Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0020280 Sechium edule HOM05D004898 ORTHO05D005574 3.7e-310 1067.4 539 100.0
ClCG01G010280 Citrullus lanatus HOM05D004898 ORTHO05D005574 3.8e-283 977.6 539 91.1
CsaV3_1G017190 Cucumis sativus L. HOM05D004898 ORTHO05D005574 2.4e-277 958.4 540 89.4
MELO3C025563.2 Cucumis melo HOM05D004898 ORTHO05D005574 4.5e-276 954.1 540 88.7
FvH4_3g00891 Fragaria vesca HOM05D004898 ORTHO05D005574 9.2e-237 823.5 535 75.3
RcHm_v2.0_Chr5g0001371 Rosa chinensis HOM05D004898 ORTHO05D005574 3.5e-236 821.6 530 75.3
FAN21G2703 Fragaria x ananassa HOM05D004898 ORTHO05D005574 4.7e-233 811.2 535 74.0
Dinv07411 Davidia involucrata HOM05D004898 ORTHO05D005574 8.0e-233 810.4 534 74.0
MD05G1358600 Malus domestica HOM05D004898 ORTHO05D005574 4.4e-231 804.7 528 75.0
Oeu052872.1 Olea europaea HOM05D004898 ORTHO05D005574 7.5e-231 803.9 537 74.5
Sabra06G0009800 Salix brachista HOM05D004898 ORTHO05D005574 8.3e-230 800.4 534 74.5
QL05p069311 Quercus lobata HOM05D004898 ORTHO05D005574 1.4e-229 799.7 537 73.6
Prupe.4G009500 Prunus persica HOM05D004898 ORTHO05D005574 1.8e-229 799.3 537 74.3
Potri.006G013900 Populus trichocarpa HOM05D004898 ORTHO05D005574 1.0e-227 793.5 535 74.4
Rhsim13G0144800 Rhododendron simsii HOM05D004898 ORTHO05D005574 1.3e-227 793.1 521 75.0
CAN.G1186.45 Capsicum annuum HOM05D004898 ORTHO05D005574 2.3e-227 792.3 545 71.6
Cfa000089 Carpinus fangiana HOM05D004898 ORTHO05D005574 1.9e-226 789.3 526 72.8
Cfa000090 Carpinus fangiana HOM05D004898 ORTHO05D005574 2.5e-226 788.9 526 73.8
Actinidia39792 Actinidia chinensis HOM05D004898 ORTHO05D005574 1.6e-225 786.2 525 73.5
MD10G1333000 Malus domestica HOM05D004898 ORTHO05D005574 1.6e-225 786.2 529 73.3
CiPaw.09G103400 Carya illinoinensis HOM05D004898 ORTHO05D005574 2.8e-225 785.4 526 73.2
Atru.chr1.2413_Atru.chr1.2414 Acer truncatum HOM05D004898 ORTHO05D005574 3.6e-225 785.0 531 73.6
Manes.08G069675 Manihot esculenta HOM05D004898 ORTHO05D005574 6.2e-225 784.3 537 73.0
Ciclev10014770m.g Citrus clementina HOM05D004898 ORTHO05D005574 1.4e-224 783.1 539 72.5
Haze_06951 Corylus avellana HOM05D004898 ORTHO05D005574 1.4e-224 783.1 528 73.5
Eucgr.E03924 Eucalyptus grandis HOM05D004898 ORTHO05D005574 7.5e-223 777.3 527 74.8
CSS0045138 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 3.7e-222 775.0 535 71.0
CANSAT56G0760 Cannabis sativa HOM05D004898 ORTHO05D005574 4.9e-222 774.6 528 72.2
Thecc.06G234600 Theobroma cacao HOM05D004898 ORTHO05D005574 7.0e-221 770.8 534 71.5
Lsat_1_v5_gn_7_13740 Lactuca sativa HOM05D004898 ORTHO05D005574 1.2e-220 770.0 517 73.9
Prupe.4G009400 Prunus persica HOM05D004898 ORTHO05D005574 6.0e-220 767.7 524 72.5
