Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0020226 Sechium edule HOM05D006250 ORTHO05D007107 3.2e-139 499.2 440 100.0
MELO3C002989.2 Cucumis melo HOM05D006250 ORTHO05D007107 9.6e-83 311.6 218 76.1
ClCG09G022110 Citrullus lanatus HOM05D006250 ORTHO05D007107 2.6e-80 303.5 250 68.4
CsaV3_5G025030 Cucumis sativus L. HOM05D006250 ORTHO05D007107 1.3e-79 301.2 218 74.3
Dinv31115 Davidia involucrata HOM05D006250 ORTHO05D007107 1.0e-52 211.8 222 56.8
Prupe.1G260300 Prunus persica HOM05D006250 ORTHO05D007107 3.9e-52 209.9 221 56.1
QL03p066863 Quercus lobata HOM05D006250 ORTHO05D007107 5.1e-52 209.5 223 56.1
Gohir.A05G319200 Gossypium hirsutum HOM05D006250 ORTHO05D007107 2.5e-51 207.2 214 56.1
MD16G1085800 Malus domestica HOM05D006250 ORTHO05D007107 2.5e-51 207.2 210 56.7
Haze_12133 Corylus avellana HOM05D006250 ORTHO05D007107 3.3e-51 206.8 226 54.0
CiPaw.05G146100 Carya illinoinensis HOM05D006250 ORTHO05D007107 9.6e-51 205.3 226 54.9
MD13G1086400 Malus domestica HOM05D006250 ORTHO05D007107 1.6e-50 204.5 213 55.9
Eucgr.B03367 Eucalyptus grandis HOM05D006250 ORTHO05D007107 2.1e-50 204.1 219 55.3
Hma1.2p1_1049F.1_g251780 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 1.8e-49 201.1 214 55.1
Hma1.2p1_2649F.1_g326135 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 1.8e-49 201.1 214 55.1
Aa31LG2G10230 Aethionema arabicum HOM05D006250 ORTHO05D007107 4.1e-49 199.9 422 57.1
COL.COLO4_19523 Corchorus olitorius HOM05D006250 ORTHO05D007107 9.0e-49 198.7 212 53.8
Thhalv10007114m.g Eutrema salsugineum HOM05D006250 ORTHO05D007107 1.5e-48 198.0 218 56.0
Ciclev10031015m.g Citrus clementina HOM05D006250 ORTHO05D007107 2.6e-48 197.2 210 54.8
Manes.05G091350 Manihot esculenta HOM05D006250 ORTHO05D007107 4.5e-48 196.4 213 54.5
TAR629G0559 Trochodendron aralioides HOM05D006250 ORTHO05D007107 4.5e-48 196.4 222 54.5
AL1G21310 Arabidopsis lyrata HOM05D006250 ORTHO05D007107 5.8e-48 196.1 215 55.3
Gohir.D05G321400 Gossypium hirsutum HOM05D006250 ORTHO05D007107 1.7e-47 194.5 214 53.7
Gorai.009G344900 Gossypium raimondii HOM05D006250 ORTHO05D007107 1.7e-47 194.5 214 53.7
Thecc.02G242000 Theobroma cacao HOM05D006250 ORTHO05D007107 1.7e-47 194.5 213 54.9
TAR371G0500 Trochodendron aralioides HOM05D006250 ORTHO05D007107 2.2e-47 194.1 218 55.0
MSTRG.625 Avicennia marina HOM05D006250 ORTHO05D007107 2.9e-47 193.7 225 50.2
Lsat_1_v5_gn_3_49600 Lactuca sativa HOM05D006250 ORTHO05D007107 3.8e-47 193.4 210 51.4
CARHR010650 Cardamine hirsuta HOM05D006250 ORTHO05D007107 1.1e-46 191.8 215 54.4
Carub.0001s0994 Capsella rubella HOM05D006250 ORTHO05D007107 1.4e-46 191.4 218 55.0
