Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0020064 Sechium edule HOM05D005761 ORTHO05D007286 1.8e-54 215.7 108 100.0
ClCG10G006430 Citrullus lanatus HOM05D005761 ORTHO05D007286 2.4e-35 152.1 99 77.8
ClCG09G001920 Citrullus lanatus HOM05D005761 ORTHO05D007286 3.1e-35 151.8 99 76.8
MELO3C016564.2 Cucumis melo HOM05D005761 ORTHO05D007286 3.1e-35 151.8 99 76.8
Sed0000486 Sechium edule HOM05D005761 ORTHO05D007286 4.1e-35 151.4 99 76.8
CsaV3_3G005910 Cucumis sativus L. HOM05D005761 ORTHO05D007286 1.5e-34 149.4 99 74.7
Thecc.06G093100 Theobroma cacao HOM05D005761 ORTHO05D007286 6.5e-33 144.1 98 72.4
Glyma.08G204400 Glycine max HOM05D005761 ORTHO05D007286 1.1e-32 143.3 98 71.4
Dinv38013 Davidia involucrata HOM05D005761 ORTHO05D007286 1.4e-32 142.9 98 70.4
Lj3g0012819 Lotus japonicus HOM05D005761 ORTHO05D007286 1.4e-32 142.9 98 71.4
Ciclev10022630m.g Citrus clementina HOM05D005761 ORTHO05D007286 1.9e-32 142.5 98 70.4
Gohir.A05G132200 Gossypium hirsutum HOM05D005761 ORTHO05D007286 1.9e-32 142.5 98 71.4
Gohir.A10G081800 Gossypium hirsutum HOM05D005761 ORTHO05D007286 1.9e-32 142.5 98 72.4
Gohir.D05G131700 Gossypium hirsutum HOM05D005761 ORTHO05D007286 1.9e-32 142.5 98 71.4
Gorai.009G135400 Gossypium raimondii HOM05D005761 ORTHO05D007286 1.9e-32 142.5 98 71.4
DCAR_016208 Daucus carota HOM05D005761 ORTHO05D007286 2.5e-32 142.1 99 68.7
Gohir.D10G069650 Gossypium hirsutum HOM05D005761 ORTHO05D007286 2.5e-32 142.1 98 72.4
Gorai.011G073900 Gossypium raimondii HOM05D005761 ORTHO05D007286 2.5e-32 142.1 98 72.4
Lj5A57G74 Lonicera japonica HOM05D005761 ORTHO05D007286 2.5e-32 142.1 99 68.7
Rhsim08G0224400 Rhododendron simsii HOM05D005761 ORTHO05D007286 2.5e-32 142.1 98 72.4
Nn2g11672 Nelumbo nucifera HOM05D005761 ORTHO05D007286 4.2e-32 141.4 98 71.4
COL.COLO4_30441 Corchorus olitorius HOM05D005761 ORTHO05D007286 5.5e-32 141.0 98 70.4
Hma1.2p1_1195F.1_g265890 Hydrangea macrophylla HOM05D005761 ORTHO05D007286 5.5e-32 141.0 98 70.4
Ca_06670_v3 Cicer arietinum L. HOM05D005761 ORTHO05D007286 9.3e-32 140.2 98 70.4
TWI12G1054 Tripterygium wilfordii HOM05D005761 ORTHO05D007286 9.3e-32 140.2 98 67.3
TWI75G0371 Tripterygium wilfordii HOM05D005761 ORTHO05D007286 9.3e-32 140.2 98 68.4
vmacro18882 Vaccinium macrocarpon HOM05D005761 ORTHO05D007286 9.3e-32 140.2 98 70.4
arahy.Tifrunner.gnm1.ann1.IDML3X Arachis hypogaea HOM05D005761 ORTHO05D007286 1.6e-31 139.4 98 69.4
arahy.Tifrunner.gnm1.ann1.QAD112 Arachis hypogaea HOM05D005761 ORTHO05D007286 1.6e-31 139.4 98 69.4
Eucgr.F03043 Eucalyptus grandis HOM05D005761 ORTHO05D007286 2.1e-31 139.0 98 70.4
Manes.04G130300 Manihot esculenta HOM05D005761 ORTHO05D007286 2.1e-31 139.0 98 67.3
Psat2g181000 Pisum sativum HOM05D005761 ORTHO05D007286 2.1e-31 139.0 98 70.4
TPR.G19588 Trifolium pratense HOM05D005761 ORTHO05D007286 2.1e-31 139.0 98 69.4
Duzib192G1004 Durio zibethinus HOM05D005761 ORTHO05D007286 2.7e-31 138.7 98 69.4
