Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0020093 Sechium edule HOM05D007994 ORTHO05D010092 6.8e-148 527.3 270 100.0
ClCG01G012620 Citrullus lanatus HOM05D007994 ORTHO05D010092 4.2e-105 385.2 272 72.4
CsaV3_1G014550 Cucumis sativus L. HOM05D007994 ORTHO05D010092 3.1e-100 369.0 273 69.2
MELO3C004786.2 Cucumis melo HOM05D007994 ORTHO05D010092 1.0e-95 354.0 273 66.7
Sabra09G0116600 Salix brachista HOM05D007994 ORTHO05D010092 4.4e-62 242.3 265 47.9
Manes.11G158100 Manihot esculenta HOM05D007994 ORTHO05D010092 2.6e-59 233.0 268 44.4
Potri.009G148200 Populus trichocarpa HOM05D007994 ORTHO05D010092 6.5e-58 228.4 265 46.4
Thecc.09G290600 Theobroma cacao HOM05D007994 ORTHO05D010092 1.6e-56 223.8 270 46.3
Duzib168G2077 Durio zibethinus HOM05D007994 ORTHO05D010092 4.7e-56 222.2 277 45.1
Dinv12515 Davidia involucrata HOM05D007994 ORTHO05D010092 1.0e-55 221.1 272 45.2
TAR623G0693 Trochodendron aralioides HOM05D007994 ORTHO05D010092 1.5e-54 217.2 263 47.1
Duzib170G0069 Durio zibethinus HOM05D007994 ORTHO05D010092 1.3e-53 214.2 270 44.8
CiPaw.13G140400 Carya illinoinensis HOM05D007994 ORTHO05D010092 3.7e-53 212.6 268 44.8
COL.COLO4_19306 Corchorus olitorius HOM05D007994 ORTHO05D010092 6.3e-53 211.8 278 44.2
Gorai.006G110000 Gossypium raimondii HOM05D007994 ORTHO05D010092 1.4e-52 210.7 246 46.7
Cfa010076 Carpinus fangiana HOM05D007994 ORTHO05D010092 2.4e-52 209.9 272 46.7
Cc01_g09740 Coffea canephora HOM05D007994 ORTHO05D010092 2.4e-52 209.9 271 42.1
Gohir.A09G093700 Gossypium hirsutum HOM05D007994 ORTHO05D010092 3.1e-52 209.5 272 43.8
Gohir.D09G093400 Gossypium hirsutum HOM05D007994 ORTHO05D010092 1.0e-50 204.5 272 43.8
TWI75G1300 Tripterygium wilfordii HOM05D007994 ORTHO05D010092 1.3e-50 204.1 261 42.9
Haze_23442 Corylus avellana HOM05D007994 ORTHO05D010092 1.9e-49 200.3 248 48.0
Aqoxy4G02880 Aquilegia oxysepala HOM05D007994 ORTHO05D010092 2.5e-49 199.9 259 42.9
Glyma.11G188500 Glycine max HOM05D007994 ORTHO05D010092 1.4e-47 194.1 263 43.0
Atru.chr3.3364 Acer truncatum HOM05D007994 ORTHO05D010092 1.2e-46 191.0 259 43.6
QL01p013577 Quercus lobata HOM05D007994 ORTHO05D010092 2.0e-46 190.3 217 47.5
PSO384G4503 Papaver somniferum HOM05D007994 ORTHO05D010092 3.4e-46 189.5 246 41.9
THA.LOC104814803 Tarenaya hassleriana HOM05D007994 ORTHO05D010092 6.3e-45 185.3 237 43.9
MSTRG.12356 Avicennia marina HOM05D007994 ORTHO05D010092 1.1e-44 184.5 276 38.8
CANSAT54G1189 Cannabis sativa HOM05D007994 ORTHO05D010092 1.4e-44 184.1 264 40.5
Lalb_Chr19g0136731 Lupinus albus HOM05D007994 ORTHO05D010092 7.0e-44 181.8 260 38.5
Prupe.6G120200 Prunus persica HOM05D007994 ORTHO05D010092 2.7e-43 179.9 271 40.6
VMungo1080G0008 Vigna mungo HOM05D007994 ORTHO05D010092 2.7e-43 179.9 263 37.6
MD03G1135900 Malus domestica HOM05D007994 ORTHO05D010092 5.0e-42 175.6 262 41.6
