Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0020250 Sechium edule HOM05D005805 ORTHO05D007226 5.5e-198 694.1 352 100.0
ClCG01G003160 Citrullus lanatus HOM05D005805 ORTHO05D007226 5.5e-166 587.8 394 78.7
MELO3C005626.2 Cucumis melo HOM05D005805 ORTHO05D007226 1.7e-159 566.2 332 85.8
CsaV3_5G003280 Cucumis sativus L. HOM05D005805 ORTHO05D007226 2.6e-139 499.2 281 87.9
Sed0020925 Sechium edule HOM05D005805 ORTHO05D007226 1.7e-138 496.5 283 88.7
CSS0012055 Camellia sinensis var. sinensis HOM05D005805 ORTHO05D007226 2.1e-120 436.4 351 65.2
TAR375G0540 Trochodendron aralioides HOM05D005805 ORTHO05D007226 2.7e-120 436.0 350 64.0
CSS0001301 Camellia sinensis var. sinensis HOM05D005805 ORTHO05D007226 1.1e-118 430.6 353 64.0
GSVIVG01019866001 Vitis vinifera HOM05D005805 ORTHO05D007226 3.3e-118 429.1 350 64.0
TAR629G3121 Trochodendron aralioides HOM05D005805 ORTHO05D007226 4.3e-118 428.7 350 64.3
Ca_06662_v3 Cicer arietinum L. HOM05D005805 ORTHO05D007226 2.4e-116 422.9 351 63.8
Actinidia14511 Actinidia chinensis HOM05D005805 ORTHO05D007226 6.8e-116 421.4 350 63.1
VMungo1215G3124 Vigna mungo HOM05D005805 ORTHO05D007226 8.9e-116 421.0 353 64.0
Dinv39015 Davidia involucrata HOM05D005805 ORTHO05D007226 1.2e-115 420.6 324 66.4
Actinidia02051 Actinidia chinensis HOM05D005805 ORTHO05D007226 2.0e-115 419.9 349 62.5
Hma1.2p1_0371F.1_g138200 Hydrangea macrophylla HOM05D005805 ORTHO05D007226 1.7e-114 416.8 339 62.8
CiPaw.11G141700 Carya illinoinensis HOM05D005805 ORTHO05D007226 2.4e-113 412.9 448 51.8
Glyma.11G026600 Glycine max HOM05D005805 ORTHO05D007226 4.2e-113 412.1 357 62.7
Lalb_Chr16g0379971 Lupinus albus HOM05D005805 ORTHO05D007226 1.6e-112 410.2 351 62.1
Glyma.01G215800 Glycine max HOM05D005805 ORTHO05D007226 3.9e-111 405.6 357 61.9
Sopen08g028610 Solanum pennellii HOM05D005805 ORTHO05D007226 1.5e-110 403.7 355 61.7
Eucgr.D01927 Eucalyptus grandis HOM05D005805 ORTHO05D007226 1.9e-110 403.3 397 56.4
Duzib068G1011 Durio zibethinus HOM05D005805 ORTHO05D007226 8.1e-109 397.9 350 60.6
Nitab4.5_0009882g0030 Nicotiana tabacum HOM05D005805 ORTHO05D007226 8.1e-109 397.9 372 58.9
CAN.G981.40 Capsicum annuum HOM05D005805 ORTHO05D007226 1.1e-108 397.5 358 59.8
Duzib084G0260 Durio zibethinus HOM05D005805 ORTHO05D007226 2.4e-108 396.4 446 51.8
Phvul.002G153800 Phaseolus vulgaris HOM05D005805 ORTHO05D007226 6.9e-108 394.8 324 64.2
Nn1g01331 Nelumbo nucifera HOM05D005805 ORTHO05D007226 1.2e-107 394.0 349 59.0
Lsat_1_v5_gn_6_12941 Lactuca sativa HOM05D005805 ORTHO05D007226 9.9e-107 391.0 352 59.4
Gohir.A03G015238 Gossypium hirsutum HOM05D005805 ORTHO05D007226 4.9e-106 388.7 449 50.6
Duzib205G1286 Durio zibethinus HOM05D005805 ORTHO05D007226 8.4e-106 387.9 440 51.1
QL12p017075 Quercus lobata HOM05D005805 ORTHO05D007226 8.4e-106 387.9 457 51.0
Gohir.D03G155100 Gossypium hirsutum HOM05D005805 ORTHO05D007226 1.1e-105 387.5 458 50.2