Atru.chr5.1334 Acer truncatum HOM05D005761 ORTHO05D007286 3.6e-31 138.3 98 68.4
DCAR_023065 Daucus carota HOM05D005761 ORTHO05D007286 3.6e-31 138.3 99 67.7
Medtr5g011180 Medicago truncatula HOM05D005761 ORTHO05D007286 3.6e-31 138.3 98 70.4
Atru.chr5.1303 Acer truncatum HOM05D005761 ORTHO05D007286 4.6e-31 137.9 98 67.3
Prupe.6G357100 Prunus persica HOM05D005761 ORTHO05D007286 4.6e-31 137.9 98 69.4
Nn3g18106 Nelumbo nucifera HOM05D005761 ORTHO05D007286 6.1e-31 137.5 98 69.4
PSO170G4248 Papaver somniferum HOM05D005761 ORTHO05D007286 7.9e-31 137.1 98 69.4
Cc04_g07670 Coffea canephora HOM05D005761 ORTHO05D007286 1.0e-30 136.7 98 67.3
PSO063G2446 Papaver somniferum HOM05D005761 ORTHO05D007286 1.0e-30 136.7 98 69.4
CiPaw.01G235200 Carya illinoinensis HOM05D005761 ORTHO05D007286 1.4e-30 136.3 98 69.4
Os02g0275100 Oryza sativa ssp. japonica HOM05D005761 ORTHO05D007286 1.4e-30 136.3 98 66.3
Sc12g0009490 Simmondsia chinensis HOM05D005761 ORTHO05D007286 3.0e-30 135.2 98 67.3
EL10Ac9g22057 Beta vulgaris HOM05D005761 ORTHO05D007286 3.9e-30 134.8 98 70.4
CSS0019454 Camellia sinensis var. sinensis HOM05D005761 ORTHO05D007286 3.9e-30 134.8 98 67.3
CSS0045926 Camellia sinensis var. sinensis HOM05D005761 ORTHO05D007286 3.9e-30 134.8 98 67.3
Lalb_Chr25g0280001 Lupinus albus HOM05D005761 ORTHO05D007286 3.9e-30 134.8 98 67.3
Cpa.g.sc33.106 Carica papaya HOM05D005761 ORTHO05D007286 5.1e-30 134.4 98 67.3
Nitab4.5_0001315g0120 Nicotiana tabacum HOM05D005761 ORTHO05D007286 5.1e-30 134.4 98 66.3
Nitab4.5_0007217g0020 Nicotiana tabacum HOM05D005761 ORTHO05D007286 5.1e-30 134.4 98 66.3
SGA_v2.0_scaffold5G02550 Striga asiatica HOM05D005761 ORTHO05D007286 5.1e-30 134.4 98 68.4
SGA_v2.0_scaffold80G25854 Striga asiatica HOM05D005761 ORTHO05D007286 5.1e-30 134.4 98 68.4
Cpa.g.sc37.42 Carica papaya HOM05D005761 ORTHO05D007286 6.7e-30 134.0 102 65.7
FvH4_6g31840 Fragaria vesca HOM05D005761 ORTHO05D007286 6.7e-30 134.0 98 65.3
FAN14G3194 Fragaria x ananassa HOM05D005761 ORTHO05D007286 6.7e-30 134.0 98 65.3
MD17G1190700 Malus domestica HOM05D005761 ORTHO05D007286 6.7e-30 134.0 98 66.3
RcHm_v2.0_Chr2g0139151 Rosa chinensis HOM05D005761 ORTHO05D007286 6.7e-30 134.0 98 65.3
Actinidia32723 Actinidia chinensis HOM05D005761 ORTHO05D007286 8.8e-30 133.7 98 69.4
Ah.01g005570 Amaranthus hybridus HOM05D005761 ORTHO05D001133 8.8e-30 133.7 120 59.2
MSTRG.22659 Avicennia marina HOM05D005761 ORTHO05D007286 1.1e-29 133.3 98 66.3
Lj9C509G5 Lonicera japonica HOM05D003521 ORTHO05D000476 1.1e-29 133.3 99 66.7
AUR62016504 Chenopodium quinoa HOM05D005761 ORTHO05D007286 1.5e-29 132.9 100 64.0
Peaxi162Scf00015g00136 Petunia axillaris HOM05D005761 ORTHO05D007286 1.5e-29 132.9 98 66.3
QL05p021523 Quercus lobata HOM05D005761 ORTHO05D007286 1.5e-29 132.9 98 67.3
Solyc03g120610.3 Solanum lycopersicum HOM05D005761 ORTHO05D007286 1.5e-29 132.9 98 64.3
