Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0020346 Sechium edule HOM05D004936 ORTHO05D005977 4.9e-74 281.2 156 100.0
Sed0012478 Sechium edule HOM05D004936 ORTHO05D005977 6.2e-45 184.5 162 72.2
ClCG03G000300 Citrullus lanatus HOM05D000089 ORTHO05D000104 1.1e-41 173.7 146 72.6
GSVIVG01024670001 Vitis vinifera HOM05D004936 ORTHO05D005977 1.3e-39 166.8 162 58.0
MELO3C020507.2 Cucumis melo HOM05D004936 ORTHO05D005977 3.9e-39 165.2 162 65.4
TAR636G1077 Trochodendron aralioides HOM05D004936 ORTHO05D005977 7.4e-38 161.0 162 56.2
Psat7g170640 Pisum sativum HOM05D004936 ORTHO05D005977 1.6e-37 159.8 162 65.4
Phvul.011G019700 Phaseolus vulgaris HOM05D004936 ORTHO05D005977 2.2e-37 159.5 162 64.2
CsaV3_1G036620 Cucumis sativus L. HOM05D004936 ORTHO05D005977 4.8e-37 158.3 146 56.8
VMungo1127G0545 Vigna mungo HOM05D004936 ORTHO05D005977 4.8e-37 158.3 162 64.2
CiPaw.13G071600 Carya illinoinensis HOM05D004936 ORTHO05D005977 8.2e-37 157.5 162 59.3
MD03G1061000 Malus domestica HOM05D004936 ORTHO05D005977 1.1e-36 157.1 131 74.0
Prupe.6G051100 Prunus persica HOM05D004936 ORTHO05D005977 1.4e-36 156.8 147 70.1
Glyma.12G017200 Glycine max HOM05D004936 ORTHO05D005977 2.4e-36 156.0 162 63.0
RcHm_v2.0_Chr5g0071211 Rosa chinensis HOM05D004936 ORTHO05D005977 3.1e-36 155.6 145 60.7
Dinv28681 Davidia involucrata HOM05D004936 ORTHO05D005977 9.0e-36 154.1 160 61.9
Glyma.09G223900 Glycine max HOM05D004936 ORTHO05D005977 1.5e-35 153.3 162 62.3
Lj3g0015200 Lotus japonicus HOM05D004936 ORTHO05D005977 2.0e-35 152.9 149 65.8
Medtr4g077950 Medicago truncatula HOM05D004936 ORTHO05D005977 2.0e-35 152.9 162 54.3
TPR.G39486 Trifolium pratense HOM05D004936 ORTHO05D005977 2.0e-35 152.9 162 63.0
CDE06G1927 Ceratophyllum demersum HOM05D004936 ORTHO05D005977 2.6e-35 152.5 154 59.1
PGR044G1703 Punica granatum HOM05D004936 ORTHO05D005977 2.6e-35 152.5 166 62.7
QL01p039898 Quercus lobata HOM05D004936 ORTHO05D005977 2.6e-35 152.5 163 63.2
Hma1.2p1_0146F.1_g065480 Hydrangea macrophylla HOM05D004936 ORTHO05D005977 4.5e-35 151.8 159 55.3
Lalb_Chr03g0024401 Lupinus albus HOM05D004936 ORTHO05D005977 4.5e-35 151.8 168 62.5
Ca_18959_v3 Cicer arietinum L. HOM05D000232 ORTHO05D000145 7.7e-35 151.0 144 68.1
Medtr2g070380 Medicago truncatula HOM05D004936 ORTHO05D005977 7.7e-35 151.0 162 53.7
SalBow5G1663 Salvia bowleyana HOM05D004936 ORTHO05D005977 7.7e-35 151.0 161 53.4
arahy.Tifrunner.gnm1.ann1.Z0D2FZ Arachis hypogaea HOM05D004936 ORTHO05D005977 1.0e-34 150.6 162 54.3