Gorai.003G162800 Gossypium raimondii HOM05D005805 ORTHO05D007226 1.1e-105 387.5 458 50.2
Migut.A00918 Erythranthe guttata HOM05D005805 ORTHO05D007226 1.9e-105 386.7 401 54.4
CiPaw.12G099000 Carya illinoinensis HOM05D005805 ORTHO05D007226 3.2e-105 386.0 458 49.6
Lalb_Chr05g0214771 Lupinus albus HOM05D005805 ORTHO05D007226 2.1e-104 383.3 353 60.3
PGSC0003DMG400022755 Solanum tuberosum HOM05D005805 ORTHO05D007226 2.1e-104 383.3 322 62.7
Ciclev10020090m.g Citrus clementina HOM05D005805 ORTHO05D007226 1.0e-103 380.9 467 48.8
vmacro00648 Vaccinium macrocarpon HOM05D005805 ORTHO05D007226 1.0e-103 380.9 338 61.5
Cc08_g13930 Coffea canephora HOM05D005805 ORTHO05D007226 2.3e-103 379.8 351 56.7
Psat2g181520 Pisum sativum HOM05D005805 ORTHO05D007226 6.6e-103 378.3 437 51.0
Nitab4.5_0001714g0200 Nicotiana tabacum HOM05D005805 ORTHO05D007226 1.9e-102 376.7 349 58.2
Oeu031590.1 Olea europaea HOM05D005805 ORTHO05D007226 1.9e-102 376.7 373 56.6
Thecc.03G270600 Theobroma cacao HOM05D005805 ORTHO05D007226 1.9e-102 376.7 438 51.1
Solyc08g080260.4 Solanum lycopersicum HOM05D005805 ORTHO05D007226 3.3e-102 375.9 362 58.6
HanXRQChr02g0048701 Helianthus annuus HOM05D005805 ORTHO05D007226 7.4e-102 374.8 356 58.4
Cfa012095 Carpinus fangiana HOM05D005805 ORTHO05D007226 9.6e-102 374.4 485 47.8
TPR.G6662 Trifolium pratense HOM05D005805 ORTHO05D007226 9.6e-102 374.4 440 50.2
arahy.Tifrunner.gnm1.ann1.8FZ8QS Arachis hypogaea HOM05D005805 ORTHO05D007226 1.3e-101 374.0 419 52.5
Medtr5g010950 Medicago truncatula HOM05D005805 ORTHO05D007226 1.3e-101 374.0 357 58.5
Lj2A197T60 Lonicera japonica HOM05D005805 ORTHO05D007226 8.1e-101 371.3 349 56.7
Potri.001G111100 Populus trichocarpa HOM05D005805 ORTHO05D007226 1.1e-100 370.9 469 48.0
Peaxi162Scf00620g00920 Petunia axillaris HOM05D005805 ORTHO05D007226 2.4e-100 369.8 382 53.9
MD06G1071900 Malus domestica HOM05D005805 ORTHO05D007226 9.0e-100 367.9 507 45.2
Prupe.5G089600 Prunus persica HOM05D005805 ORTHO05D007226 7.6e-99 364.8 520 45.4
Lj2g0007037 Lotus japonicus HOM05D005805 ORTHO05D007226 9.9e-99 364.4 481 46.4
Gorai.004G207600 Gossypium raimondii HOM05D005805 ORTHO05D007226 1.3e-98 364.0 405 51.1
MD04G1068600 Malus domestica HOM05D005805 ORTHO05D007226 2.2e-98 363.2 507 45.0
Potri.003G120900 Populus trichocarpa HOM05D005805 ORTHO05D007226 3.8e-98 362.5 480 46.7
Aqoxy7G00467 Aquilegia oxysepala HOM05D005805 ORTHO05D007226 7.1e-97 358.2 309 60.5
CANSAT21G1670 Cannabis sativa HOM05D005805 ORTHO05D007226 2.3e-95 353.2 530 43.6
Sabra01G0084700 Salix brachista HOM05D005805 ORTHO05D007226 3.0e-95 352.8 496 44.2
TWI81G0996 Tripterygium wilfordii HOM05D005805 ORTHO05D007226 5.1e-95 352.1 469 46.1
FAN13G0947 Fragaria x ananassa HOM05D005805 ORTHO05D007226 2.5e-94 349.7 487 44.6
FAN04G0223 Fragaria x ananassa HOM05D005805 ORTHO05D007226 3.3e-94 349.4 496 44.4
FvH4_5g01420 Fragaria vesca HOM05D005805 ORTHO05D007226 4.3e-94 349.0 495 44.2
