Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0020195 Sechium edule HOM05D007498 ORTHO05D009384 7.6e-217 756.9 390 100.0
CsaV3_6G037690 Cucumis sativus L. HOM05D007498 ORTHO05D009384 7.7e-169 597.4 390 78.7
MELO3C014431.2 Cucumis melo HOM05D007498 ORTHO05D009384 4.0e-149 531.9 430 67.2
ClCG07G002420 Citrullus lanatus HOM05D007498 ORTHO05D009384 3.2e-138 495.7 390 69.0
QL08p030918 Quercus lobata HOM05D007498 ORTHO05D009384 5.2e-133 478.4 385 64.9
CiPaw.03G155900 Carya illinoinensis HOM05D007498 ORTHO05D009384 2.3e-128 463.0 387 63.8
TWI18G0826 Tripterygium wilfordii HOM05D007498 ORTHO05D009384 1.4e-125 453.8 392 60.5
Dinv08726 Davidia involucrata HOM05D007498 ORTHO05D009384 7.6e-124 448.0 386 61.4
Manes.12G070200 Manihot esculenta HOM05D007498 ORTHO05D009384 5.4e-122 441.8 397 58.9
Thecc.01G181300 Theobroma cacao HOM05D007498 ORTHO05D009384 1.0e-120 437.6 395 59.7
MD17G1103400 Malus domestica HOM05D007498 ORTHO05D009384 1.3e-120 437.2 393 60.3
Prupe.3G211200 Prunus persica HOM05D007498 ORTHO05D009384 3.0e-120 436.0 391 60.1
COL.COLO4_21864 Corchorus olitorius HOM05D007498 ORTHO05D009384 1.9e-119 433.3 395 59.0
CANSAT64G1398 Cannabis sativa HOM05D007498 ORTHO05D009384 7.3e-119 431.4 389 58.9
Hma1.2p1_2381F.1_g320980 Hydrangea macrophylla HOM05D007498 ORTHO05D009384 1.6e-118 430.3 400 57.0
Hma1.2p1_0445F.1_g154420 Hydrangea macrophylla HOM05D007498 ORTHO05D009384 3.6e-118 429.1 400 56.8
CSS0038240 Camellia sinensis var. sinensis HOM05D007498 ORTHO05D009384 1.8e-117 426.8 383 60.1
RcHm_v2.0_Chr2g0158311 Rosa chinensis HOM05D007498 ORTHO05D009384 4.0e-117 425.6 393 58.5
Ciclev10015493m.g Citrus clementina HOM05D007498 ORTHO05D009384 5.3e-117 425.2 389 59.1
TAR629G3061 Trochodendron aralioides HOM05D007498 ORTHO05D009384 5.3e-117 425.2 383 58.0
GSVIVG01030496001 Vitis vinifera HOM05D007498 ORTHO05D009384 6.9e-117 424.9 394 60.2
Actinidia09741 Actinidia chinensis HOM05D007498 ORTHO05D009384 4.4e-116 422.2 383 59.0
Lj6g0022389 Lotus japonicus HOM05D007498 ORTHO05D009384 5.8e-116 421.8 393 57.0
FvH4_6g42420 Fragaria vesca HOM05D007498 ORTHO05D009384 1.3e-115 420.6 388 57.2
Actinidia13735 Actinidia chinensis HOM05D007498 ORTHO05D009384 1.7e-115 420.2 382 59.2
Gohir.A07G187000 Gossypium hirsutum HOM05D007498 ORTHO05D009384 3.8e-115 419.1 393 56.2
Sabra14G0119400 Salix brachista HOM05D007498 ORTHO05D009384 6.4e-115 418.3 418 57.7
FAN05G5059 Fragaria x ananassa HOM05D007498 ORTHO05D009384 1.4e-114 417.2 388 57.7
TPR.G34497 Trifolium pratense HOM05D007498 ORTHO05D009384 1.2e-113 414.1 395 53.7
Rhsim09G0054300 Rhododendron simsii HOM05D007498 ORTHO05D009384 4.6e-113 412.1 430 54.2
Rhsim06G0166900 Rhododendron simsii HOM05D007498 ORTHO05D009384 7.9e-113 411.4 430 54.0
Medtr3g080260 Medicago truncatula HOM05D007498 ORTHO05D009384 1.7e-112 410.2 397 54.2
