Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0020154 Sechium edule HOM05D007924 ORTHO05D010328 3.5e-109 398.3 196 100.0
Nn1g10039 Nelumbo nucifera HOM05D007924 ORTHO05D010328 1.4e-94 349.7 193 90.7
Nn1g10153 Nelumbo nucifera HOM05D007924 ORTHO05D010328 3.0e-89 332.0 182 90.7
SHI38116 Sapria himalayana HOM05D007924 ORTHO05D010328 3.0e-89 332.0 195 85.6
RhsimMtG0003200 Rhododendron simsii HOM05D007924 ORTHO05D010328 3.1e-86 322.0 168 92.3
GSVIVG01000955001 Vitis vinifera HOM05D007924 ORTHO05D010328 3.5e-85 318.5 160 95.6
LjContig00315g0007302 Lotus japonicus HOM05D007924 ORTHO05D010328 1.3e-84 316.6 195 81.5
Lj2P1227T93 Lonicera japonica HOM05D007924 ORTHO05D010328 5.0e-84 314.7 160 95.0
PGR028G0018 Punica granatum HOM05D007924 ORTHO05D010328 1.5e-83 313.2 158 95.6
TPR.G7050 Trifolium pratense HOM05D007924 ORTHO05D010328 1.2e-82 310.1 173 87.3
CSS0018158 Camellia sinensis var. sinensis HOM05D007924 ORTHO05D010328 8.0e-82 307.4 160 93.1
CANSAT16G0013 Cannabis sativa HOM05D007924 ORTHO05D010328 1.4e-81 306.6 160 91.9
HanXRQMTg0579161 Helianthus annuus HOM05D007924 ORTHO05D010328 3.0e-81 305.4 160 91.9
Lalb_Chr00c24g0406701 Lupinus albus HOM05D007924 ORTHO05D010328 1.2e-80 303.5 174 85.6
RcHm_v2.0_Chr6g0257961 Rosa chinensis HOM05D007924 ORTHO05D010328 5.8e-80 301.2 160 91.2
RcHm_v2.0_MTg0498901 Rosa chinensis HOM05D007924 ORTHO05D010328 5.8e-80 301.2 160 91.2
SGA_v2.0_scaffold575G53004 Striga asiatica HOM05D007924 ORTHO05D010328 1.7e-79 299.7 160 88.8
DCAR_032428 Daucus carota HOM05D007924 ORTHO05D010328 1.1e-78 297.0 160 89.4
PGSC0003DMG400011350 Solanum tuberosum HOM05D007924 ORTHO05D010328 1.2e-77 293.5 160 90.0
CAN.G1180.17 Capsicum annuum HOM05D007924 ORTHO05D010328 3.9e-76 288.5 160 88.8
Duzib116G0340 Durio zibethinus HOM05D007924 ORTHO05D010328 4.4e-72 275.0 157 86.0
Lj3g0001131 Lotus japonicus HOM05D007924 ORTHO05D010328 6.4e-71 271.2 158 83.5
AT2G07707 Arabidopsis thaliana HOM05D007924 ORTHO05D010328 2.1e-69 266.2 160 83.8
ATMG00480 Arabidopsis thaliana HOM05D007924 ORTHO05D010328 2.1e-69 266.2 160 83.8
CARHR282860 Cardamine hirsuta HOM05D007924 ORTHO05D010328 2.1e-69 266.2 160 83.8
BraSC48t46292Z Brassica rapa HOM05D007924 ORTHO05D010328 6.0e-69 264.6 160 83.1
BraSC48t46309Z Brassica rapa HOM05D007924 ORTHO05D010328 6.0e-69 264.6 160 83.1
Nitab4.5_0003945g0040 Nicotiana tabacum HOM05D007924 ORTHO05D010328 1.3e-68 263.5 150 85.3
Thhalv10029138m.g Eutrema salsugineum HOM05D007924 ORTHO05D010328 1.1e-67 260.4 160 81.9
Lalb_Chr14g0363841 Lupinus albus HOM05D007924 ORTHO05D010328 7.3e-67 257.7 174 75.3
BolC1t03437H Brassica oleracea HOM05D007924 ORTHO05D010328 5.2e-65 251.5 160 80.0
CAN.G1001.34 Capsicum annuum HOM05D007924 ORTHO05D010328 1.7e-63 246.5 160 78.8
Nitab4.5_0000172g0710 Nicotiana tabacum HOM05D007924 ORTHO05D010328 7.8e-61 237.7 157 76.4
Ca_03774_v3 Cicer arietinum L. HOM05D007924 ORTHO05D010328 4.0e-57 225.3 126 88.1
HanXRQMTg0579521 Helianthus annuus HOM05D007924 ORTHO05D010328 1.2e-56 223.8 142 79.6