Sopen05g002190 Solanum pennellii HOM05D000912 ORTHO05D001232 1.4e-46 191.4 226 50.4
AT1G10510 Arabidopsis thaliana HOM05D006250 ORTHO05D007107 5.5e-46 189.5 215 53.5
ECA246G3811 Erigeron canadensis HOM05D006250 ORTHO05D007107 5.5e-46 189.5 168 60.1
RcHm_v2.0_Chr4g0444691 Rosa chinensis HOM05D006250 ORTHO05D007107 7.2e-46 189.1 219 54.8
Sp1g09140 Schrenkiella parvula HOM05D006250 ORTHO05D007107 7.2e-46 189.1 215 55.3
PGSC0003DMG400015603 Solanum tuberosum HOM05D006250 ORTHO05D007107 9.3e-46 188.7 220 50.0
Migut.L01451 Erythranthe guttata HOM05D006250 ORTHO05D007107 1.6e-45 188.0 225 51.6
Potri.008G193700 Populus trichocarpa HOM05D006250 ORTHO05D007107 1.6e-45 188.0 212 53.3
Sabra08G0147200 Salix brachista HOM05D006250 ORTHO05D007107 2.1e-45 187.6 214 51.4
Solyc05g006170.4 Solanum lycopersicum HOM05D006250 ORTHO05D007107 2.1e-45 187.6 226 50.0
CAN.G1160.10 Capsicum annuum HOM05D006250 ORTHO05D007107 2.7e-45 187.2 210 50.5
HanXRQChr10g0288221 Helianthus annuus HOM05D006250 ORTHO05D007107 3.5e-45 186.8 170 57.6
C08p13750 Brassica napus HOM05D006250 ORTHO05D007107 4.6e-45 186.4 214 55.6
THA.LOC104816735 Tarenaya hassleriana HOM05D006250 ORTHO05D007107 6.1e-45 186.0 216 53.7
BolC8t49010H Brassica oleracea HOM05D006250 ORTHO05D007107 7.9e-45 185.7 214 55.6
GSVIVG01020179001 Vitis vinifera HOM05D006250 ORTHO05D007107 7.9e-45 185.7 237 47.3
FAN22G2376 Fragaria x ananassa HOM05D006250 ORTHO05D007107 1.8e-44 184.5 215 53.5
Atru.chr11.1955 Acer truncatum HOM05D006250 ORTHO05D007107 5.1e-44 183.0 216 50.9
CANSAT01G1928 Cannabis sativa HOM05D006250 ORTHO05D007107 5.1e-44 183.0 221 52.9
FvH4_4g35070 Fragaria vesca HOM05D006250 ORTHO05D007107 6.7e-44 182.6 215 52.6
FAN12G0989 Fragaria x ananassa HOM05D006250 ORTHO05D007107 6.7e-44 182.6 215 52.6
BcaC07g38569 Brassica carinata HOM05D006250 ORTHO05D007107 4.3e-43 179.9 214 56.1
BcaC07g38607 Brassica carinata HOM05D006250 ORTHO05D007107 7.4e-43 179.1 219 51.6
A08p33910 Brassica napus HOM05D006250 ORTHO05D007107 9.7e-43 178.7 216 54.6
BraA08t35306Z Brassica rapa HOM05D006250 ORTHO05D007107 9.7e-43 178.7 216 54.6
BcaC05g24932 Brassica carinata HOM05D006250 ORTHO05D007107 1.6e-42 177.9 213 53.1
Glyma.02G029800 Glycine max HOM05D006250 ORTHO05D007107 1.6e-42 177.9 216 47.2
A06p07280 Brassica napus HOM05D006250 ORTHO05D007107 2.2e-42 177.6 213 54.5
BraA06t23934Z Brassica rapa HOM05D006250 ORTHO05D007107 2.2e-42 177.6 213 54.5
TWI18G0037 Tripterygium wilfordii HOM05D006250 ORTHO05D007107 6.3e-42 176.0 170 54.7
Nn3g16985 Nelumbo nucifera HOM05D006250 ORTHO05D007107 8.2e-42 175.6 223 50.7
C05p08800 Brassica napus HOM05D006250 ORTHO05D007107 1.4e-41 174.9 220 52.3