Gorai.001G216600 Gossypium raimondii HOM05D007498 ORTHO05D009384 2.3e-112 409.8 394 55.6
Eucgr.A01096 Eucalyptus grandis HOM05D007498 ORTHO05D009384 1.1e-111 407.5 361 59.8
Cc05_g03070 Coffea canephora HOM05D007498 ORTHO05D009384 1.9e-111 406.8 369 56.9
Phvul.006G012811 Phaseolus vulgaris HOM05D007498 ORTHO05D009384 7.3e-111 404.8 390 54.6
Sc21g0001170 Simmondsia chinensis HOM05D007498 ORTHO05D009384 4.0e-109 399.1 380 55.8
HanXRQChr12g0373631 Helianthus annuus HOM05D007498 ORTHO05D009384 5.3e-109 398.7 381 54.1
THA.LOC104815344 Tarenaya hassleriana HOM05D007498 ORTHO05D009384 1.7e-107 393.7 398 53.8
vmacro12166 Vaccinium macrocarpon HOM05D007498 ORTHO05D009384 2.9e-107 392.9 461 49.5
Nn1g03383 Nelumbo nucifera HOM05D007498 ORTHO05D009384 1.1e-106 391.0 382 54.5
Lsat_1_v5_gn_5_123880 Lactuca sativa HOM05D007498 ORTHO05D009384 1.9e-106 390.2 388 53.6
Nitab4.5_0006063g0010 Nicotiana tabacum HOM05D007498 ORTHO05D009384 2.1e-105 386.7 366 56.6
Gorai.001G095600 Gossypium raimondii HOM05D007498 ORTHO05D009384 2.7e-105 386.3 393 54.7
AL3G43270 Arabidopsis lyrata HOM05D007498 ORTHO05D009384 6.0e-105 385.2 390 52.8
Carub.0003s2696 Capsella rubella HOM05D007498 ORTHO05D009384 1.0e-104 384.4 390 52.1
PGR042G1731 Punica granatum HOM05D007498 ORTHO05D009384 3.9e-104 382.5 387 55.6
AT2G05755 Arabidopsis thaliana HOM05D007498 ORTHO05D009384 6.7e-104 381.7 389 53.2
Lj1A780G53 Lonicera japonica HOM05D007498 ORTHO05D009384 1.9e-103 380.2 383 53.0
Sp3g24210 Schrenkiella parvula HOM05D007498 ORTHO05D009384 2.5e-103 379.8 397 53.1
PSO541G2474 Papaver somniferum HOM05D007498 ORTHO05D009384 3.3e-103 379.4 390 52.6
CARHR103340 Cardamine hirsuta HOM05D007498 ORTHO05D009384 9.6e-103 377.9 392 53.1
Sopen05g026100 Solanum pennellii HOM05D007498 ORTHO05D009384 1.3e-102 377.5 360 54.2
MBI19_g41387_MAGBIO Magnolia biondii HOM05D007498 ORTHO05D009384 6.2e-102 375.2 385 51.4
Nitab4.5_0000019g0370 Nicotiana tabacum HOM05D007498 ORTHO05D009384 1.8e-101 373.6 352 56.8
Peaxi162Scf00100g01524 Petunia axillaris HOM05D007498 ORTHO05D009384 3.1e-101 372.9 331 60.4
Aa31LG8G11370 Aethionema arabicum HOM05D007498 ORTHO05D009384 6.9e-101 371.7 392 51.8
Solyc05g042050.4 Solanum lycopersicum HOM05D007498 ORTHO05D009384 6.9e-101 371.7 360 53.3
C03p55520 Brassica napus HOM05D007498 ORTHO05D009384 1.2e-100 370.9 399 51.6
A03p44690 Brassica napus HOM05D007498 ORTHO05D009384 1.5e-100 370.5 399 51.9
BcaC01g03153 Brassica carinata HOM05D007498 ORTHO05D009384 2.6e-100 369.8 399 51.4
BcaB08g34508 Brassica carinata HOM05D007498 ORTHO05D009384 7.6e-100 368.2 399 51.6
MD09G1113300 Malus domestica HOM05D007498 ORTHO05D009384 1.7e-99 367.1 327 60.2
PSO675G1300 Papaver somniferum HOM05D007498 ORTHO05D009384 1.7e-99 367.1 419 49.4
Aqoxy1G04193 Aquilegia oxysepala HOM05D007498 ORTHO05D009384 1.9e-98 363.6 368 52.2