Thecc.03G057900 Theobroma cacao HOM05D004936 ORTHO05D005977 1.0e-34 150.6 161 62.1
Duzib084G0838 Durio zibethinus HOM05D004936 ORTHO05D005977 1.3e-34 150.2 161 61.5
PGSC0003DMG402019636 Solanum tuberosum HOM05D004936 ORTHO05D005977 1.3e-34 150.2 149 65.1
arahy.Tifrunner.gnm1.ann1.K3S5GW Arachis hypogaea HOM05D004936 ORTHO05D005977 1.7e-34 149.8 162 54.3
Haze_24392 Corylus avellana HOM05D004936 ORTHO05D005977 2.2e-34 149.4 144 65.3
HPP92_003695 Vanilla planifolia HOM05D004936 ORTHO05D005977 2.2e-34 149.4 162 63.0
Ciclev10029395m.g Citrus clementina HOM05D004936 ORTHO05D005977 2.9e-34 149.1 158 53.8
Nitab4.5_0002493g0030 Nicotiana tabacum HOM05D004936 ORTHO05D005977 2.9e-34 149.1 149 65.8
PSO832G3733 Papaver somniferum HOM05D004936 ORTHO05D005977 3.8e-34 148.7 149 59.7
Solyc11g068980.2 Solanum lycopersicum HOM05D004936 ORTHO05D005977 3.8e-34 148.7 149 64.4
Sopen11g027690 Solanum pennellii HOM05D004936 ORTHO05D005977 3.8e-34 148.7 149 64.4
Actinidia23210 Actinidia chinensis HOM05D004936 ORTHO05D005977 5.0e-34 148.3 143 65.0
ATR0691G226 Amborella trichopoda HOM05D004936 ORTHO05D005977 5.0e-34 148.3 149 64.4
CANSAT54G2258 Cannabis sativa HOM05D004936 ORTHO05D005977 5.0e-34 148.3 145 62.8
Nitab4.5_0000158g0090 Nicotiana tabacum HOM05D004936 ORTHO05D005977 6.5e-34 147.9 149 65.1
Nitab4.5_0000570g0350 Nicotiana tabacum HOM05D004936 ORTHO05D005977 6.5e-34 147.9 149 65.1
HanXRQChr14g0439861 Helianthus annuus HOM05D004936 ORTHO05D005977 8.5e-34 147.5 149 57.0
Peaxi162Scf00624g00914 Petunia axillaris HOM05D004936 ORTHO05D005977 8.5e-34 147.5 163 62.0
DCAR_018221 Daucus carota HOM05D004936 ORTHO05D005977 1.1e-33 147.1 141 66.0
SGA_v2.0_scaffold39G15257 Striga asiatica HOM05D004936 ORTHO05D005977 1.1e-33 147.1 162 61.1
Eucgr.K02762 Eucalyptus grandis HOM05D004936 ORTHO05D005977 1.4e-33 146.7 163 53.4
PSO210G4578 Papaver somniferum HOM05D004936 ORTHO05D005977 1.4e-33 146.7 149 59.1
CSS0031896 Camellia sinensis var. sinensis HOM05D004936 ORTHO05D005977 2.5e-33 146.0 164 51.8
CSS0046409 Camellia sinensis var. sinensis HOM05D004936 ORTHO05D005977 2.5e-33 146.0 164 51.8
Lsat_1_v5_gn_2_60241 Lactuca sativa HOM05D004936 ORTHO05D005977 2.5e-33 146.0 149 57.0
Oeu011630.1 Olea europaea HOM05D004936 ORTHO05D005977 2.5e-33 146.0 143 64.3
Cc05_g03440 Coffea canephora HOM05D004936 ORTHO05D005977 3.2e-33 145.6 162 59.9
Potri.009G076400 Populus trichocarpa HOM05D004936 ORTHO05D005977 3.2e-33 145.6 162 53.1
