Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0020251 Sechium edule HOM05D006959 ORTHO05D008808 1.6e-115 419.5 215 100.0
CsaV3_6G033990 Cucumis sativus L. HOM05D006959 ORTHO05D008808 2.2e-88 329.3 213 80.3
ClCG08G006070 Citrullus lanatus HOM05D006959 ORTHO05D008808 9.4e-84 313.9 249 69.5
MELO3C008461.2 Cucumis melo HOM05D006959 ORTHO05D008808 4.4e-81 305.1 225 72.4
CiPaw.16G022000 Carya illinoinensis HOM05D006959 ORTHO05D008808 3.8e-69 265.4 210 66.2
Thecc.08G134700 Theobroma cacao HOM05D006959 ORTHO05D008808 5.0e-69 265.0 209 67.5
Cfa018414 Carpinus fangiana HOM05D006959 ORTHO05D008808 7.2e-68 261.2 213 65.7
PGR042G0886 Punica granatum HOM05D006959 ORTHO05D008808 3.6e-67 258.8 226 61.1
Gorai.009G249600 Gossypium raimondii HOM05D006959 ORTHO05D008808 1.0e-66 257.3 207 66.7
Gohir.D05G240800 Gossypium hirsutum HOM05D006959 ORTHO05D008808 2.3e-66 256.1 207 66.2
Manes.18G084200 Manihot esculenta HOM05D006959 ORTHO05D008808 4.0e-66 255.4 207 67.1
TWI32G1355 Tripterygium wilfordii HOM05D006959 ORTHO05D008808 4.0e-66 255.4 213 61.5
Duzib093G2176 Durio zibethinus HOM05D006959 ORTHO05D008808 5.2e-66 255.0 208 65.9
QL09p031413 Quercus lobata HOM05D006959 ORTHO05D008808 6.8e-66 254.6 209 65.1
QL09p031824 Quercus lobata HOM05D006959 ORTHO05D008808 6.8e-66 254.6 209 65.1
Gohir.A05G238900 Gossypium hirsutum HOM05D006959 ORTHO05D008808 1.3e-64 250.4 207 65.2
Ciclev10002542m.g Citrus clementina HOM05D006959 ORTHO05D008808 2.2e-64 249.6 207 64.3
Eucgr.F03861 Eucalyptus grandis HOM05D006959 ORTHO05D008808 6.3e-64 248.1 218 60.6
FvH4_2g28060 Fragaria vesca HOM05D006959 ORTHO05D008808 2.4e-63 246.1 217 59.0
Atru.chr13.1599 Acer truncatum HOM05D006959 ORTHO05D008808 3.1e-63 245.7 208 65.9
TAR381G0659 Trochodendron aralioides HOM05D006959 ORTHO05D008808 3.1e-63 245.7 209 61.7
FAN24G0315 Fragaria x ananassa HOM05D006959 ORTHO05D008808 9.2e-63 244.2 217 59.0
FAN27G3284 Fragaria x ananassa HOM05D006959 ORTHO05D008808 1.2e-62 243.8 217 58.5
Haze_17647 Corylus avellana HOM05D006959 ORTHO05D008808 3.5e-62 242.3 231 60.2
Hma1.2p1_0159F.1_g070330 Hydrangea macrophylla HOM05D006959 ORTHO05D008808 3.5e-62 242.3 211 61.1
Nn1g08935 Nelumbo nucifera HOM05D006959 ORTHO05D008808 4.5e-62 241.9 212 61.3
Lj4A666T17 Lonicera japonica HOM05D006959 ORTHO05D008808 1.3e-61 240.4 216 61.6
Oeu026374.1 Olea europaea HOM05D006959 ORTHO05D008808 1.3e-61 240.4 217 60.4
THA.LOC104813687 Tarenaya hassleriana HOM05D006959 ORTHO05D008808 1.7e-61 240.0 215 59.5
MD15G1131600 Malus domestica HOM05D006959 ORTHO05D008808 5.0e-61 238.4 215 61.9