Solyc11g012360.2 Solanum lycopersicum HOM05D004898 ORTHO05D005574 2.3e-219 765.8 546 70.3
PSO541G1832 Papaver somniferum HOM05D004898 ORTHO05D005574 5.0e-219 764.6 528 71.0
FvH4_3g00890 Fragaria vesca HOM05D004898 ORTHO05D005574 6.6e-219 764.2 527 71.3
Lj1A1241T64 Lonicera japonica HOM05D004898 ORTHO05D005574 8.6e-219 763.8 525 72.0
Nn1g03284 Nelumbo nucifera HOM05D004898 ORTHO05D005574 8.6e-219 763.8 533 72.4
TWI38G1092 Tripterygium wilfordii HOM05D004898 ORTHO05D005574 2.5e-218 762.3 535 71.6
SGA_v2.0_scaffold7G03752 Striga asiatica HOM05D004898 ORTHO05D005574 3.3e-218 761.9 527 72.5
RcHm_v2.0_Chr5g0001361 Rosa chinensis HOM05D004898 ORTHO05D005574 5.6e-218 761.1 522 70.9
Gohir.A06G153700 Gossypium hirsutum HOM05D004898 ORTHO05D005574 9.5e-218 760.4 529 69.9
Gohir.D06G160500 Gossypium hirsutum HOM05D004898 ORTHO05D005574 9.5e-218 760.4 529 70.1
FAN21G0575 Fragaria x ananassa HOM05D004898 ORTHO05D005574 1.2e-217 760.0 527 71.0
Peaxi162Scf00352g00047 Petunia axillaris HOM05D004898 ORTHO05D005574 4.7e-217 758.1 518 73.6
Gorai.010G187200 Gossypium raimondii HOM05D004898 ORTHO05D005574 3.1e-216 755.4 520 70.8
Cc09_g00800 Coffea canephora HOM05D004898 ORTHO05D005574 5.2e-216 754.6 461 80.0
Duzib160G0749 Durio zibethinus HOM05D004898 ORTHO05D005574 6.8e-216 754.2 530 70.4
DCAR_030865 Daucus carota HOM05D004898 ORTHO05D005574 5.8e-215 751.1 515 71.1
FAN25G1838 Fragaria x ananassa HOM05D004898 ORTHO05D005574 1.7e-214 749.6 529 70.9
PSO675G0622 Papaver somniferum HOM05D004898 ORTHO05D005574 3.7e-214 748.4 515 71.5
THA.LOC104806731 Tarenaya hassleriana HOM05D004898 ORTHO05D005574 2.4e-213 745.7 538 69.3
Hund23404 Selenicereus undatus HOM05D004898 ORTHO05D005574 4.1e-213 745.0 535 69.3
BcaC03g16972 Brassica carinata HOM05D004898 ORTHO05D005574 1.6e-212 743.0 536 70.0
C02p48760 Brassica napus HOM05D004898 ORTHO05D005574 1.6e-212 743.0 536 70.0
BolC2t10970H Brassica oleracea HOM05D004898 ORTHO05D005574 1.6e-212 743.0 536 70.0
AL8G10410 Arabidopsis lyrata HOM05D004898 ORTHO05D005574 3.5e-212 741.9 539 69.8
A02p31430 Brassica napus HOM05D004898 ORTHO05D005574 4.6e-212 741.5 536 70.1
Sp2g12290 Schrenkiella parvula HOM05D004898 ORTHO05D005574 1.7e-211 739.6 538 69.5
MBI19_g06154_MAGBIO Magnolia biondii HOM05D004898 ORTHO05D005574 6.6e-211 737.6 535 68.0
GSVIVG01003326001 Vitis vinifera HOM05D004898 ORTHO05D005574 1.9e-210 736.1 463 76.5
BraA02t08145Z Brassica rapa HOM05D004898 ORTHO05D005574 2.5e-210 735.7 534 69.7
Thhalv10000848m.g Eutrema salsugineum HOM05D004898 ORTHO05D005574 3.3e-210 735.3 532 70.1
Glyma.15G115200 Glycine max HOM05D004898 ORTHO05D005574 9.5e-210 733.8 540 66.5