Phvul.011G091200 Phaseolus vulgaris HOM05D007994 ORTHO05D010092 5.0e-42 175.6 256 39.8
Lj3g0008283 Lotus japonicus HOM05D007994 ORTHO05D010092 1.1e-41 174.5 276 40.9
PGSC0003DMG400026538 Solanum tuberosum HOM05D007994 ORTHO05D010092 1.6e-35 154.1 263 35.7
RcHm_v2.0_Chr5g0054991 Rosa chinensis HOM05D007994 ORTHO05D010092 1.5e-30 137.5 281 34.5
Phvul.005G126500 Phaseolus vulgaris HOM05D007994 ORTHO05D010092 3.2e-28 129.8 104 53.8
Solyc11g066940.2 Solanum lycopersicum HOM05D007994 ORTHO05D010092 1.6e-27 127.5 260 33.1
FAN16G1405 Fragaria x ananassa HOM05D007994 ORTHO05D010092 2.3e-26 123.6 269 33.5
VMungo1127G0625 Vigna mungo HOM05D007994 ORTHO05D010092 2.1e-24 117.1 157 42.0
Migut.N02511 Erythranthe guttata HOM05D007994 ORTHO05D010092 2.8e-24 116.7 271 30.6
Eucgr.J00433 Eucalyptus grandis HOM05D007994 ORTHO05D010092 6.2e-24 115.5 108 50.9
Nn2g14036 Nelumbo nucifera HOM05D007994 ORTHO05D010092 6.2e-24 115.5 101 55.4
Peaxi162Scf00002g05422 Petunia axillaris HOM05D007994 ORTHO05D010092 2.3e-23 113.6 266 29.7
SEGI_15329 Sequoiadendron giganteum HOM05D007994 ORTHO05D010092 3.1e-23 113.2 275 29.1
GSVIVG01031390001 Vitis vinifera HOM05D007994 ORTHO05D010092 6.8e-23 112.1 97 52.6
PSO339G3278 Papaver somniferum HOM05D007994 ORTHO05D010092 1.5e-22 110.9 88 48.9
vmacro14359 Vaccinium macrocarpon HOM05D007994 ORTHO05D010092 3.4e-22 109.8 115 48.7
Rhsim01G0207500 Rhododendron simsii HOM05D007994 ORTHO05D010092 6.0e-19 99.0 77 55.8
FAN11G1628 Fragaria x ananassa HOM05D007994 ORTHO05D010092 1.0e-18 98.2 244 32.0
Actinidia35451 Actinidia chinensis HOM05D000078 ORTHO05D010092 1.3e-18 97.8 69 58.0
PGR119G1356 Punica granatum HOM05D007994 ORTHO05D010092 1.7e-18 97.4 150 39.3
Ciclev10029500m.g Citrus clementina HOM05D007994 ORTHO05D010092 3.9e-18 96.3 93 50.5
SalBow3G1236 Salvia bowleyana HOM05D007994 ORTHO05D010092 1.5e-17 94.4 267 28.1
CSS0019289 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.2e-16 91.3 138 43.5
BcaC01g02012 Brassica carinata HOM05D007994 ORTHO05D010092 6.2e-16 89.0 234 27.8
C03p69540 Brassica napus HOM05D007994 ORTHO05D010092 6.2e-16 89.0 234 27.8
BolC3t19209H Brassica oleracea HOM05D007994 ORTHO05D010092 6.2e-16 89.0 234 27.8
A06p21760 Brassica napus HOM05D007994 ORTHO05D010092 8.1e-16 88.6 234 27.4
BraA06t25263Z Brassica rapa HOM05D007994 ORTHO05D010092 8.1e-16 88.6 234 27.4
Sopen11g026660 Solanum pennellii HOM05D007994 ORTHO05D010092 8.1e-16 88.6 89 49.4
Rhsim12G0093900 Rhododendron simsii HOM05D007994 ORTHO05D010092 5.8e-14 82.4 61 55.7
Oeu058281.1 Olea europaea HOM05D007994 ORTHO05D010092 2.4e-12 77.0 59 52.5
TPR.G15591 Trifolium pratense HOM05D007994 ORTHO05D010092 4.1e-12 76.3 68 48.5
BcaB01g01144 Brassica carinata HOM05D007994 ORTHO05D010092 3.5e-11 73.2 45 62.2
Medtr4g055130 Medicago truncatula HOM05D007994 ORTHO05D010092 7.8e-11 72.0 58 46.6
