Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0020204 Sechium edule HOM05D005184 ORTHO05D006222 2.4e-69 265.4 135 100.0
CsaV3_5G031800 Cucumis sativus L. HOM05D005184 ORTHO05D006222 4.1e-53 211.5 131 85.5
ClCG05G025100 Citrullus lanatus HOM05D005184 ORTHO05D006222 9.2e-53 210.3 131 84.7
MELO3C012019.2 Cucumis melo HOM05D005184 ORTHO05D006222 8.1e-49 197.2 111 90.1
Nn4g22873 Nelumbo nucifera HOM05D005184 ORTHO05D006222 3.1e-48 195.3 123 79.7
Manes.01G197300 Manihot esculenta HOM05D005184 ORTHO05D006222 8.9e-48 193.7 124 77.4
PGR119G0379 Punica granatum HOM05D005184 ORTHO05D006222 5.8e-47 191.0 124 76.6
Cfa009129 Carpinus fangiana HOM05D005184 ORTHO05D006222 1.3e-46 189.9 131 77.1
CANSAT01G1514 Cannabis sativa HOM05D005184 ORTHO05D006222 2.2e-46 189.1 121 80.2
Potri.010G095601 Populus trichocarpa HOM05D005184 ORTHO05D006222 1.1e-45 186.8 131 71.0
TAR374G1061 Trochodendron aralioides HOM05D005184 ORTHO05D006222 1.4e-45 186.4 121 76.0
VMungo0251G1371 Vigna mungo HOM05D005184 ORTHO05D006222 3.2e-45 185.3 129 72.9
Atru.chr11.1971 Acer truncatum HOM05D005184 ORTHO05D006222 9.2e-45 183.7 124 75.8
CiPaw.05G149300 Carya illinoinensis HOM05D005184 ORTHO05D006222 1.2e-44 183.3 124 75.8
PSO478G1620 Papaver somniferum HOM05D005184 ORTHO05D006222 1.2e-44 183.3 131 71.0
Potri.008G146200 Populus trichocarpa HOM05D005184 ORTHO05D006222 1.2e-44 183.3 136 68.4
Lsat_1_v5_gn_4_6340 Lactuca sativa HOM05D005184 ORTHO05D006222 3.5e-44 181.8 133 70.7
RcHm_v2.0_Chr5g0030111 Rosa chinensis HOM05D005184 ORTHO05D006222 3.5e-44 181.8 131 72.5
FvH4_4g34930 Fragaria vesca HOM05D005184 ORTHO05D006222 4.6e-44 181.4 126 73.0
Duzib268G0446 Durio zibethinus HOM05D005184 ORTHO05D006222 1.0e-43 180.3 121 75.2
Thecc.02G243600 Theobroma cacao HOM05D005184 ORTHO05D006222 1.0e-43 180.3 121 75.2
HanXRQChr04g0103681 Helianthus annuus HOM05D005184 ORTHO05D006222 1.3e-43 179.9 131 71.0
Ca_22770_v3 Cicer arietinum L. HOM05D005184 ORTHO05D006222 2.3e-43 179.1 131 68.7
PSO017G3562 Papaver somniferum HOM05D005184 ORTHO05D006222 2.3e-43 179.1 131 69.5
RcHm_v2.0_Chr3g0467191 Rosa chinensis HOM05D005184 ORTHO05D006222 2.3e-43 179.1 130 73.8
Medtr8g063230 Medicago truncatula HOM05D005184 ORTHO05D006222 3.0e-43 178.7 127 70.1
Phvul.003G054400 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 3.9e-43 178.3 131 71.0
Sabra10G0068200 Salix brachista HOM05D005184 ORTHO05D006222 5.1e-43 177.9 135 68.9
COL.COLO4_19542 Corchorus olitorius HOM05D005184 ORTHO05D006222 8.6e-43 177.2 121 73.6
Glyma.18G133800 Glycine max HOM05D005184 ORTHO05D006222 8.6e-43 177.2 119 72.3
RcHm_v2.0_Chr7g0224821 Rosa chinensis HOM05D005184 ORTHO05D006222 8.6e-43 177.2 131 71.8
Eucgr.B02549 Eucalyptus grandis HOM05D005184 ORTHO05D006222 1.1e-42 176.8 119 73.9
Glyma.08G290400 Glycine max HOM05D005184 ORTHO05D006222 1.9e-42 176.0 132 66.7
Actinidia27771 Actinidia chinensis HOM05D005184 ORTHO05D006222 3.3e-42 175.3 122 75.4
Gohir.D01G129700 Gossypium hirsutum HOM05D005184 ORTHO05D006222 3.3e-42 175.3 121 72.7