THA.LOC104812175 Tarenaya hassleriana HOM05D004936 ORTHO05D005977 4.2e-33 145.2 157 53.5
Duzib068G0913 Durio zibethinus HOM05D004936 ORTHO05D005977 5.5e-33 144.8 167 52.7
Gohir.A12G269500 Gossypium hirsutum HOM05D004936 ORTHO05D005977 5.5e-33 144.8 161 50.9
Cpa.g.sc2.381 Carica papaya HOM05D004936 ORTHO05D005977 7.2e-33 144.4 127 63.8
Gohir.D12G270000 Gossypium hirsutum HOM05D004936 ORTHO05D005977 9.4e-33 144.1 148 53.4
Gorai.008G290300 Gossypium raimondii HOM05D004936 ORTHO05D005977 9.4e-33 144.1 148 53.4
Manes.15G096000 Manihot esculenta HOM05D004936 ORTHO05D005977 1.2e-32 143.7 164 53.7
Aa31LG7G2800 Aethionema arabicum HOM05D004936 ORTHO05D005977 2.1e-32 142.9 163 50.3
FAN16G3562 Fragaria x ananassa HOM05D004936 ORTHO05D005977 2.1e-32 142.9 149 55.0
unitig_736.g22495 Utricularia gibba HOM05D004936 ORTHO05D005977 2.1e-32 142.9 161 51.6
CAN.G3648.1 Capsicum annuum HOM05D004936 ORTHO05D005977 2.7e-32 142.5 129 67.4
CAN.G689.18 Capsicum annuum HOM05D004936 ORTHO05D005977 2.7e-32 142.5 129 67.4
Cfa011755 Carpinus fangiana HOM05D000089 ORTHO05D000104 2.7e-32 142.5 142 64.8
FvH4_3g39470 Fragaria vesca HOM05D004936 ORTHO05D005977 2.7e-32 142.5 149 55.0
FAN11G2192 Fragaria x ananassa HOM05D004936 ORTHO05D005977 2.7e-32 142.5 149 55.0
FAN21G3073 Fragaria x ananassa HOM05D004936 ORTHO05D005977 2.7e-32 142.5 149 55.0
AUR62009688 Chenopodium quinoa HOM05D004936 ORTHO05D005977 4.6e-32 141.7 162 51.2
Atru.chr3.4141 Acer truncatum HOM05D004936 ORTHO05D005977 6.1e-32 141.4 165 51.5
MSTRG.4026 Avicennia marina HOM05D004936 ORTHO05D005977 7.9e-32 141.0 154 61.7
Ah.15g096180 Amaranthus hybridus HOM05D004936 ORTHO05D005977 1.0e-31 140.6 147 53.7
CiPaw.14G055600 Carya illinoinensis HOM05D004936 ORTHO05D005977 1.0e-31 140.6 134 68.7
Migut.G00331 Erythranthe guttata HOM05D004936 ORTHO05D005977 1.0e-31 140.6 156 52.6
Manes.03G100200 Manihot esculenta HOM05D004936 ORTHO05D005977 1.4e-31 140.2 164 53.0
Potri.001G281200 Populus trichocarpa HOM05D004936 ORTHO05D005977 1.8e-31 139.8 148 55.4
Zm00001eb013690 Zea mays HOM05D004936 ORTHO05D005977 1.8e-31 139.8 162 48.1
Thhalv10008922m.g Eutrema salsugineum HOM05D004936 ORTHO05D005977 2.3e-31 139.4 155 54.2
Nitab4.5_0003484g0120 Nicotiana tabacum HOM05D004936 ORTHO05D005977 3.0e-31 139.0 126 69.0
AUR62001892 Chenopodium quinoa HOM05D004936 ORTHO05D005977 6.7e-31 137.9 162 50.0
AL1G30690 Arabidopsis lyrata HOM05D004936 ORTHO05D005977 1.1e-30 137.1 139 55.4