RcHm_v2.0_Chr7g0199441 Rosa chinensis HOM05D005805 ORTHO05D007226 9.6e-94 347.8 516 42.4
FAN08G1094 Fragaria x ananassa HOM05D005805 ORTHO05D007226 2.1e-93 346.7 505 43.4
PGR031G2899 Punica granatum HOM05D005805 ORTHO05D007226 2.8e-93 346.3 442 48.2
FAN18G3929 Fragaria x ananassa HOM05D005805 ORTHO05D007226 3.7e-93 345.9 495 44.0
Dinv37696 Davidia involucrata HOM05D005805 ORTHO05D007226 1.7e-90 337.0 280 62.5
Gohir.A08G178400 Gossypium hirsutum HOM05D005805 ORTHO05D007226 2.2e-90 336.7 478 45.2
THA.LOC104806368 Tarenaya hassleriana HOM05D005805 ORTHO05D007226 2.2e-90 336.7 423 48.7
THA.LOC104814292 Tarenaya hassleriana HOM05D005805 ORTHO05D007226 6.5e-90 335.1 413 48.4
Manes.01G068001 Manihot esculenta HOM05D005805 ORTHO05D007226 2.5e-89 333.2 426 47.7
HanXRQChr07g0188541 Helianthus annuus HOM05D005805 ORTHO05D007226 3.2e-89 332.8 336 55.1
MBI04_g40844_MAGBIO Magnolia biondii HOM05D005805 ORTHO05D007226 1.2e-88 330.9 350 54.3
TWI60G0251 Tripterygium wilfordii HOM05D005805 ORTHO05D007226 3.5e-88 329.3 487 42.1
ECA233G3280 Erigeron canadensis HOM05D005805 ORTHO05D007226 5.1e-87 325.5 440 44.5
Sc01g0008800 Simmondsia chinensis HOM05D005805 ORTHO05D007226 6.3e-85 318.5 448 45.5
A02p25990 Brassica napus HOM05D005805 ORTHO05D007226 2.4e-84 316.6 384 49.5
BraA02t07597Z Brassica rapa HOM05D005805 ORTHO05D007226 2.4e-84 316.6 384 49.5
BolC9t56310H Brassica oleracea HOM05D005805 ORTHO05D007226 1.5e-83 313.9 409 48.2
arahy.Tifrunner.gnm1.ann1.J6ALFQ Arachis hypogaea HOM05D005805 ORTHO05D007226 2.0e-83 313.5 485 42.9
Oeu001898.3 Olea europaea HOM05D005805 ORTHO05D007226 4.5e-83 312.4 357 52.1
BraA09t38298Z Brassica rapa HOM05D005805 ORTHO05D007226 7.6e-83 311.6 409 46.9
Aa31LG9G10640 Aethionema arabicum HOM05D005805 ORTHO05D007226 6.5e-82 308.5 408 47.1
Thhalv10028709m.g Eutrema salsugineum HOM05D005805 ORTHO05D007226 1.1e-81 307.8 412 45.9
C09p34650 Brassica napus HOM05D005805 ORTHO05D007226 5.5e-81 305.4 428 46.5
Rhsim08G0109800 Rhododendron simsii HOM05D000003 ORTHO05D000004 5.5e-81 305.4 337 52.5
Haze_08957 Corylus avellana HOM05D005805 ORTHO05D007226 2.7e-80 303.1 498 42.4
unitig_8.g3899 Utricularia gibba HOM05D005805 ORTHO05D007226 1.8e-79 300.4 355 49.0
A09p27320 Brassica napus HOM05D005805 ORTHO05D007226 3.0e-79 299.7 428 45.3
BcaB05g23807 Brassica carinata HOM05D005805 ORTHO05D007226 1.5e-78 297.4 415 43.4
AL6G46500 Arabidopsis lyrata HOM05D005805 ORTHO05D007226 1.6e-77 293.9 439 44.6
CARHR254520 Cardamine hirsuta HOM05D005805 ORTHO05D007226 4.1e-76 289.3 410 45.9
HPP92_020989 Vanilla planifolia HOM05D005805 ORTHO05D007226 1.5e-75 287.3 426 42.3
Carub.0006s3090 Capsella rubella HOM05D005805 ORTHO05D007226 2.6e-75 286.6 441 43.1
EL10Ac5g12722 Beta vulgaris HOM05D005805 ORTHO05D007226 6.5e-74 282.0 460 41.3
ATR0757G009 Amborella trichopoda HOM05D005805 ORTHO05D007226 2.5e-73 280.0 311 51.8
Sp6g05660 Schrenkiella parvula HOM05D005805 ORTHO05D007226 1.6e-72 277.3 399 44.4