arahy.Tifrunner.gnm1.ann1.G4BVC6 Arachis hypogaea HOM05D005184 ORTHO05D006222 4.3e-42 174.9 133 69.2
Gorai.002G161300 Gossypium raimondii HOM05D005184 ORTHO05D006222 5.6e-42 174.5 120 73.3
Gohir.A01G139200 Gossypium hirsutum HOM05D005184 ORTHO05D006222 1.2e-41 173.3 121 71.9
TPR.G32980 Trifolium pratense HOM05D005184 ORTHO05D006222 1.2e-41 173.3 121 71.9
arahy.Tifrunner.gnm1.ann1.GIV1JF Arachis hypogaea HOM05D005184 ORTHO05D006222 1.6e-41 172.9 134 67.9
Lalb_Chr11g0071121 Lupinus albus HOM05D005184 ORTHO05D006222 2.1e-41 172.6 129 66.7
Cpa.g.sc5.359 Carica papaya HOM05D005184 ORTHO05D006222 2.8e-41 172.2 121 73.6
Aqoxy3G03072 Aquilegia oxysepala HOM05D005184 ORTHO05D006222 3.6e-41 171.8 121 70.2
Lj4g0016473 Lotus japonicus HOM05D005184 ORTHO05D006222 6.2e-41 171.0 119 70.6
MSTRG.614 Avicennia marina HOM05D005184 ORTHO05D006222 2.3e-40 169.1 133 68.4
MD16G1088100 Malus domestica HOM05D005184 ORTHO05D006222 2.3e-40 169.1 131 69.5
Phvul.003G054101 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 6.8e-40 167.5 126 69.0
Migut.E00145 Erythranthe guttata HOM05D005184 ORTHO05D006222 8.9e-40 167.2 122 68.9
Oeu040755.2 Olea europaea HOM05D005184 ORTHO05D006222 8.9e-40 167.2 122 68.9
ECA234G0428 Erigeron canadensis HOM05D005184 ORTHO05D003386 1.2e-39 166.8 123 68.3
Ciclev10032867m.g Citrus clementina HOM05D005184 ORTHO05D006222 1.5e-39 166.4 126 65.9
Cc11_g14330 Coffea canephora HOM05D005184 ORTHO05D006222 2.6e-39 165.6 128 68.8
CDE04G2481 Ceratophyllum demersum HOM05D006272 ORTHO05D006222 5.8e-39 164.5 137 65.7
TWI18G1303 Tripterygium wilfordii HOM05D005184 ORTHO05D006222 7.6e-39 164.1 121 67.8
Rhsim12G0048500 Rhododendron simsii HOM05D005184 ORTHO05D006222 1.3e-38 163.3 139 66.2
Duzib248G0500 Durio zibethinus HOM05D005184 ORTHO05D006222 3.8e-38 161.8 120 70.0
MD13G1087800 Malus domestica HOM05D005184 ORTHO05D006222 4.9e-38 161.4 141 62.4
Mapoly0065s0085 Marchantia polymorpha HOM05D005184 ORTHO05D006222 8.4e-38 160.6 122 64.8
CSS0049337 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.4e-37 159.8 121 72.7
Oeu039485.1 Olea europaea HOM05D005184 ORTHO05D006222 1.4e-37 159.8 122 66.4
RcHm_v2.0_Chr1g0347741 Rosa chinensis HOM05D005184 ORTHO05D006222 1.4e-37 159.8 131 65.6
Os02g0741900 Oryza sativa ssp. japonica HOM05D005184 ORTHO05D006222 4.1e-37 158.3 125 61.6
Zm00001eb194690 Zea mays HOM05D005184 ORTHO05D006222 4.1e-37 158.3 123 62.6
CSS0009826 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 7.1e-37 157.5 121 71.9
Psat4g125480 Pisum sativum HOM05D005184 ORTHO05D006222 9.2e-37 157.1 133 62.4
Zm00001eb254250 Zea mays HOM05D005184 ORTHO05D006222 1.2e-36 156.8 123 61.8
CSS0002866 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.3e-35 153.3 121 70.2
unitig_749.g13268 Utricularia gibba HOM05D005184 ORTHO05D006222 1.7e-35 152.9 157 53.5
Haze_12160 Corylus avellana HOM05D005184 ORTHO05D006222 3.9e-35 151.8 131 64.9
CSS0034024 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 5.1e-35 151.4 120 70.0