RcHm_v2.0_Chr6g0297021 Rosa chinensis HOM05D006959 ORTHO05D008808 8.6e-61 237.7 218 56.0
Migut.C01073 Erythranthe guttata HOM05D006959 ORTHO05D008808 1.5e-60 236.9 216 60.6
Cc10_g14010 Coffea canephora HOM05D006959 ORTHO05D008808 2.5e-60 236.1 210 62.4
Potri.002G076700 Populus trichocarpa HOM05D006959 ORTHO05D008808 2.5e-60 236.1 207 62.8
VMungo0647G0259 Vigna mungo HOM05D006959 ORTHO05D008808 7.3e-60 234.6 207 59.9
COL.COLO4_32963 Corchorus olitorius HOM05D006959 ORTHO05D008808 9.5e-60 234.2 210 60.5
Lsat_1_v5_gn_1_10340 Lactuca sativa HOM05D006959 ORTHO05D008808 9.5e-60 234.2 215 59.5
Phvul.001G066600 Phaseolus vulgaris HOM05D006959 ORTHO05D008808 9.5e-60 234.2 207 59.9
Lj4A663T33 Lonicera japonica HOM05D006959 ORTHO05D008808 1.2e-59 233.8 212 61.3
Hund17359 Selenicereus undatus HOM05D006959 ORTHO05D008808 2.1e-59 233.0 207 60.4
Cpa.g.sc64.158 Carica papaya HOM05D006959 ORTHO05D008808 2.8e-59 232.6 210 62.9
HanXRQChr02g0045531 Helianthus annuus HOM05D006959 ORTHO05D008808 1.0e-58 230.7 209 60.8
GSVIVG01008793001 Vitis vinifera HOM05D006959 ORTHO05D008808 1.4e-58 230.3 163 73.0
Glyma.13G035500 Glycine max HOM05D006959 ORTHO05D008808 2.3e-58 229.6 207 59.9
Sopen04g026100 Solanum pennellii HOM05D006959 ORTHO05D008808 1.2e-57 227.3 209 57.9
Nitab4.5_0002625g0010 Nicotiana tabacum HOM05D006959 ORTHO05D008808 2.6e-57 226.1 210 57.6
PGSC0003DMG402018005 Solanum tuberosum HOM05D006959 ORTHO05D008808 2.2e-56 223.0 209 57.4
FAN20G3215 Fragaria x ananassa HOM05D006959 ORTHO05D008808 2.9e-56 222.6 217 56.7
PGSC0003DMG403018005 Solanum tuberosum HOM05D006959 ORTHO05D008808 8.3e-56 221.1 209 57.9
Thhalv10019109m.g Eutrema salsugineum HOM05D006959 ORTHO05D008808 1.8e-55 219.9 219 54.8
Aqoxy6G00289 Aquilegia oxysepala HOM05D006959 ORTHO05D008808 2.4e-55 219.5 139 74.8
MSTRG.1406 Avicennia marina HOM05D006959 ORTHO05D008808 7.0e-55 218.0 216 56.5
Peaxi162Scf00066g00072 Petunia axillaris HOM05D006959 ORTHO05D008808 7.0e-55 218.0 212 56.6
Actinidia24726 Actinidia chinensis HOM05D006959 ORTHO05D008808 9.2e-55 217.6 178 64.6
arahy.Tifrunner.gnm1.ann1.P1MCWD Arachis hypogaea HOM05D006959 ORTHO05D008808 1.2e-54 217.2 208 57.7
Sp5g32400 Schrenkiella parvula HOM05D006959 ORTHO05D008808 1.6e-54 216.9 212 56.6
AUR62007695 Chenopodium quinoa HOM05D006959 ORTHO05D008808 2.0e-54 216.5 219 56.6
AL2G37400 Arabidopsis lyrata HOM05D006959 ORTHO05D008808 4.6e-54 215.3 216 56.5
Carub.0002s2410 Capsella rubella HOM05D006959 ORTHO05D008808 4.6e-54 215.3 222 55.0