AUR62010661 Chenopodium quinoa HOM05D005805 ORTHO05D007226 6.1e-72 275.4 450 41.3
AUR62017300 Chenopodium quinoa HOM05D005805 ORTHO05D007226 3.9e-71 272.7 451 41.7
AT4G11790 Arabidopsis thaliana HOM05D005805 ORTHO05D007226 5.1e-71 272.3 457 40.7
PSO478G0076 Papaver somniferum HOM05D005805 ORTHO05D007226 1.1e-68 264.6 583 33.8
Ah.12g057730 Amaranthus hybridus HOM05D005805 ORTHO05D007226 2.4e-68 263.5 477 38.8
Os03g0667700 Oryza sativa ssp. japonica HOM05D005805 ORTHO05D007226 2.6e-67 260.0 375 43.7
Manes.02G028100 Manihot esculenta HOM05D005805 ORTHO05D007226 5.9e-67 258.8 378 45.0
Zm00001eb073520 Zea mays HOM05D005805 ORTHO05D007226 1.7e-66 257.3 452 40.0
PSO782G3262 Papaver somniferum HOM05D005805 ORTHO05D007226 5.0e-66 255.8 587 32.9
Hund28361 Selenicereus undatus HOM05D005805 ORTHO05D007226 5.0e-66 255.8 500 36.0
Hund28365 Selenicereus undatus HOM05D005805 ORTHO05D007226 5.0e-66 255.8 500 36.0
BcaC03g16328 Brassica carinata HOM05D005805 ORTHO05D007226 6.5e-66 255.4 320 47.8
SalBow6G0943 Salvia bowleyana HOM05D005805 ORTHO05D007226 1.4e-65 254.2 345 45.5
CDE11G0359 Ceratophyllum demersum HOM05D005805 ORTHO05D007226 2.1e-64 250.4 498 36.1
BcaB01g01678 Brassica carinata HOM05D005805 ORTHO05D007226 1.7e-61 240.7 367 42.2
C02p41470 Brassica napus HOM05D005805 ORTHO05D007226 4.2e-57 226.1 324 44.4
COL.COLO4_05276 Corchorus olitorius HOM05D005805 ORTHO05D007226 1.6e-56 224.2 141 80.1
Cpa.g.sc29.9 Carica papaya HOM05D005805 ORTHO05D007226 3.7e-53 213.0 367 40.6
TAR374G1484 Trochodendron aralioides HOM05D005805 ORTHO05D007226 4.1e-52 209.5 147 72.1
Gohir.D08G196900 Gossypium hirsutum HOM05D005805 ORTHO05D007226 1.6e-51 207.6 149 69.8
vmacro10803 Vaccinium macrocarpon HOM05D005805 ORTHO05D007226 1.9e-49 200.7 315 43.5
Atru.chr9.1535 Acer truncatum HOM05D005805 ORTHO05D007226 3.1e-44 183.3 211 51.7
Ah.02g116420 Amaranthus hybridus HOM05D005805 ORTHO05D007226 4.1e-44 183.0 446 34.1
BolC2t10164H Brassica oleracea HOM05D005805 ORTHO05D007226 2.3e-34 150.6 112 67.0
DCAR_006764 Daucus carota HOM05D005805 ORTHO05D007226 1.2e-30 138.3 164 48.8
AagrBONN_evm.TU.Sc2ySwM_344.4489 Anthoceros agrestis HOM05D005805 ORTHO05D007226 1.3e-29 134.8 363 28.9
COL.COLO4_05274 Corchorus olitorius HOM05D005805 ORTHO05D007226 7.3e-25 119.0 74 75.7
Hma1.2p1_0002F.1_g002590 Hydrangea macrophylla HOM05D005805 ORTHO05D007226 3.4e-22 110.2 119 52.9
SGA_v2.0_scaffold60G20821 Striga asiatica HOM05D011763 ORTHO05D014257 5.0e-18 96.3 94 54.3
SGA_v2.0_scaffold60G21020 Striga asiatica HOM05D011763 ORTHO05D014257 1.2e-14 85.1 84 52.4
CBR_g49019 Chara braunii HOM05D005805 ORTHO05D007226 1.7e-13 81.3 67 50.7
PRCOL_00001099 Prasinoderma coloniale HOM05D005805 ORTHO05D007226 5.6e-09 66.2 136 30.9
MCO13G284 Micromonas commoda HOM05D005805 ORTHO05D007226 2.8e-08 63.9 351 23.6


User provided reference genes

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