Sopen00g008190 Solanum pennellii HOM05D005761 ORTHO05D007286 1.5e-29 132.9 98 64.3
GSVIVG01017058001 Vitis vinifera HOM05D005761 ORTHO05D007286 1.5e-29 132.9 98 63.3
Haze_16351 Corylus avellana HOM05D005761 ORTHO05D007286 1.9e-29 132.5 98 68.4
FAN09G1691 Fragaria x ananassa HOM05D005761 ORTHO05D007286 1.9e-29 132.5 98 64.3
CDE05G3104 Ceratophyllum demersum HOM05D005761 ORTHO05D007286 2.5e-29 132.1 98 65.3
Phvul.010G148400 Phaseolus vulgaris HOM05D005761 ORTHO05D007286 2.5e-29 132.1 98 68.4
Sabra01G0154700 Salix brachista HOM05D005761 ORTHO05D007286 2.5e-29 132.1 98 65.3
Zm00001eb237310 Zea mays HOM05D005761 ORTHO05D007286 2.5e-29 132.1 98 62.2
MBI01_g30861_MAGBIO Magnolia biondii HOM05D005761 ORTHO05D007286 3.3e-29 131.7 98 65.3
Nitab4.5_0006311g0030 Nicotiana tabacum HOM05D005761 ORTHO05D007286 3.3e-29 131.7 98 64.3
PGSC0003DMG401002548 Solanum tuberosum HOM05D005761 ORTHO05D007286 3.3e-29 131.7 98 64.3
ATR0315G131 Amborella trichopoda HOM05D005761 ORTHO05D007286 4.3e-29 131.3 98 63.3
Cfa002100 Carpinus fangiana HOM05D005761 ORTHO05D001133 4.3e-29 131.3 98 67.3
Cfa014791 Carpinus fangiana HOM05D005761 ORTHO05D007286 4.3e-29 131.3 98 67.3
Oeu059462.1 Olea europaea HOM05D005761 ORTHO05D007286 4.3e-29 131.3 97 67.0
CAN.G438.30 Capsicum annuum HOM05D005761 ORTHO05D007286 5.7e-29 131.0 98 62.2
Cfa014792 Carpinus fangiana HOM05D005761 ORTHO05D007286 5.7e-29 131.0 98 66.3
FAN05G4602 Fragaria x ananassa HOM05D005761 ORTHO05D007286 5.7e-29 131.0 98 64.3
HanXRQChr09g0275451 Helianthus annuus HOM05D005761 ORTHO05D007286 5.7e-29 131.0 98 61.2
Peaxi162Scf00029g02413 Petunia axillaris HOM05D005761 ORTHO05D007286 5.7e-29 131.0 93 67.7
unitig_37.g12255 Utricularia gibba HOM05D005761 ORTHO05D007286 7.4e-29 130.6 98 62.2
Rhsim09G0202300 Rhododendron simsii HOM05D005761 ORTHO05D007286 9.7e-29 130.2 98 65.3
Lsat_1_v5_gn_4_103261 Lactuca sativa HOM05D005761 ORTHO05D007286 1.3e-28 129.8 98 61.2
VMungo0464G1667 Vigna mungo HOM05D005761 ORTHO05D007286 1.3e-28 129.8 98 65.3
PGR102G2101 Punica granatum HOM05D005761 ORTHO05D007286 2.2e-28 129.0 98 65.3
TAR624G1072 Trochodendron aralioides HOM05D005761 ORTHO05D007286 2.2e-28 129.0 96 66.7
HPP92_024576 Vanilla planifolia HOM05D005761 ORTHO05D007286 2.2e-28 129.0 98 64.3
Potri.003G052000 Populus trichocarpa HOM05D005761 ORTHO05D007286 3.7e-28 128.3 98 63.3
Oeu000460.1 Olea europaea HOM05D005761 ORTHO05D007286 4.8e-28 127.9 105 61.9
SHI11001 Sapria himalayana HOM05D005761 ORTHO05D007286 4.8e-28 127.9 94 66.0
PGR102G0188 Punica granatum HOM05D005761 ORTHO05D007286 1.1e-27 126.7 98 64.3
Thhalv10008971m.g Eutrema salsugineum HOM05D005761 ORTHO05D007286 9.1e-27 123.6 98 64.3
RcHm_v2.0_Chr2g0139101 Rosa chinensis HOM05D005761 ORTHO05D007286 9.1e-27 123.6 95 61.1
Sp1g13540 Schrenkiella parvula HOM05D005761 ORTHO05D007286 9.1e-27 123.6 98 63.3