TAR622G1169 Trochodendron aralioides HOM05D005184 ORTHO05D006222 5.1e-35 151.4 131 64.1
Prupe.1G258500 Prunus persica HOM05D005184 ORTHO05D006222 5.6e-34 147.9 130 63.8
Sc04g0008930 Simmondsia chinensis HOM05D005184 ORTHO05D006222 7.3e-34 147.5 121 64.5
Medtr8g461280 Medicago truncatula HOM05D005184 ORTHO05D006222 2.1e-33 146.0 117 64.1
CBR_g30806 Chara braunii HOM05D005184 ORTHO05D006222 2.8e-33 145.6 126 57.9
CBR_g30798 Chara braunii HOM05D005184 ORTHO05D006222 4.7e-33 144.8 126 57.9
RcHm_v2.0_Chr2g0143691 Rosa chinensis HOM05D005184 ORTHO05D006222 4.7e-33 144.8 131 61.8
CSS0033197 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.8e-32 142.9 124 64.5
FAN12G2936 Fragaria x ananassa HOM05D005184 ORTHO05D006222 1.8e-32 142.9 126 61.9
FAN17G0007 Fragaria x ananassa HOM05D005184 ORTHO05D006222 1.8e-32 142.9 126 62.7
FAN22G1244 Fragaria x ananassa HOM05D005184 ORTHO05D006222 1.8e-32 142.9 126 62.7
FAN07G0314 Fragaria x ananassa HOM05D005184 ORTHO05D006222 2.4e-32 142.5 126 61.9
CSS0000441 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 8.9e-32 140.6 121 64.5
AagrBONN_evm.TU.Sc2ySwM_344.3206 Anthoceros agrestis HOM05D005184 ORTHO05D006222 1.5e-31 139.8 121 57.9
CDE06G1803 Ceratophyllum demersum HOM05D005184 ORTHO05D006222 9.9e-31 137.1 119 64.7
Pp3c1_7410 Physcomitrium patens HOM05D005184 ORTHO05D006222 2.1e-28 129.4 120 55.0
HPP92_015265 Vanilla planifolia HOM05D000076 ORTHO05D002949 1.0e-27 127.1 132 54.5
THA.LOC104822060 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 1.7e-27 126.3 124 50.0
Aa31LG7G7840 Aethionema arabicum HOM05D005184 ORTHO05D006222 2.3e-27 125.9 124 52.4
Carub.0001s2347 Capsella rubella HOM05D005184 ORTHO05D006222 2.3e-27 125.9 133 51.1
AUR62005318 Chenopodium quinoa HOM05D005184 ORTHO05D006222 5.1e-27 124.8 86 74.4
THA.LOC104808902 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 6.6e-27 124.4 124 50.8
GSVIVG01020163001 Vitis vinifera HOM05D005184 ORTHO05D006222 6.6e-27 124.4 84 77.4
Sp1g21380 Schrenkiella parvula HOM05D005184 ORTHO05D006222 1.1e-26 123.6 133 49.6
vmacro22616 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 3.3e-26 122.1 80 78.8
AL1G37810 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 4.3e-26 121.7 124 51.6
Cc02_g24860 Coffea canephora HOM05D005184 ORTHO05D006222 4.3e-26 121.7 128 57.0
Nitab4.5_0000031g0060 Nicotiana tabacum HOM05D005184 ORTHO05D006222 4.3e-26 121.7 90 70.0
ATR1149G050 Amborella trichopoda HOM05D005184 ORTHO05D006222 5.6e-26 121.3 81 74.1
DCAR_007099 Daucus carota HOM05D005184 ORTHO05D006222 1.3e-25 120.2 138 52.9
SGA_v2.0_scaffold166G38348 Striga asiatica HOM05D005184 ORTHO05D006222 1.3e-25 120.2 92 69.6
AT1G24050 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 1.6e-25 119.8 124 50.8
CARHR024350 Cardamine hirsuta HOM05D005184 ORTHO05D006222 1.6e-25 119.8 124 51.6
Lj3A1049G57 Lonicera japonica HOM05D005184 ORTHO05D006222 3.6e-25 118.6 83 72.3
BcaC05g26302 Brassica carinata HOM05D005184 ORTHO05D006222 6.2e-25 117.9 127 49.6
