Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0020054 Sechium edule HOM05D005137 ORTHO05D006478 1.0e-85 320.1 164 100.0
MELO3C024753.2 Cucumis melo HOM05D005137 ORTHO05D006478 1.3e-77 293.1 164 87.8
CsaV3_2G035870 Cucumis sativus L. HOM05D005137 ORTHO05D006478 5.0e-77 291.2 164 87.2
ClCG02G007860 Citrullus lanatus HOM05D005137 ORTHO05D006478 2.4e-71 272.3 160 84.4
Prupe.8G054100 Prunus persica HOM05D005137 ORTHO05D006478 8.5e-69 263.8 164 79.3
Glyma.16G156600 Glycine max HOM05D005137 ORTHO05D006478 2.5e-68 262.3 164 77.4
TWI34G1514 Tripterygium wilfordii HOM05D005137 ORTHO05D006478 4.2e-68 261.5 164 78.0
Glyma.09G166500 Glycine max HOM05D005137 ORTHO05D006478 7.2e-68 260.8 164 77.4
Manes.02G220500 Manihot esculenta HOM05D005137 ORTHO05D006478 2.1e-67 259.2 164 77.4
Glyma.02G074600 Glycine max HOM05D005137 ORTHO05D006478 2.7e-67 258.8 164 76.2
arahy.Tifrunner.gnm1.ann1.UQ6TGS Arachis hypogaea HOM05D005137 ORTHO05D006478 4.7e-67 258.1 164 75.6
arahy.Tifrunner.gnm1.ann1.RF3N8D Arachis hypogaea HOM05D005137 ORTHO05D006478 8.0e-67 257.3 164 74.4
C06p11610 Brassica napus HOM05D005137 ORTHO05D006478 8.8e-66 253.8 164 73.8
Cfa018205 Carpinus fangiana HOM05D005137 ORTHO05D006478 8.8e-66 253.8 164 75.0
CANSAT25G3131 Cannabis sativa HOM05D005137 ORTHO05D006478 1.5e-65 253.1 164 74.4
TWI32G0414 Tripterygium wilfordii HOM05D005137 ORTHO05D006478 2.0e-65 252.7 164 76.2
Ca_16220_v3 Cicer arietinum L. HOM05D005137 ORTHO05D006478 2.6e-65 252.3 164 75.0
AT1G34350 Arabidopsis thaliana HOM05D005137 ORTHO05D006478 3.3e-65 251.9 164 73.8
MD10G1046500 Malus domestica HOM05D005137 ORTHO05D006478 3.3e-65 251.9 164 76.2
Carub.0001s3248 Capsella rubella HOM05D005137 ORTHO05D006478 4.4e-65 251.5 164 73.2
Thhalv10008956m.g Eutrema salsugineum HOM05D005137 ORTHO05D006478 4.4e-65 251.5 164 73.8
Gohir.A05G250700 Gossypium hirsutum HOM05D005137 ORTHO05D006478 4.4e-65 251.5 164 75.6
Lj1g0006567 Lotus japonicus HOM05D005137 ORTHO05D006478 5.7e-65 251.1 164 73.2
BcaB07g33131 Brassica carinata HOM05D005137 ORTHO05D006478 7.5e-65 250.8 164 73.2
Gohir.D05G253100 Gossypium hirsutum HOM05D005137 ORTHO05D006478 7.5e-65 250.8 164 75.0
A08p08280 Brassica napus HOM05D005137 ORTHO05D006478 9.7e-65 250.4 164 73.2
RcHm_v2.0_Chr6g0272201 Rosa chinensis HOM05D005137 ORTHO05D006478 1.3e-64 250.0 164 72.6
Sp1g29570 Schrenkiella parvula HOM05D005137 ORTHO05D006478 1.3e-64 250.0 164 72.6
THA.LOC104813096 Tarenaya hassleriana HOM05D005137 ORTHO05D006478 1.3e-64 250.0 164 73.2
AL1G48900 Arabidopsis lyrata HOM05D005137 ORTHO05D006478 1.7e-64 249.6 164 73.2
BcaC08g43783 Brassica carinata HOM05D005137 ORTHO05D006478 1.7e-64 249.6 164 72.0
BolC6t36295H Brassica oleracea HOM05D005137 ORTHO05D006478 1.7e-64 249.6 164 72.0
BcaC05g27759 Brassica carinata HOM05D005137 ORTHO05D006478 2.2e-64 249.2 164 72.0
C05p37550 Brassica napus HOM05D005137 ORTHO05D006478 2.2e-64 249.2 164 72.0
Gorai.009G263900 Gossypium raimondii HOM05D005137 ORTHO05D006478 2.2e-64 249.2 164 74.4