AL5G22890 Arabidopsis lyrata HOM05D007994 ORTHO05D010092 1.3e-10 71.2 49 55.1
Carub.0005s1038 Capsella rubella HOM05D007994 ORTHO05D010092 1.3e-10 71.2 47 57.4
Carub.0015s0006 Capsella rubella HOM05D007994 ORTHO05D010092 1.3e-10 71.2 47 57.4
MD16G1081500 Malus domestica HOM05D003287 ORTHO05D003688 1.3e-10 71.2 242 27.7
CARHR151480 Cardamine hirsuta HOM05D007994 ORTHO05D010092 2.3e-10 70.5 49 55.1
Prupe.3G121800 Prunus persica HOM05D003287 ORTHO05D003688 2.3e-10 70.5 232 26.7
ATR0820G083 Amborella trichopoda HOM05D007994 ORTHO05D010092 5.1e-10 69.3 45 53.3
AT3G44716 Arabidopsis thaliana HOM05D007994 ORTHO05D010092 8.6e-10 68.6 49 53.1
Duzib251G0030 Durio zibethinus HOM05D003287 ORTHO05D003688 2.5e-09 67.0 239 26.4
Sp5g16480 Schrenkiella parvula HOM05D007994 ORTHO05D010092 2.5e-09 67.0 40 62.5
Peaxi162Scf00026g00214 Petunia axillaris HOM05D003287 ORTHO05D003688 7.3e-09 65.5 246 24.0
Solyc05g006700.4 Solanum lycopersicum HOM05D003287 ORTHO05D003688 1.6e-08 64.3 244 22.5
HanXRQChr17g0544541 Helianthus annuus HOM05D003287 ORTHO05D003688 2.8e-08 63.5 253 21.3
Gohir.A03G145300 Gossypium hirsutum HOM05D003287 ORTHO05D003688 3.6e-08 63.2 239 26.4
Gorai.005G189100 Gossypium raimondii HOM05D003287 ORTHO05D003688 3.6e-08 63.2 239 26.4
Nitab4.5_0000408g0030 Nicotiana tabacum HOM05D003287 ORTHO05D003688 3.6e-08 63.2 231 22.9
TWI18G0836 Tripterygium wilfordii HOM05D003287 ORTHO05D003688 3.6e-08 63.2 239 24.7
Duzib248G0322 Durio zibethinus HOM05D003287 ORTHO05D003688 4.7e-08 62.8 246 24.8
Peaxi162Scf00209g00931 Petunia axillaris HOM05D003287 ORTHO05D003688 4.7e-08 62.8 241 22.4
Lj6P699T26 Lonicera japonica HOM05D002950 ORTHO05D009601 6.2e-08 62.4 251 25.1
PGSC0003DMG400022598 Solanum tuberosum HOM05D003287 ORTHO05D003688 6.2e-08 62.4 245 23.7
CAN.G27.49 Capsicum annuum HOM05D003287 ORTHO05D003688 1.1e-07 61.6 240 23.8
Cpa.g.sc5.295 Carica papaya HOM05D003287 ORTHO05D003688 1.4e-07 61.2 239 25.1
Sopen05g002650 Solanum pennellii HOM05D003287 ORTHO05D003688 1.4e-07 61.2 240 22.5
Hma1.2p1_1160F.1_g262450 Hydrangea macrophylla HOM05D002950 ORTHO05D009601 1.8e-07 60.8 251 24.7
MD13G1082400 Malus domestica HOM05D003287 ORTHO05D003688 1.8e-07 60.8 242 25.6
ATR0177G004 Amborella trichopoda HOM05D003287 ORTHO05D003688 4.0e-07 59.7 227 25.6
ECA246G1951 Erigeron canadensis HOM05D003287 ORTHO05D003688 4.0e-07 59.7 248 23.4
Potri.010G158500 Populus trichocarpa HOM05D003287 ORTHO05D003688 4.0e-07 59.7 252 23.8
Sabra10G0120400 Salix brachista HOM05D003287 ORTHO05D003688 4.0e-07 59.7 252 23.8
TWI75G1209 Tripterygium wilfordii HOM05D003287 ORTHO05D003688 4.0e-07 59.7 272 23.2
Actinidia15968 Actinidia chinensis HOM05D002950 ORTHO05D009601 5.2e-07 59.3 242 26.4
Aqoxy3G03695 Aquilegia oxysepala HOM05D003287 ORTHO05D003688 5.2e-07 59.3 222 22.1
Hma1.2p1_0566F.1_g179780 Hydrangea macrophylla HOM05D003287 ORTHO05D003688 5.2e-07 59.3 247 23.9