BolC5t31020H Brassica oleracea HOM05D005184 ORTHO05D006222 1.5e-23 113.2 128 49.2
Thhalv10009785m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 1.5e-23 113.2 124 50.8
C05p23190 Brassica napus HOM05D001690 ORTHO05D009096 4.5e-23 111.7 128 49.2
BcaB07g32379 Brassica carinata HOM05D005184 ORTHO05D006222 5.8e-23 111.3 124 50.0
A09p40800 Brassica napus HOM05D001690 ORTHO05D009096 5.8e-23 111.3 128 49.2
C07p20080 Brassica napus HOM05D005184 ORTHO05D006222 5.8e-23 111.3 124 46.8
BolC7t42528H Brassica oleracea HOM05D005184 ORTHO05D006222 5.8e-23 111.3 124 46.8
BraA09t39575Z Brassica rapa HOM05D005184 ORTHO05D006222 5.8e-23 111.3 128 49.2
Cc00_g31660 Coffea canephora HOM05D005184 ORTHO05D006222 1.3e-22 110.2 126 52.4
BcaC06g35075 Brassica carinata HOM05D005184 ORTHO05D006222 6.4e-22 107.8 126 48.4
Hund05960 Selenicereus undatus HOM05D005184 ORTHO05D006222 1.4e-21 106.7 71 76.1
BraA07t29118Z Brassica rapa HOM05D005184 ORTHO05D006222 2.4e-21 105.9 124 44.4
SMO117G0191 Selaginella moellendorffii HOM05D005184 ORTHO05D006222 4.2e-21 105.1 120 45.8
BraA02t06699Z Brassica rapa HOM05D005184 ORTHO05D006222 1.1e-18 97.1 124 41.1
A02p16400 Brassica napus HOM05D005184 ORTHO05D006222 1.9e-18 96.3 142 38.0
Carub.0002s1692 Capsella rubella HOM05D005184 ORTHO05D006222 3.6e-17 92.0 128 39.8
Pp3c7_23840 Physcomitrium patens HOM05D005184 ORTHO05D006222 3.6e-17 92.0 84 57.1
C02p27410 Brassica napus HOM05D005184 ORTHO05D006222 4.8e-17 91.7 122 41.8
BolC2t08801H Brassica oleracea HOM05D005184 ORTHO05D006222 6.2e-17 91.3 122 41.8
BcaC03g15168 Brassica carinata HOM05D005184 ORTHO05D006222 1.4e-16 90.1 122 41.0
EL10Ac6g13619 Beta vulgaris HOM05D005184 ORTHO05D006222 3.1e-16 89.0 65 72.3
RcHm_v2.0_Chr4g0444381 Rosa chinensis HOM05D005184 ORTHO05D006222 5.3e-16 88.2 59 76.3
Thhalv10019170m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 1.2e-15 87.0 140 40.0
AL2G29520 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 2.0e-15 86.3 126 38.1
Cre10.g421850 Chlamydomonas reinhardtii HOM05D005184 ORTHO05D006222 2.6e-15 85.9 117 36.8
Sp5g25350 Schrenkiella parvula HOM05D005184 ORTHO05D006222 3.4e-15 85.5 124 40.3
Cc00_g05590 Coffea canephora HOM05D005184 ORTHO05D006222 7.6e-15 84.3 80 57.5
CARHR063340 Cardamine hirsuta HOM05D005184 ORTHO05D006222 1.7e-14 83.2 127 39.4
AT1G70220 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 1.9e-13 79.7 124 36.3
BcaB03g14122 Brassica carinata HOM05D005184 ORTHO05D006222 2.1e-12 76.3 71 54.9
Cc00_g11840 Coffea canephora HOM05D001087 ORTHO05D006222 1.0e-11 73.9 65 60.0
A07p13470 Brassica napus HOM05D005184 ORTHO05D006222 1.3e-09 67.0 96 36.5
RcHm_v2.0_Chr4g0444371 Rosa chinensis HOM05D005184 ORTHO05D006222 3.1e-08 62.4 47 66.0
BcaB05g24540 Brassica carinata HOM05D005184 ORTHO05D006222 6.9e-08 61.2 79 44.3
MCO16G256 Micromonas commoda HOM05D005184 ORTHO05D006222 7.6e-07 57.8 119 27.7


User provided reference genes

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