Duzib177G1119 Durio zibethinus HOM05D005137 ORTHO05D006478 2.8e-64 248.8 164 74.4
Peaxi162Scf00020g02234 Petunia axillaris HOM05D005137 ORTHO05D006478 2.8e-64 248.8 164 72.0
Ciclev10002730m.g Citrus clementina HOM05D005137 ORTHO05D006478 3.7e-64 248.4 164 72.0
CANSAT64G0780 Cannabis sativa HOM05D005137 ORTHO05D006478 4.8e-64 248.1 164 73.2
Phvul.004G084500 Phaseolus vulgaris HOM05D005137 ORTHO05D006478 4.8e-64 248.1 164 72.6
Lalb_Chr01g0009971 Lupinus albus HOM05D005137 ORTHO05D006478 6.3e-64 247.7 164 73.2
Medtr3g078663 Medicago truncatula HOM05D005137 ORTHO05D006478 6.3e-64 247.7 164 74.4
Thecc.08G201900 Theobroma cacao HOM05D005137 ORTHO05D006478 6.3e-64 247.7 164 74.4
VMungo0464G1968 Vigna mungo HOM05D005137 ORTHO05D006478 8.2e-64 247.3 164 71.3
BcaB03g13677 Brassica carinata HOM05D005137 ORTHO05D006478 1.1e-63 246.9 164 71.3
Cpa.g.sc66.58 Carica papaya HOM05D005137 ORTHO05D006478 1.1e-63 246.9 164 70.7
Sabra13G0097100 Salix brachista HOM05D005137 ORTHO05D006478 1.1e-63 246.9 166 72.3
Sc01g0001710 Simmondsia chinensis HOM05D005137 ORTHO05D006478 1.4e-63 246.5 164 72.0
Sopen08g021770 Solanum pennellii HOM05D005137 ORTHO05D006478 1.4e-63 246.5 164 72.0
CiPaw.15G082700 Carya illinoinensis HOM05D005137 ORTHO05D006478 1.8e-63 246.1 164 75.0
Solyc08g067830.3 Solanum lycopersicum HOM05D005137 ORTHO05D006478 1.8e-63 246.1 164 72.0
Duzib116G0364 Durio zibethinus HOM05D005137 ORTHO05D006478 2.4e-63 245.7 164 73.2
Lalb_Chr03g0035851 Lupinus albus HOM05D005137 ORTHO05D006478 2.4e-63 245.7 164 74.4
Atru.chr13.1812 Acer truncatum HOM05D005137 ORTHO05D006478 4.1e-63 245.0 164 72.6
PGSC0003DMG400033629 Solanum tuberosum HOM05D005137 ORTHO05D006478 4.1e-63 245.0 164 71.3
Hund27077 Selenicereus undatus HOM05D005137 ORTHO05D006478 5.3e-63 244.6 162 72.2
CAN.G623.4 Capsicum annuum HOM05D005137 ORTHO05D006478 9.1e-63 243.8 164 70.7
Eucgr.F04136 Eucalyptus grandis HOM05D005137 ORTHO05D006478 9.1e-63 243.8 164 71.3
CSS0031544 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 1.2e-62 243.4 164 73.2
CSS0044586 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 1.2e-62 243.4 164 73.2
MD05G1040400 Malus domestica HOM05D005137 ORTHO05D006478 1.2e-62 243.4 164 73.8
THA.LOC104806781 Tarenaya hassleriana HOM05D005137 ORTHO05D006478 2.7e-62 242.3 164 70.1
Aa31LG6G8420 Aethionema arabicum HOM05D005137 ORTHO05D006478 3.5e-62 241.9 173 67.1
Potri.013G114800 Populus trichocarpa HOM05D005137 ORTHO05D006478 3.5e-62 241.9 166 70.5
AUR62023580 Chenopodium quinoa HOM05D005137 ORTHO05D006478 4.5e-62 241.5 159 73.0
Psat5g109360 Pisum sativum HOM05D005137 ORTHO05D006478 1.0e-61 240.4 159 73.0
Haze_17904 Corylus avellana HOM05D005137 ORTHO05D006478 1.3e-61 240.0 188 66.0
Potri.019G085500 Populus trichocarpa HOM05D005137 ORTHO05D006478 1.3e-61 240.0 166 69.9
CSS0049152 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 1.7e-61 239.6 164 72.0
PGR004G0411 Punica granatum HOM05D005137 ORTHO05D006478 2.2e-61 239.2 164 69.5
Oeu039592.1 Olea europaea HOM05D005137 ORTHO05D006478 2.9e-61 238.8 164 70.1
