004037 ORTHO05D004744 1.8e-89 333.6 186 87.6
Dinv24475 Davidia involucrata HOM05D004037 ORTHO05D004744 3.2e-83 312.8 219 75.8
Mapoly0033s0134 Marchantia polymorpha HOM05D004037 ORTHO05D004744 4.4e-80 302.4 341 51.3
FAN20G0369 Fragaria x ananassa HOM05D004037 ORTHO05D004744 9.8e-80 301.2 189 81.0
Cre14.g627850 Chlamydomonas reinhardtii HOM05D004037 ORTHO05D004744 2.4e-78 296.6 306 51.3
Nitab4.5_0001165g0010 Nicotiana tabacum HOM05D004037 ORTHO05D004744 5.4e-78 295.4 214 72.4
PRCOL_00006631 Prasinoderma coloniale HOM05D004037 ORTHO05D004744 3.5e-77 292.7 273 50.9
MCO16G413 Micromonas commoda HOM05D004037 ORTHO05D004744 1.5e-75 287.3 286 55.9
Gohir.D09G124433 Gossypium hirsutum HOM05D004037 ORTHO05D004744 5.9e-69 265.4 239 62.3
Peaxi162Scf00434g00733 Petunia axillaris HOM05D004037 ORTHO05D004744 2.5e-67 260.0 218 65.1
Peaxi162Scf00434g00740 Petunia axillaris HOM05D004037 ORTHO05D004744 1.8e-65 253.8 174 75.9
Gorai.006G143300 Gossypium raimondii HOM05D004037 ORTHO05D004744 1.2e-61 241.1 224 60.7
BcaB01g03344 Brassica carinata HOM05D004037 ORTHO05D004744 2.6e-56 223.4 274 50.4
Actinidia11426 Actinidia chinensis HOM05D004037 ORTHO05D004744 6.4e-55 218.8 159 68.6
Nn048s41913 Nelumbo nucifera HOM05D004037 ORTHO05D004744 1.9e-54 217.2 123 86.2
Zm00001eb398800 Zea mays HOM05D004037 ORTHO05D004744 4.6e-53 212.6 177 59.3
Lsat_1_v5_gn_9_123180 Lactuca sativa HOM05D002510 ORTHO05D007210 1.9e-46 190.7 175 58.9
AagrBONN_evm.TU.Sc2ySwM_368.1842 Anthoceros agrestis HOM05D004037 ORTHO05D004744 1.2e-42 177.9 195 52.8
FvH4_2g00640 Fragaria vesca HOM05D004037 ORTHO05D004744 4.9e-39 166.0 90 86.7
AagrBONN_evm.TU.Sc2ySwM_368.1728 Anthoceros agrestis HOM05D004037 ORTHO05D004744 7.8e-37 158.7 138 60.1
PSO451G0001 Papaver somniferum HOM05D004037 ORTHO05D004744 1.2e-32 144.8 77 87.0
Cre16.g656300 Chlamydomonas reinhardtii HOM05D004037 ORTHO05D004744 3.4e-32 143.3 281 32.0
RhsimUnG0159300 Rhododendron simsii HOM05D004037 ORTHO05D004744 3.5e-29 133.3 208 44.2
MD02G1000400 Malus domestica HOM05D004037 ORTHO05D004744 4.3e-27 126.3 89 71.9
Peaxi162Scf00609g00310 Petunia axillaris HOM05D004037 ORTHO05D019316 2.1e-26 124.0 68 89.7
MBI01_g38182_MAGBIO Magnolia biondii HOM05D004037 ORTHO05D004744 3.6e-26 123.2 75 81.3
AagrBONN_evm.TU.Sc2ySwM_152.2 Anthoceros agrestis HOM05D004037 ORTHO05D004744 1.9e-22 110.9 164 42.1
ATR0716G071 Amborella trichopoda HOM05D004037 ORTHO05D004744 9.6e-19 98.6 66 78.8
AagrBONN_evm.TU.Sc2ySwM_344.5552 Anthoceros agrestis HOM05D004037 ORTHO05D004744 1.7e-15 87.8 83 56.6
AUR62041665 Chenopodium quinoa HOM05D006904 ORTHO05D008439 7.4e-11 72.4 81 49.4
SEGI_36179 Sequoiadendron giganteum HOM05D004037 ORTHO05D004744 1.7e-07 61.2 173 28.9
CAN.G1019.1 Capsicum annuum HOM05D004037 ORTHO05D004744 3.2e-06 57.0 59 45.8
Lsat_1_v5_gn_5_112181 Lactuca sativa HOM05D002510 ORTHO05D007210 4.2e-06 56.6 31 80.6


User provided reference genes

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