BolC5t29626H Brassica oleracea HOM05D006250 ORTHO05D007107 1.4e-41 174.9 220 52.3
BcaC05g24872 Brassica carinata HOM05D006250 ORTHO05D007107 1.8e-41 174.5 220 52.3
Medtr5g035590 Medicago truncatula HOM05D006250 ORTHO05D007107 1.8e-41 174.5 221 47.1
Duzib251G0023 Durio zibethinus HOM05D006250 ORTHO05D007107 2.4e-41 174.1 214 50.0
FAN17G0914 Fragaria x ananassa HOM05D006250 ORTHO05D007107 3.1e-41 173.7 226 50.4
Glyma.01G036200 Glycine max HOM05D006250 ORTHO05D007107 3.1e-41 173.7 213 46.0
AUR62039411 Chenopodium quinoa HOM05D006250 ORTHO05D007107 5.3e-41 172.9 213 49.3
SalBow2G3220 Salvia bowleyana HOM05D006250 ORTHO05D007107 5.3e-41 172.9 222 47.3
AUR62026573 Chenopodium quinoa HOM05D006250 ORTHO05D007107 6.9e-41 172.6 213 49.3
DCAR_026556 Daucus carota HOM05D006250 ORTHO05D007107 1.5e-40 171.4 156 57.7
FAN07G1033 Fragaria x ananassa HOM05D006250 ORTHO05D007107 5.9e-40 169.5 234 49.6
Ca_18091_v3 Cicer arietinum L. HOM05D006250 ORTHO05D007107 1.7e-39 167.9 213 44.6
EL10Ac6g13760 Beta vulgaris HOM05D006250 ORTHO05D007107 2.2e-39 167.5 172 55.2
Sc11g0001380 Simmondsia chinensis HOM05D006250 ORTHO05D007107 2.2e-39 167.5 214 49.5
Phvul.002G075400 Phaseolus vulgaris HOM05D006250 ORTHO05D007107 5.0e-39 166.4 220 47.3
Hund05952 Selenicereus undatus HOM05D006250 ORTHO05D007107 5.0e-39 166.4 216 46.3
Cc11_g14200 Coffea canephora HOM05D006250 ORTHO05D007107 6.5e-39 166.0 219 48.9
Lalb_Chr09g0326521 Lupinus albus HOM05D006250 ORTHO05D007107 1.4e-38 164.9 212 46.2
arahy.Tifrunner.gnm1.ann1.ST0DQ2 Arachis hypogaea HOM05D006250 ORTHO05D007107 2.5e-38 164.1 219 45.7
Actinidia15003 Actinidia chinensis HOM05D006250 ORTHO05D007107 3.2e-38 163.7 188 51.1
arahy.Tifrunner.gnm1.ann1.11GRU6 Arachis hypogaea HOM05D006250 ORTHO05D007107 3.2e-38 163.7 219 45.7
Lj2g0015976 Lotus japonicus HOM05D006250 ORTHO05D007107 7.2e-38 162.5 218 45.9
VMungo1215G1343 Vigna mungo HOM05D006250 ORTHO05D007107 1.2e-37 161.8 166 54.2
Aqoxy3G03090 Aquilegia oxysepala HOM05D006250 ORTHO05D007107 3.6e-37 160.2 222 46.8
VMungo0720G1586 Vigna mungo HOM05D006250 ORTHO05D007107 3.6e-37 160.2 217 47.5
CDE04G2141 Ceratophyllum demersum HOM05D006250 ORTHO05D007107 1.8e-36 157.9 169 52.7
unitig_749.g13267 Utricularia gibba HOM05D006250 ORTHO05D007107 2.3e-36 157.5 157 56.1
Psat4g140960 Pisum sativum HOM05D006250 ORTHO05D007107 3.0e-36 157.1 221 44.3
Nitab4.5_0005722g0060 Nicotiana tabacum HOM05D006250 ORTHO05D007107 6.7e-36 156.0 223 43.0
Ah.03g132320 Amaranthus hybridus HOM05D006250 ORTHO05D007107 8.8e-36 155.6 195 48.7
MBI18_g16987_MAGBIO Magnolia biondii HOM05D006250 ORTHO05D007107 1.5e-35 154.8 148 58.1
Lj6A800T42 Lonicera japonica HOM05D006250 ORTHO05D007107 4.3e-35 153.3 231 44.2