AT5G47560 Arabidopsis thaliana HOM05D004898 ORTHO05D005574 1.6e-209 733.0 539 69.4
VMungo0540G1349 Vigna mungo HOM05D004898 ORTHO05D005574 2.1e-209 732.6 534 67.2
CARHR173790 Cardamine hirsuta HOM05D004898 ORTHO05D005574 2.8e-209 732.3 538 68.4
ECA240G2526 Erigeron canadensis HOM05D004898 ORTHO05D005574 3.6e-209 731.9 467 77.3
EL10Ac8g20211 Beta vulgaris HOM05D004898 ORTHO05D005574 4.7e-209 731.5 532 69.7
Carub.0008s0022 Capsella rubella HOM05D004898 ORTHO05D005574 8.1e-209 730.7 540 68.3
Glyma.09G010700 Glycine max HOM05D004898 ORTHO05D005574 1.4e-208 729.9 540 66.1
HanXRQChr05g0129101 Helianthus annuus HOM05D004898 ORTHO05D005574 4.0e-208 728.4 505 70.1
A06p44970 Brassica napus HOM05D004898 ORTHO05D005574 6.8e-208 727.6 540 68.0
AUR62012806 Chenopodium quinoa HOM05D004898 ORTHO05D005574 6.8e-208 727.6 518 69.7
BcaC06g31373 Brassica carinata HOM05D004898 ORTHO05D005574 1.5e-207 726.5 540 67.8
BolC7t43662H Brassica oleracea HOM05D004898 ORTHO05D005574 1.5e-207 726.5 540 67.6
Aa31LG9G5480 Aethionema arabicum HOM05D004898 ORTHO05D005574 2.6e-207 725.7 521 71.0
C07p31210 Brassica napus HOM05D004898 ORTHO05D005574 3.4e-207 725.3 540 67.4
PGSC0003DMG400013282 Solanum tuberosum HOM05D004898 ORTHO05D005574 4.4e-207 724.9 483 73.7
BraA06t27368Z Brassica rapa HOM05D004898 ORTHO05D005574 5.8e-207 724.5 544 67.5
Sopen11g007110 Solanum pennellii HOM05D004898 ORTHO05D005574 9.9e-207 723.8 483 73.7
C09p29850 Brassica napus HOM05D004898 ORTHO05D005574 2.9e-206 722.2 538 67.1
BcaC04g21615 Brassica carinata HOM05D004898 ORTHO05D005574 3.8e-206 721.8 538 67.1
BolC9t55848H Brassica oleracea HOM05D004898 ORTHO05D005574 3.8e-206 721.8 538 67.1
Psat4g004680 Pisum sativum HOM05D004898 ORTHO05D005574 8.4e-206 720.7 544 66.4
A09p23110 Brassica napus HOM05D004898 ORTHO05D005574 2.4e-205 719.2 538 66.7
Medtr4g133230 Medicago truncatula HOM05D004898 ORTHO05D005574 2.4e-205 719.2 540 65.9
PGR042G1052 Punica granatum HOM05D004898 ORTHO05D005574 1.2e-204 716.8 523 69.6
Gohir.D10G008600 Gossypium hirsutum HOM05D004898 ORTHO05D005574 1.6e-204 716.5 536 67.7
Psat1g175640 Pisum sativum HOM05D004898 ORTHO05D005574 1.6e-204 716.5 531 65.7
BraA09t37914Z Brassica rapa HOM05D004898 ORTHO05D005574 3.5e-204 715.3 538 66.4
Lj4g0027564 Lotus japonicus HOM05D004898 ORTHO05D005574 4.6e-204 714.9 542 65.7
arahy.Tifrunner.gnm1.ann1.L2E3EJ Arachis hypogaea HOM05D004898 ORTHO05D005574 7.8e-204 714.1 540 65.4
Lalb_Chr18g0057021 Lupinus albus HOM05D004898 ORTHO05D005574 1.3e-203 713.4 535 65.2
Nitab4.5_0000143g0160 Nicotiana tabacum HOM05D004898 ORTHO05D005574 1.3e-203 713.4 518 68.9
arahy.Tifrunner.gnm1.ann1.GM6TB3 Arachis hypogaea HOM05D004898 ORTHO05D005574 1.7e-203 713.0 528 65.9