Gorai.001G164500 Gossypium raimondii HOM05D007924 ORTHO05D010328 7.6e-56 221.1 122 86.1
Nitab4.5_0028251g0010 Nicotiana tabacum HOM05D007924 ORTHO05D010328 1.0e-52 210.7 145 77.9
Nitab4.5_0000844g0160 Nicotiana tabacum HOM05D007924 ORTHO05D010328 8.1e-50 201.1 128 78.9
Oeu018666.1 Olea europaea HOM05D007924 ORTHO05D010328 1.1e-49 200.7 102 94.1
CsaV3_5G016970 Cucumis sativus L. HOM05D007924 ORTHO05D010328 1.7e-47 193.4 114 83.3
SabraMtG0001000 Salix brachista HOM05D007924 ORTHO05D010328 2.9e-47 192.6 119 80.7
RcHm_v2.0_MTg0499211 Rosa chinensis HOM05D007924 ORTHO05D010328 7.1e-46 188.0 101 87.1
HanXRQChr00c0055g0571411 Helianthus annuus HOM05D007924 ORTHO05D010328 2.0e-40 169.9 88 90.9
HanXRQChr09g0250631 Helianthus annuus HOM05D007924 ORTHO05D010328 9.3e-38 161.0 88 87.5
CsaV3_5G015830 Cucumis sativus L. HOM05D007924 ORTHO05D010328 1.2e-37 160.6 97 80.4
CsaV3_UNG210380 Cucumis sativus L. HOM05D007924 ORTHO05D010328 2.8e-34 149.4 84 84.5
Nitab4.5_0003222g0040 Nicotiana tabacum HOM05D007924 ORTHO05D010328 1.1e-33 147.5 113 68.1
HanXRQChr15g0468771 Helianthus annuus HOM05D007924 ORTHO05D010328 1.4e-33 147.1 79 87.3
Cfa023001 Carpinus fangiana HOM05D007924 ORTHO05D010328 4.0e-33 145.6 71 94.4
Phvul.011G125800 Phaseolus vulgaris HOM05D007924 ORTHO05D010328 1.7e-31 140.2 76 88.2
BolSC28t60326H Brassica oleracea HOM05D007924 ORTHO05D011743 2.9e-31 139.4 83 78.3
BraSC159t45717Z Brassica rapa HOM05D007924 ORTHO05D010328 2.9e-31 139.4 83 78.3
arahy.Tifrunner.gnm1.ann1.I8TN6N Arachis hypogaea HOM05D007924 ORTHO05D010328 3.2e-30 136.0 80 82.5
C01p34680 Brassica napus HOM05D007924 ORTHO05D010328 6.7e-28 128.3 83 73.5
Nitab4.5_0004553g0090 Nicotiana tabacum HOM05D007924 ORTHO05D010328 8.7e-28 127.9 80 78.8
Nitab4.5_0000172g1200 Nicotiana tabacum HOM05D007924 ORTHO05D007069 3.8e-23 112.5 72 80.6
BraSC48t46342Z Brassica rapa HOM05D007924 ORTHO05D010328 4.6e-21 105.5 71 71.8
CsaV3_3G039780 Cucumis sativus L. HOM05D000558 ORTHO05D006060 6.0e-21 105.1 64 82.8
BolSC28t60430H Brassica oleracea HOM05D007924 ORTHO05D010328 3.0e-20 102.8 52 90.4
PGSC0003DMG400013141 Solanum tuberosum HOM05D007924 ORTHO05D010328 5.7e-19 98.6 60 81.7
Nitab4.5_0002418g0260 Nicotiana tabacum HOM05D007924 ORTHO05D010328 8.2e-18 94.7 58 81.0
SHI38118 Sapria himalayana HOM05D007924 ORTHO05D010328 1.7e-15 87.0 49 81.6
Nitab4.5_0002734g0010 Nicotiana tabacum HOM05D007924 ORTHO05D010328 5.0e-15 85.5 59 72.9
MD02G1208400 Malus domestica HOM05D007924 ORTHO05D010328 5.5e-14 82.0 44 84.1
SHI34938 Sapria himalayana HOM05D007924 ORTHO05D010328 9.4e-14 81.3 74 60.8
Ah.02g118920 Amaranthus hybridus HOM05D005794 ORTHO05D006814 1.4e-12 77.4 45 84.4
Potri.011G045912 Populus trichocarpa HOM05D007924 ORTHO05D010328 2.5e-11 73.2 59 64.4
Sed0019535 Sechium edule HOM05D006604 ORTHO05D007974 2.6e-08 63.2 104 46.2
A06p10930 Brassica napus HOM05D007924 ORTHO05D010328 3.2e-06 56.2 40 62.5
SalBow1G4628 Salvia bowleyana HOM05D005794 ORTHO05D006814 4.2e-06 55.8 31 87.1


User provided reference genes

Program Settings