BraA08t34977Z Brassica rapa HOM05D004936 ORTHO05D005977 1.1e-30 137.1 161 50.3
Rhsim13G0065400 Rhododendron simsii HOM05D004936 ORTHO05D005977 1.1e-30 137.1 149 53.0
Sp1g16280 Schrenkiella parvula HOM05D004936 ORTHO05D005977 1.5e-30 136.7 139 55.4
Aqoxy1G01790 Aquilegia oxysepala HOM05D004936 ORTHO05D005977 2.5e-30 136.0 165 52.7
DCAR_027925 Daucus carota HOM05D004936 ORTHO05D005977 2.5e-30 136.0 127 63.8
Os03g0296300 Oryza sativa ssp. japonica HOM05D004936 ORTHO05D005977 3.3e-30 135.6 147 51.0
TWI75G1184 Tripterygium wilfordii HOM05D004936 ORTHO05D005977 3.3e-30 135.6 148 63.5
EL10Ac7g15900 Beta vulgaris HOM05D004936 ORTHO05D005977 4.3e-30 135.2 162 49.4
BcaC07g38896 Brassica carinata HOM05D004936 ORTHO05D005977 4.3e-30 135.2 161 49.7
C08p18520 Brassica napus HOM05D004936 ORTHO05D005977 4.3e-30 135.2 161 49.7
C08p43440 Brassica napus HOM05D004936 ORTHO05D005977 4.3e-30 135.2 149 51.7
BolC8t49484H Brassica oleracea HOM05D004936 ORTHO05D005977 4.3e-30 135.2 161 49.7
BolC8t51892H Brassica oleracea HOM05D004936 ORTHO05D005977 4.3e-30 135.2 149 51.7
Carub.0001s1794 Capsella rubella HOM05D004936 ORTHO05D005977 4.3e-30 135.2 146 52.7
Lj2A1091T51 Lonicera japonica HOM05D004936 ORTHO05D005977 4.3e-30 135.2 144 62.5
Hund18959 Selenicereus undatus HOM05D004936 ORTHO05D005977 4.3e-30 135.2 142 55.6
TWI79G0082 Tripterygium wilfordii HOM05D004936 ORTHO05D005977 5.7e-30 134.8 148 62.8
BcaC07g41334 Brassica carinata HOM05D004936 ORTHO05D005977 1.3e-29 133.7 149 51.0
A08p30450 Brassica napus HOM05D004936 ORTHO05D005977 1.3e-29 133.7 158 50.0
A09p59990 Brassica napus HOM05D004936 ORTHO05D005977 1.3e-29 133.7 158 50.0
BraA09t41369Z Brassica rapa HOM05D004936 ORTHO05D005977 1.3e-29 133.7 158 50.0
COL.COLO4_31393 Corchorus olitorius HOM05D004936 ORTHO05D005977 2.8e-29 132.5 163 47.9
FAN25G3861 Fragaria x ananassa HOM05D004936 ORTHO05D005977 2.8e-29 132.5 134 56.0
Nn2g10980 Nelumbo nucifera HOM05D004936 ORTHO05D005977 2.8e-29 132.5 169 56.8
ECA238G2024 Erigeron canadensis HOM05D004936 ORTHO05D005977 8.2e-29 131.0 156 52.6
CARHR018890 Cardamine hirsuta HOM05D004936 ORTHO05D005977 1.4e-28 130.2 156 48.7
BcaB03g12974 Brassica carinata HOM05D004936 ORTHO05D005977 1.8e-28 129.8 162 46.9
BcaNung05441 Brassica carinata HOM05D004936 ORTHO05D005977 1.8e-28 129.8 162 46.9
Sabra16G0174900 Salix brachista HOM05D004936 ORTHO05D005977 1.8e-28 129.8 150 48.0