BolC3t17828H Brassica oleracea HOM05D000228 ORTHO05D001122 7.1e-98 361.7 412 50.0
BraA03t13603Z Brassica rapa HOM05D007498 ORTHO05D009384 1.6e-97 360.5 412 50.0
Gohir.D07G193500 Gossypium hirsutum HOM05D007498 ORTHO05D009384 5.1e-96 355.5 314 58.0
Lsat_1_v5_gn_7_95281 Lactuca sativa HOM05D007498 ORTHO05D009384 2.5e-95 353.2 361 50.4
Duzib138G1101 Durio zibethinus HOM05D007498 ORTHO05D009384 7.4e-87 325.1 394 49.0
ATR0059G023 Amborella trichopoda HOM05D007498 ORTHO05D009384 6.9e-85 318.5 379 45.1
FAN09G2551 Fragaria x ananassa HOM05D007498 ORTHO05D009384 3.7e-78 296.2 315 53.0
Thhalv10002583m.g Eutrema salsugineum HOM05D007498 ORTHO05D009384 3.4e-76 289.7 404 45.5
Psat5g106880 Pisum sativum HOM05D007498 ORTHO05D009384 1.0e-75 288.1 280 53.9
Gohir.D07G089300 Gossypium hirsutum HOM05D007498 ORTHO05D009384 1.4e-74 284.3 279 55.2
Gohir.A07G083200 Gossypium hirsutum HOM05D007498 ORTHO05D009384 1.2e-73 281.2 278 55.4
ECA234G3795 Erigeron canadensis HOM05D007498 ORTHO05D009384 1.4e-72 277.7 303 50.5
Ca_16281_v3 Cicer arietinum L. HOM05D007498 ORTHO05D009384 1.5e-71 274.2 395 42.5
SEGI_23048 Sequoiadendron giganteum HOM05D007498 ORTHO05D009384 2.8e-70 270.0 344 41.0
Potri.014G157700 Populus trichocarpa HOM05D007498 ORTHO05D009384 4.5e-68 262.7 231 63.6
Aqoxy1G02942 Aquilegia oxysepala HOM05D007498 ORTHO05D009384 3.6e-65 253.1 252 54.4
CDE07G0657 Ceratophyllum demersum HOM05D000323 ORTHO05D009384 1.1e-58 231.5 321 42.4
FAN14G0249 Fragaria x ananassa HOM05D007498 ORTHO05D001133 7.2e-58 228.8 393 40.7
MD09G1113200 Malus domestica HOM05D007498 ORTHO05D009384 1.2e-52 211.5 230 51.7
AagrBONN_evm.TU.Sc2ySwM_344.4295 Anthoceros agrestis HOM05D007498 ORTHO05D009384 1.8e-48 197.6 322 33.9
DCAR_019260 Daucus carota HOM05D007498 ORTHO05D001133 1.2e-47 194.9 167 57.5
Mapoly0005s0243 Marchantia polymorpha HOM05D007498 ORTHO05D009384 2.3e-40 170.6 294 32.7
Cpa.g.sc132.15 Carica papaya HOM05D007498 ORTHO05D009384 6.8e-40 169.1 143 61.5
Haze_12773 Corylus avellana HOM05D007498 ORTHO05D009384 1.3e-35 154.8 202 48.0
Pp3c17_21590 Physcomitrium patens HOM05D007498 ORTHO05D009384 1.4e-32 144.8 292 31.2
SMO146G0054 Selaginella moellendorffii HOM05D007498 ORTHO05D009384 3.0e-27 127.1 298 30.2
VMungo0540G0169 Vigna mungo HOM05D007498 ORTHO05D009384 2.0e-23 114.4 110 52.7
Atru.chr6.3249 Acer truncatum HOM05D007498 ORTHO05D009384 4.6e-20 103.2 92 53.3
Atru.chr6.3248 Acer truncatum HOM05D007498 ORTHO05D009384 1.2e-17 95.1 77 64.9
Aqoxy1G02941 Aquilegia oxysepala HOM05D007498 ORTHO05D009384 1.1e-16 92.0 105 43.8
VMungo0540G1885 Vigna mungo HOM05D007498 ORTHO05D009384 4.9e-14 83.2 77 54.5
Cfa025227 Carpinus fangiana HOM05D007498 ORTHO05D009384 3.1e-08 63.9 418 22.7
Cre02.g079650 Chlamydomonas reinhardtii HOM05D024201 ORTHO05D009384 1.7e-06 58.2 262 21.4


User provided reference genes

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