SalBow7G4180 Salvia bowleyana HOM05D006959 ORTHO05D008808 4.6e-54 215.3 240 52.5
AUR62013448 Chenopodium quinoa HOM05D006959 ORTHO05D008808 5.9e-54 214.9 220 55.5
Os02g0553500 Oryza sativa ssp. japonica HOM05D006959 ORTHO05D008808 1.3e-53 213.8 214 54.7
PSO170G0856 Papaver somniferum HOM05D006959 ORTHO05D008808 1.3e-53 213.8 226 51.8
MBI03_g13506_MAGBIO Magnolia biondii HOM05D006959 ORTHO05D008808 1.7e-53 213.4 230 55.7
Nitab4.5_0008327g0010 Nicotiana tabacum HOM05D006959 ORTHO05D008808 1.7e-53 213.4 231 51.5
PSO528G0249 Papaver somniferum HOM05D006959 ORTHO05D008808 1.7e-53 213.4 229 52.0
CAN.G46.11 Capsicum annuum HOM05D006959 ORTHO05D008808 5.0e-53 211.8 207 54.6
CARHR070700 Cardamine hirsuta HOM05D006959 ORTHO05D008808 1.1e-52 210.7 207 53.1
HPP92_016131 Vanilla planifolia HOM05D006959 ORTHO05D008808 1.5e-52 210.3 209 53.6
CANSAT64G0796 Cannabis sativa HOM05D006959 ORTHO05D008808 7.3e-52 208.0 211 56.9
CDE06G1932 Ceratophyllum demersum HOM05D006959 ORTHO05D008808 9.5e-52 207.6 214 55.6
AT1G77230 Arabidopsis thaliana HOM05D006959 ORTHO05D008808 1.6e-51 206.8 219 52.1
BcaC08g45484 Brassica carinata HOM05D006959 ORTHO05D008808 2.1e-51 206.5 207 54.6
Zm00001eb181980 Zea mays HOM05D006959 ORTHO05D008808 2.8e-51 206.1 210 52.4
A08p07140 Brassica napus HOM05D006959 ORTHO05D008808 6.2e-51 204.9 207 52.7
BraA08t32726Z Brassica rapa HOM05D006959 ORTHO05D008808 6.2e-51 204.9 207 52.7
Sabra02G0060200 Salix brachista HOM05D006959 ORTHO05D008808 3.1e-50 202.6 279 47.7
Actinidia15201 Actinidia chinensis HOM05D006959 ORTHO05D008808 5.2e-50 201.8 207 54.1
C06p31380 Brassica napus HOM05D006959 ORTHO05D008808 1.2e-49 200.7 207 51.7
BolC6t38274H Brassica oleracea HOM05D006959 ORTHO05D008808 2.0e-49 199.9 207 53.1
CSS0019542 Camellia sinensis var. sinensis HOM05D006959 ORTHO05D008808 1.3e-48 197.2 213 52.6
Lj1g0023549 Lotus japonicus HOM05D006959 ORTHO05D008808 2.2e-48 196.4 208 53.4
EL10Ac1g01371 Beta vulgaris HOM05D006959 ORTHO05D008808 2.9e-48 196.1 253 46.2
Aa31LG4G7230 Aethionema arabicum HOM05D006959 ORTHO05D008808 3.7e-48 195.7 236 50.0
arahy.Tifrunner.gnm1.ann1.84IAJ5 Arachis hypogaea HOM05D006959 ORTHO05D008808 1.6e-46 190.3 126 73.8
Lalb_Chr04g0253591 Lupinus albus HOM05D006959 ORTHO05D008808 3.5e-46 189.1 207 52.7
Hma1.2p1_0159F.1_g070340 Hydrangea macrophylla HOM05D006959 ORTHO05D008808 2.3e-45 186.4 198 54.0
Medtr1g029720 Medicago truncatula HOM05D006959 ORTHO05D008808 2.1e-43 179.9 209 50.2
BcaB02g07099 Brassica carinata HOM05D006959 ORTHO05D008808 4.7e-43 178.7 216 44.9