COL.COLO4_31899 Corchorus olitorius HOM05D004898 ORTHO05D005574 3.9e-203 711.8 534 68.2
Medtr2g026030 Medicago truncatula HOM05D004898 ORTHO05D005574 3.9e-203 711.8 528 65.3
arahy.Tifrunner.gnm1.ann1.ZF0ICG Arachis hypogaea HOM05D004898 ORTHO05D005574 5.1e-203 711.4 528 65.7
HPP92_022800 Vanilla planifolia HOM05D004898 ORTHO05D005574 5.1e-203 711.4 524 68.5
Lj6g0016962 Lotus japonicus HOM05D004898 ORTHO05D005574 6.6e-203 711.1 528 65.5
arahy.Tifrunner.gnm1.ann1.5M9JPT Arachis hypogaea HOM05D004898 ORTHO05D005574 1.6e-201 706.4 540 64.8
BcaC06g34240 Brassica carinata HOM05D004898 ORTHO05D005574 1.6e-201 706.4 528 67.2
Gohir.A10G008900 Gossypium hirsutum HOM05D004898 ORTHO05D005574 1.6e-201 706.4 530 67.4
Sc05g0009650 Simmondsia chinensis HOM05D004898 ORTHO05D005574 1.9e-197 693.0 536 65.9
Phvul.006G142700 Phaseolus vulgaris HOM05D004898 ORTHO05D005574 5.4e-197 691.4 465 71.4
GSVIVG01006080001 Vitis vinifera HOM05D004898 ORTHO05D005574 7.8e-196 687.6 436 76.4
Gorai.011G009400 Gossypium raimondii HOM05D004898 ORTHO05D005574 7.3e-194 681.0 536 65.5
VMungo0540G0197 Vigna mungo HOM05D004898 ORTHO05D005574 3.0e-187 659.1 528 61.9
Os09g0484900 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 3.7e-185 652.1 536 60.4
Actinidia34018 Actinidia chinensis HOM05D004898 ORTHO05D005574 1.4e-184 650.2 452 71.7
SalBow8G1501 Salvia bowleyana HOM05D004898 ORTHO05D005574 6.9e-184 647.9 439 72.2
unitig_748.g7600 Utricularia gibba HOM05D004898 ORTHO05D005574 6.9e-184 647.9 457 68.5
Zm00001eb316570 Zea mays HOM05D004898 ORTHO05D005574 8.7e-179 630.9 528 59.8
Zm00001eb158920 Zea mays HOM05D004898 ORTHO05D005574 6.2e-177 624.8 534 59.0
Os08g0503700 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 2.6e-175 619.4 543 58.4
TPR.G30453 Trifolium pratense HOM05D004898 ORTHO05D005574 7.4e-170 601.3 528 57.6
Aqoxy4G02191 Aquilegia oxysepala HOM05D004898 ORTHO05D005574 1.0e-166 590.9 388 73.5
Ca_00729_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 2.2e-166 589.7 460 62.2
TPR.G30452 Trifolium pratense HOM05D004898 ORTHO05D005574 2.9e-166 589.3 541 57.1
vmacro03635 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 9.4e-165 584.3 390 72.8
CSS0031856 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 1.0e-158 564.3 383 71.3
TPR.G5945 Trifolium pratense HOM05D004898 ORTHO05D005574 6.7e-155 551.6 394 67.0
Ca_21041_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 6.3e-153 545.0 386 67.6
MD10G1332900 Malus domestica HOM05D004898 ORTHO05D005574 3.3e-146 522.7 363 71.3
Migut.M01405 Erythranthe guttata HOM05D004898 ORTHO05D005574 4.5e-135 485.7 321 73.8
AUR62021848 Chenopodium quinoa HOM05D004898 ORTHO05D005574 1.2e-130 471.1 352 66.5