TPR.G13515 Trifolium pratense HOM05D006250 ORTHO05D007107 2.8e-34 150.6 165 47.9
PSO063G2741 Papaver somniferum HOM05D006250 ORTHO05D007107 6.3e-34 149.4 228 44.7
PSO832G4030 Papaver somniferum HOM05D006250 ORTHO05D007107 8.2e-34 149.1 228 45.2
Hma1.2p1_1049F.1_g251790 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 6.9e-33 146.0 182 50.0
Hma1.2p1_2649F.1_g326133 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 6.9e-33 146.0 182 50.0
CSS0049978 Camellia sinensis var. sinensis HOM05D006250 ORTHO05D007107 4.2e-30 136.7 218 44.5
SGA_v2.0_scaffold8G04258 Striga asiatica HOM05D006250 ORTHO05D007107 2.1e-29 134.4 267 37.8
Lsat_1_v5_gn_4_95161 Lactuca sativa HOM05D006250 ORTHO05D007107 7.9e-29 132.5 105 61.9
ATR0829G105 Amborella trichopoda HOM05D006250 ORTHO05D007107 1.0e-28 132.1 106 59.4
PGR102G1255 Punica granatum HOM05D006250 ORTHO05D007107 2.6e-27 127.5 95 66.3
Dinv24907 Davidia involucrata HOM05D006250 ORTHO05D007107 4.8e-26 123.2 74 78.4
Zm00001eb371900 Zea mays HOM05D006250 ORTHO05D007107 1.7e-23 114.8 150 44.7
Os06g0237502 Oryza sativa ssp. japonica HOM05D006250 ORTHO05D007107 5.0e-23 113.2 149 43.6
vmacro16283 Vaccinium macrocarpon HOM05D006250 ORTHO05D007107 7.2e-22 109.4 105 55.2
HPP92_017346 Vanilla planifolia HOM05D006250 ORTHO05D007107 6.7e-20 102.8 183 36.6
Nitab4.5_0000257g0160 Nicotiana tabacum HOM05D006250 ORTHO05D007107 5.7e-19 99.8 191 36.1
Rhsim12G0124700 Rhododendron simsii HOM05D006250 ORTHO05D007107 8.2e-18 95.9 164 40.2
Peaxi162Scf00421g00828 Petunia axillaris HOM05D006250 ORTHO05D007107 3.5e-16 90.5 112 48.2
SEGI_23986 Sequoiadendron giganteum HOM05D006250 ORTHO05D007107 2.2e-15 87.8 153 38.6
AagrBONN_evm.TU.Sc2ySwM_344.3920 Anthoceros agrestis HOM05D006250 ORTHO05D007107 1.6e-13 81.6 166 38.0
DCAR_026558 Daucus carota HOM05D006250 ORTHO05D007107 1.4e-12 78.6 115 41.7
Mapoly0090s0039 Marchantia polymorpha HOM05D006250 ORTHO05D007107 2.4e-09 67.8 130 34.6
SMO116G0024 Selaginella moellendorffii HOM05D006250 ORTHO05D007107 3.1e-09 67.4 63 47.6
TAR629G0016 Trochodendron aralioides HOM05D006250 ORTHO05D007107 1.3e-07 62.0 34 82.4
vmacro16284 Vaccinium macrocarpon HOM05D006250 ORTHO05D007107 5.0e-07 60.1 170 32.4
Lsat_1_v5_gn_4_84060 Lactuca sativa HOM05D006250 ORTHO05D007107 8.5e-07 59.3 42 64.3
Pp3c14_24560 Physcomitrium patens HOM05D006250 ORTHO05D007107 8.5e-07 59.3 156 30.8
Pp3c14_24566 Physcomitrium patens HOM05D006250 ORTHO05D007107 8.5e-07 59.3 156 30.8
Hma1.2p1_2649F.1_g326137 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 1.5e-06 58.5 39 66.7


User provided reference genes

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