Migut.I00937 Erythranthe guttata HOM05D005761 ORTHO05D007286 1.2e-26 123.2 98 61.2
THA.LOC104813554 Tarenaya hassleriana HOM05D005761 ORTHO05D007286 1.5e-26 122.9 98 61.2
Aa31LG5G21060 Aethionema arabicum HOM05D000113 ORTHO05D001108 5.9e-26 120.9 98 65.3
Carub.0001s1498 Capsella rubella HOM05D005761 ORTHO05D007286 1.0e-25 120.2 98 61.2
ECA232G2351 Erigeron canadensis HOM05D005761 ORTHO05D007286 1.3e-25 119.8 98 54.1
SalBow2G2609 Salvia bowleyana HOM05D005761 ORTHO05D007286 1.3e-25 119.8 94 60.6
BcaB03g13070 Brassica carinata HOM05D005761 ORTHO05D007286 2.9e-25 118.6 98 60.2
BcaC05g25451 Brassica carinata HOM05D005761 ORTHO05D007286 1.1e-24 116.7 98 60.2
A06p11220 Brassica napus HOM05D005761 ORTHO05D007286 1.1e-24 116.7 98 60.2
C05p13350 Brassica napus HOM05D005761 ORTHO05D007286 1.1e-24 116.7 98 60.2
BraA06t24302Z Brassica rapa HOM05D005761 ORTHO05D007286 1.1e-24 116.7 98 60.2
AL1G27310 Arabidopsis lyrata HOM05D005761 ORTHO05D007286 1.4e-24 116.3 98 60.2
CARHR015750 Cardamine hirsuta HOM05D005761 ORTHO05D007286 1.9e-24 115.9 98 60.2
BolC5t30072H Brassica oleracea HOM05D005761 ORTHO05D007286 2.5e-24 115.5 98 59.2
BcaC07g38774 Brassica carinata HOM05D005761 ORTHO05D007286 9.4e-24 113.6 98 58.2
C08p17060 Brassica napus HOM05D000103 ORTHO05D000049 1.2e-23 113.2 98 58.2
BolC8t49332H Brassica oleracea HOM05D005761 ORTHO05D007286 1.2e-23 113.2 98 58.2
A08p31680 Brassica napus HOM05D005761 ORTHO05D007286 2.7e-23 112.1 98 58.2
BraA08t35090Z Brassica rapa HOM05D005761 ORTHO05D007286 2.7e-23 112.1 98 58.2
AT1G15220 Arabidopsis thaliana HOM05D005761 ORTHO05D007286 4.7e-23 111.3 98 58.2
TAR636G0897 Trochodendron aralioides HOM05D005761 ORTHO05D007286 4.8e-20 101.3 89 57.3
CANSAT56G0921 Cannabis sativa HOM05D005761 ORTHO05D007286 1.8e-19 99.4 101 51.5
SEGI_40479 Sequoiadendron giganteum HOM05D005761 ORTHO05D007286 9.1e-19 97.1 91 47.3
Duzib160G0104 Durio zibethinus HOM05D005761 ORTHO05D007286 1.7e-17 92.8 98 53.1
Sopen03g039470 Solanum pennellii HOM05D005761 ORTHO05D007286 3.8e-17 91.7 59 71.2
HanXRQChr11g0333491 Helianthus annuus HOM05D005761 ORTHO05D007286 8.5e-17 90.5 111 44.1
HanXRQChr08g0232791 Helianthus annuus HOM05D005761 ORTHO05D007286 4.2e-16 88.2 112 43.8
Pp3c3_29950 Physcomitrium patens HOM05D005761 ORTHO05D007286 9.7e-13 77.0 94 42.6
Glyma.07G019200 Glycine max HOM05D005761 ORTHO05D007286 1.2e-10 70.1 60 61.7
Mapoly0033s0089 Marchantia polymorpha HOM05D005761 ORTHO05D007286 1.2e-10 70.1 90 38.9
HanXRQChr05g0136521 Helianthus annuus HOM05D005761 ORTHO05D007286 3.2e-08 62.0 48 64.6
HanXRQChr10g0301331 Helianthus annuus HOM05D005761 ORTHO05D007286 9.4e-08 60.5 44 68.2
CBR_g32010 Chara braunii HOM05D005761 ORTHO05D007286 3.6e-07 58.5 98 37.8
Rhsim08G0203300 Rhododendron simsii HOM05D005761 ORTHO05D007286 8.0e-07 57.4 59 52.5


User provided reference genes

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