Nitab4.5_0004088g0080 Nicotiana tabacum HOM05D002950 ORTHO05D009601 5.2e-07 59.3 227 24.7
Gorai.013G094000 Gossypium raimondii HOM05D005706 ORTHO05D007474 6.8e-07 58.9 223 22.4
Ciclev10032232m.g Citrus clementina HOM05D003287 ORTHO05D003688 8.9e-07 58.5 243 23.0
FAN12G3100 Fragaria x ananassa HOM05D003287 ORTHO05D003688 8.9e-07 58.5 232 24.6
Sabra08G0075500 Salix brachista HOM05D002950 ORTHO05D009601 8.9e-07 58.5 236 25.0
Sc04g0008570 Simmondsia chinensis HOM05D003287 ORTHO05D003688 8.9e-07 58.5 231 22.9
CSS0039777 Camellia sinensis var. sinensis HOM05D003287 ORTHO05D003688 1.2e-06 58.2 223 23.8
FvH4_4g30030 Fragaria vesca HOM05D003287 ORTHO05D003688 1.2e-06 58.2 232 24.6
Lsat_1_v5_gn_3_50580 Lactuca sativa HOM05D003287 ORTHO05D003688 1.2e-06 58.2 223 23.3
Nitab4.5_0002052g0030 Nicotiana tabacum HOM05D003287 ORTHO05D003688 1.2e-06 58.2 228 21.9
Nitab4.5_0008210g0020 Nicotiana tabacum HOM05D002950 ORTHO05D009601 1.2e-06 58.2 228 24.6
CSS0035567 Camellia sinensis var. sinensis HOM05D003287 ORTHO05D003688 1.5e-06 57.8 223 23.3
Peaxi162Scf00175g00117 Petunia axillaris HOM05D003287 ORTHO05D003688 1.5e-06 57.8 222 22.5
Psat7g190280 Pisum sativum HOM05D007994 ORTHO05D010092 1.5e-06 57.8 47 44.7
Dinv29530 Davidia involucrata HOM05D002950 ORTHO05D009601 2.0e-06 57.4 230 25.7
Oeu022694.1 Olea europaea HOM05D002950 ORTHO05D009601 2.6e-06 57.0 260 24.6
Potri.008G095900 Populus trichocarpa HOM05D003287 ORTHO05D003688 2.6e-06 57.0 260 23.5
Sed0010906 Sechium edule HOM05D002950 ORTHO05D009601 2.6e-06 57.0 287 24.4
DCAR_023384 Daucus carota HOM05D002950 ORTHO05D009601 3.4e-06 56.6 251 23.9
Gohir.A13G082600 Gossypium hirsutum HOM05D005706 ORTHO05D007474 3.4e-06 56.6 223 22.9
Gohir.D13G082200 Gossypium hirsutum HOM05D005706 ORTHO05D007474 3.4e-06 56.6 223 22.0
TAR264G0005 Trochodendron aralioides HOM05D003287 ORTHO05D003688 4.4e-06 56.2 246 21.5
HanXRQChr12g0375241 Helianthus annuus HOM05D003287 ORTHO05D003688 5.8e-06 55.8 222 22.5
Manes.01G027500 Manihot esculenta HOM05D003287 ORTHO05D003688 5.8e-06 55.8 253 21.3
Medtr4g053310 Medicago truncatula HOM05D007994 ORTHO05D010092 5.8e-06 55.8 36 47.2
TAR629G0740 Trochodendron aralioides HOM05D003322 ORTHO05D004228 5.8e-06 55.8 243 21.8
CSS0023681 Camellia sinensis var. sinensis HOM05D003287 ORTHO05D003688 7.6e-06 55.5 222 23.9
Solyc01g088500.3 Solanum lycopersicum HOM05D002950 ORTHO05D009601 7.6e-06 55.5 229 23.1
Sopen01g035360 Solanum pennellii HOM05D002950 ORTHO05D009601 7.6e-06 55.5 229 23.1
vmacro10425 Vaccinium macrocarpon HOM05D003287 ORTHO05D003688 7.6e-06 55.5 250 24.4
Haze_12088 Corylus avellana HOM05D003287 ORTHO05D003688 9.9e-06 55.1 244 25.4
Lsat_1_v5_gn_3_53820 Lactuca sativa HOM05D000677 ORTHO05D000727 9.9e-06 55.1 250 23.2


User provided reference genes

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