COL.COLO4_04994 Corchorus olitorius HOM05D000034 ORTHO05D000037 6.9e-28 127.9 147 49.0
Nn5g31489 Nelumbo nucifera HOM05D004936 ORTHO05D005977 1.2e-27 127.1 151 58.9
Nn6g34585 Nelumbo nucifera HOM05D004936 ORTHO05D005977 5.9e-27 124.8 149 59.1
Lj1A128T43 Lonicera japonica HOM05D004936 ORTHO05D005977 1.0e-26 124.0 133 61.7
SMO353G0176 Selaginella moellendorffii HOM05D004936 ORTHO05D005977 8.5e-26 120.9 159 45.3
vmacro02929 Vaccinium macrocarpon HOM05D004936 ORTHO05D005977 1.1e-25 120.6 197 40.1
MD11G1063700 Malus domestica HOM05D004936 ORTHO05D005977 6.7e-23 111.3 128 53.1
Oeu023392.2 Olea europaea HOM05D004936 ORTHO05D005977 6.7e-23 111.3 129 49.6
Mapoly0036s0081 Marchantia polymorpha HOM05D004936 ORTHO05D005977 1.5e-22 110.2 162 44.4
AagrBONN_evm.TU.Sc2ySwM_344.4538 Anthoceros agrestis HOM05D004936 ORTHO05D005977 3.3e-22 109.0 155 51.6
Pp3c12_17590 Physcomitrium patens HOM05D004936 ORTHO05D005977 7.4e-22 107.8 151 45.7
AT3G10110 Arabidopsis thaliana HOM05D004936 ORTHO05D005977 5.9e-19 98.2 111 50.5
SEGI_35825 Sequoiadendron giganteum HOM05D004936 ORTHO05D005977 5.9e-19 98.2 95 58.9
TAR633G2185 Trochodendron aralioides HOM05D004936 ORTHO05D005977 7.7e-19 97.8 114 59.6
TPR.G26511 Trifolium pratense HOM05D004936 ORTHO05D005977 6.5e-18 94.7 95 56.8
Sc12g0000320 Simmondsia chinensis HOM05D004936 ORTHO05D005977 1.9e-17 93.2 95 56.8
CANSAT21G2196 Cannabis sativa HOM05D004936 ORTHO05D005977 1.6e-16 90.1 75 61.3
Dinv09657 Davidia involucrata HOM05D004936 ORTHO05D005977 5.7e-14 81.6 70 62.9
MD11G1064100 Malus domestica HOM05D004936 ORTHO05D005977 1.3e-13 80.5 69 56.5
CBR_g19040 Chara braunii HOM05D004936 ORTHO05D005977 2.8e-13 79.3 151 32.5
Dinv09658 Davidia involucrata HOM05D004936 ORTHO05D005977 2.4e-12 76.3 73 69.9
Zm00001eb223780 Zea mays HOM05D004936 ORTHO05D005977 2.4e-12 76.3 88 48.9
Zm00001eb130910 Zea mays HOM05D004936 ORTHO05D005977 3.1e-12 75.9 89 50.6
MD11G1064200 Malus domestica HOM05D004936 ORTHO05D005977 1.0e-10 70.9 58 67.2
Nn6g32762 Nelumbo nucifera HOM05D004936 ORTHO05D005977 1.5e-09 67.0 55 63.6
TPR.G39290 Trifolium pratense HOM05D004936 ORTHO05D005977 6.1e-08 61.6 40 67.5
Cre01.g021050 Chlamydomonas reinhardtii HOM05D004936 ORTHO05D005977 8.0e-08 61.2 145 32.4
MD05G1160000 Malus domestica HOM05D004936 ORTHO05D005977 1.4e-07 60.5 43 65.1
Nitab4.5_0001270g0210 Nicotiana tabacum HOM05D004936 ORTHO05D005977 3.3e-06 55.8 68 48.5


User provided reference genes

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