Glyma.14G156700 Glycine max HOM05D006959 ORTHO05D008808 2.3e-42 176.4 210 48.6
ATR0584G163 Amborella trichopoda HOM05D006959 ORTHO05D008808 3.7e-40 169.1 147 57.1
Solyc04g058200.3 Solanum lycopersicum HOM05D006959 ORTHO05D008808 1.9e-39 166.8 109 71.6
Ca_12642_v3 Cicer arietinum L. HOM05D006959 ORTHO05D008808 1.3e-37 160.6 224 46.9
Dinv27258 Davidia involucrata HOM05D006959 ORTHO05D008808 4.0e-34 149.1 124 66.1
DCAR_028201 Daucus carota HOM05D006959 ORTHO05D008808 2.6e-33 146.4 207 44.0
Psat6g040840 Pisum sativum HOM05D006959 ORTHO05D008808 9.2e-31 137.9 150 53.3
TPR.G879 Trifolium pratense HOM05D006959 ORTHO05D008808 9.6e-28 127.9 79 75.9
Prupe.1G487500 Prunus persica HOM05D006959 ORTHO05D008808 1.2e-27 127.5 216 43.1
RcHm_v2.0_Chr6g0296961 Rosa chinensis HOM05D006959 ORTHO05D008808 8.4e-24 114.8 70 75.7
CSS0009415 Camellia sinensis var. sinensis HOM05D006959 ORTHO05D008808 1.4e-23 114.0 144 48.6
CSS0036249 Camellia sinensis var. sinensis HOM05D006959 ORTHO05D008808 5.4e-23 112.1 138 47.8
SGA_v2.0_scaffold52G18911 Striga asiatica HOM05D006959 ORTHO05D008808 1.2e-22 110.9 132 48.5
Mapoly0050s0106 Marchantia polymorpha HOM05D006959 ORTHO05D008808 4.6e-22 109.0 154 40.3
Sc26g0002850 Simmondsia chinensis HOM05D006959 ORTHO05D008808 1.5e-20 104.0 210 38.6
Cre12.g510034 Chlamydomonas reinhardtii HOM05D006959 ORTHO05D008808 2.6e-17 93.2 138 43.5
SEGI_05118 Sequoiadendron giganteum HOM05D006959 ORTHO05D008808 8.4e-16 88.2 78 50.0
SEGI_04582 Sequoiadendron giganteum HOM05D006959 ORTHO05D008808 5.4e-15 85.5 78 50.0
RcHm_v2.0_Chr6g0296981 Rosa chinensis HOM05D006959 ORTHO05D008808 3.0e-13 79.7 55 67.3
FAN24G1784 Fragaria x ananassa HOM05D006959 ORTHO05D008808 5.3e-10 68.9 47 61.7
Medtr7g059150 Medicago truncatula HOM05D003946 ORTHO05D004485 2.2e-08 63.5 196 28.1
FAN27G2285 Fragaria x ananassa HOM05D006959 ORTHO05D008808 8.4e-08 61.6 107 38.3
TPR.G23301 Trifolium pratense HOM05D003946 ORTHO05D004485 8.4e-08 61.6 178 29.2
Zm00001eb248730 Zea mays HOM05D002462 ORTHO05D002893 8.4e-08 61.6 103 29.1
Os02g0644100 Oryza sativa ssp. japonica HOM05D002462 ORTHO05D002893 1.4e-07 60.8 101 29.7
Lj4A625G10 Lonicera japonica HOM05D005920 ORTHO05D007211 2.4e-07 60.1 148 27.0
Carub.0006s2688 Capsella rubella HOM05D005920 ORTHO05D007211 3.2e-07 59.7 201 23.9
Lalb_Chr07g0193951 Lupinus albus HOM05D003946 ORTHO05D004485 3.2e-07 59.7 183 29.5
Psat3g143400 Pisum sativum HOM05D003946 ORTHO05D004485 4.2e-07 59.3 200 27.0
AL6G42090 Arabidopsis lyrata HOM05D005920 ORTHO05D007211 7.1e-07 58.5 209 23.0