SMO118G0209 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 1.5e-130 470.7 475 49.1
AagrBONN_evm.TU.Sc2ySwM_117.1091 Anthoceros agrestis HOM05D004898 ORTHO05D005574 2.0e-130 470.3 538 45.7
SEGI_04913 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 8.6e-126 454.9 326 67.5
SMO270G0136 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 4.4e-122 442.6 456 48.2
Pp3c15_15560 Physcomitrium patens HOM05D004898 ORTHO05D005574 3.5e-119 433.0 540 42.4
Mapoly0082s0008 Marchantia polymorpha HOM05D004898 ORTHO05D005574 1.2e-106 391.3 547 38.2
Eucgr.L01902 Eucalyptus grandis HOM05D004898 ORTHO05D005574 3.7e-97 359.8 224 80.4
Nitab4.5_0003626g0040 Nicotiana tabacum HOM05D004898 ORTHO05D005574 4.3e-93 346.3 260 66.5
BcaC06g31368 Brassica carinata HOM05D004898 ORTHO05D005574 2.5e-69 267.3 194 66.0
FAN22G1464 Fragaria x ananassa HOM05D004898 ORTHO05D005574 1.1e-67 261.9 188 69.7
Glyma.07G265900 Glycine max HOM05D004898 ORTHO05D005574 1.6e-63 248.1 184 67.4
Glyma.09G010800 Glycine max HOM05D004898 ORTHO05D005574 3.0e-54 217.2 173 60.1
BcaC06g31369 Brassica carinata HOM05D004898 ORTHO05D005574 3.9e-54 216.9 162 68.5
CSS0039577 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 7.4e-53 212.6 151 69.5
vmacro03636 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 1.2e-50 205.3 137 73.0
MD10G1332700 Malus domestica HOM05D004898 ORTHO05D005574 1.8e-46 191.4 158 63.9
TPR.G39985 Trifolium pratense HOM05D004898 ORTHO05D005574 3.9e-46 190.3 159 59.1
TPR.G16605 Trifolium pratense HOM05D004898 ORTHO05D005574 1.0e-38 165.6 151 60.3
Oeu026504.1 Olea europaea HOM05D004898 ORTHO05D005574 5.7e-29 133.3 150 49.3
CiPaw.02G047500 Carya illinoinensis HOM05D004898 ORTHO05D005574 4.8e-28 130.2 95 64.2
SEGI_30483 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 2.6e-26 124.4 115 57.4
Cfa025410 Carpinus fangiana HOM05D004898 ORTHO05D005574 2.3e-22 111.3 471 24.4
MD10G1333600 Malus domestica HOM05D004898 ORTHO05D005574 1.7e-20 105.1 77 70.1
Cre06.g251650 Chlamydomonas reinhardtii HOM05D004898 ORTHO05D005574 1.2e-18 99.0 463 24.6
TPR.G14633 Trifolium pratense HOM05D004898 ORTHO05D005574 2.9e-17 94.4 71 62.0
SEGI_07134 Sequoiadendron giganteum HOM05D001687 ORTHO05D001608 2.2e-12 78.2 67 56.7
SEGI_26459 Sequoiadendron giganteum HOM05D000824 ORTHO05D001608 2.2e-12 78.2 67 56.7
Zm00001eb349350 Zea mays HOM05D004186 ORTHO05D006965 3.8e-09 67.4 46 65.2
Zm00001eb361420 Zea mays HOM05D032919 ORTHO05D005574 8.6e-09 66.2 45 64.4
VMungo1383G2427 Vigna mungo HOM05D035140 ORTHO05D005574 4.2e-08 63.9 49 59.2
Zm00001eb140760 Zea mays HOM05D004186 ORTHO05D003061 9.5e-08 62.8 46 60.9


User provided reference genes

Program Settings