Phvul.008G125199 Phaseolus vulgaris HOM05D003946 ORTHO05D004485 7.1e-07 58.5 163 28.8
THA.LOC104817311 Tarenaya hassleriana HOM05D005920 ORTHO05D007211 7.1e-07 58.5 176 25.0
VMungo1383G2940 Vigna mungo HOM05D003946 ORTHO05D004485 7.1e-07 58.5 163 28.8
CARHR259410 Cardamine hirsuta HOM05D005920 ORTHO05D007211 9.3e-07 58.2 208 25.5
Gohir.A05G234800 Gossypium hirsutum HOM05D005920 ORTHO05D007211 1.2e-06 57.8 154 25.3
arahy.Tifrunner.gnm1.ann1.69CB9U Arachis hypogaea HOM05D003946 ORTHO05D004485 1.6e-06 57.4 162 27.2
BcaB05g23941 Brassica carinata HOM05D005920 ORTHO05D007211 1.6e-06 57.4 145 25.5
BcaC03g16447 Brassica carinata HOM05D005920 ORTHO05D007211 1.6e-06 57.4 208 25.5
Gohir.D05G237100 Gossypium hirsutum HOM05D005920 ORTHO05D007211 1.6e-06 57.4 154 25.3
Sp6g09620 Schrenkiella parvula HOM05D005920 ORTHO05D007211 1.6e-06 57.4 201 25.4
arahy.Tifrunner.gnm1.ann1.5R3BA8 Arachis hypogaea HOM05D003946 ORTHO05D004485 2.1e-06 57.0 129 27.9
arahy.Tifrunner.gnm1.ann1.8RX8VY Arachis hypogaea HOM05D003946 ORTHO05D004485 2.1e-06 57.0 129 27.9
Cfa025863 Carpinus fangiana HOM05D002462 ORTHO05D002893 2.1e-06 57.0 117 23.1
CBR_g52628 Chara braunii HOM05D006959 ORTHO05D008808 2.1e-06 57.0 62 48.4
Gorai.009G245500 Gossypium raimondii HOM05D005920 ORTHO05D007211 2.1e-06 57.0 154 25.3
Lsat_1_v5_gn_6_112921 Lactuca sativa HOM05D005920 ORTHO05D007211 2.1e-06 57.0 167 25.7
MSTRG.1445 Avicennia marina HOM05D005920 ORTHO05D007211 3.5e-06 56.2 167 24.0
BolSC33t60638H Brassica oleracea HOM05D005920 ORTHO05D007211 3.5e-06 56.2 208 23.6
Ciclev10001211m.g Citrus clementina HOM05D005920 ORTHO05D007211 3.5e-06 56.2 162 21.6
Thhalv10028662m.g Eutrema salsugineum HOM05D005920 ORTHO05D007211 3.5e-06 56.2 198 23.7
Lj4g0012280 Lotus japonicus HOM05D003946 ORTHO05D004485 3.5e-06 56.2 175 28.0
Aqoxy6G00210 Aquilegia oxysepala HOM05D005920 ORTHO05D007211 4.6e-06 55.8 167 24.6
A02p26870 Brassica napus HOM05D005920 ORTHO05D007211 4.6e-06 55.8 208 23.1
C02p42670 Brassica napus HOM05D005920 ORTHO05D007211 4.6e-06 55.8 208 23.6
BraA02t07698Z Brassica rapa HOM05D005920 ORTHO05D007211 4.6e-06 55.8 208 23.1
CBR_g6631 Chara braunii HOM05D002462 ORTHO05D002893 4.6e-06 55.8 103 26.2
BcaNung03227 Brassica carinata HOM05D000868 ORTHO05D000711 6.0e-06 55.5 96 35.4
Nitab4.5_0000383g0260 Nicotiana tabacum HOM05D000868 ORTHO05D000711 7.9e-06 55.1 126 30.2
Nitab4.5_0002252g0080 Nicotiana tabacum HOM05D000868 ORTHO05D000711 7.9e-06 55.1 124 30.6


User provided reference genes

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