SalBow6G2431 Salvia bowleyana HOM05D005137 ORTHO05D006478 2.9e-61 238.8 164 68.9
SalBow6G5561 Salvia bowleyana HOM05D005137 ORTHO05D006478 2.9e-61 238.8 164 68.9
ECA248G1561 Erigeron canadensis HOM05D005137 ORTHO05D006478 4.2e-60 235.0 164 66.5
HanXRQChr01g0027021 Helianthus annuus HOM05D005137 ORTHO05D006478 5.5e-60 234.6 164 65.2
EL10Ac1g00786 Beta vulgaris HOM05D005137 ORTHO05D006478 7.2e-60 234.2 164 66.5
BolC5t32496H Brassica oleracea HOM05D005137 ORTHO05D006478 9.4e-60 233.8 191 61.3
BolC8t47866H Brassica oleracea HOM05D005137 ORTHO05D006478 9.4e-60 233.8 185 63.2
BraA08t32846Z Brassica rapa HOM05D005137 ORTHO05D006478 9.4e-60 233.8 193 61.7
Migut.N03340 Erythranthe guttata HOM05D005137 ORTHO05D006478 9.4e-60 233.8 164 67.7
Oeu021007.1 Olea europaea HOM05D005137 ORTHO05D006478 9.4e-60 233.8 164 68.9
Lsat_1_v5_gn_1_53501 Lactuca sativa HOM05D005137 ORTHO05D006478 1.6e-59 233.0 164 67.7
Cc10_g11140 Coffea canephora HOM05D005137 ORTHO05D006478 3.6e-59 231.9 164 67.1
SGA_v2.0_scaffold149G36609 Striga asiatica HOM05D005137 ORTHO05D006478 4.7e-59 231.5 164 67.7
DCAR_006419 Daucus carota HOM05D005137 ORTHO05D006478 1.0e-58 230.3 164 64.6
PSO210G7193 Papaver somniferum HOM05D005137 ORTHO05D006478 1.8e-58 229.6 164 65.9
Nn5g27795 Nelumbo nucifera HOM05D005137 ORTHO05D006478 2.3e-58 229.2 164 64.0
Aqoxy5G03157 Aquilegia oxysepala HOM05D005137 ORTHO05D006478 4.0e-58 228.4 164 65.9
FvH4_2g12231 Fragaria vesca HOM05D005137 ORTHO05D006478 6.8e-58 227.6 164 66.5
FAN20G1842 Fragaria x ananassa HOM05D005137 ORTHO05D006478 8.8e-58 227.3 164 66.5
Medtr1g083990 Medicago truncatula HOM05D001444 ORTHO05D006478 8.8e-58 227.3 174 67.2
MSTRG.22441 Avicennia marina HOM05D005137 ORTHO05D006478 1.2e-57 226.9 164 65.2
Dinv41687 Davidia involucrata HOM05D005137 ORTHO05D006478 1.2e-57 226.9 164 66.5
PSO238G0018 Papaver somniferum HOM05D005137 ORTHO05D006478 2.0e-57 226.1 164 64.6
Nitab4.5_0000125g0160 Nicotiana tabacum HOM05D005137 ORTHO05D006478 2.6e-57 225.7 164 65.9
TAR628G0708 Trochodendron aralioides HOM05D005137 ORTHO05D006478 2.6e-57 225.7 164 63.4
Hund16805 Selenicereus undatus HOM05D005137 ORTHO05D006478 3.4e-57 225.3 164 65.9
unitig_52.g17664 Utricularia gibba HOM05D005137 ORTHO05D006478 4.4e-57 224.9 164 64.6
GSVIVG01023270001 Vitis vinifera HOM05D005137 ORTHO05D006478 1.3e-56 223.4 164 64.6
FAN27G0578 Fragaria x ananassa HOM05D005137 ORTHO05D006478 1.7e-56 223.0 164 65.9
Zm00001eb174480 Zea mays HOM05D005137 ORTHO05D006478 2.0e-54 216.1 164 60.4
CDE05G2425 Ceratophyllum demersum HOM05D005137 ORTHO05D006478 4.5e-54 214.9 164 61.6
HPP92_025038 Vanilla planifolia HOM05D005137 ORTHO05D006478 1.5e-52 209.9 164 59.8
Os08g0104100 Oryza sativa ssp. japonica HOM05D005137 ORTHO05D006478 4.2e-52 208.4 162 58.6
PSO063G4111 Papaver somniferum HOM05D005137 ORTHO05D006478 3.6e-51 205.3 171 60.2
ATR0584G018 Amborella trichopoda HOM05D005137 ORTHO05D006478 4.7e-51 204.9 164 61.6
CARHR033800 Cardamine hirsuta HOM05D005137 ORTHO05D006478 2.3e-50 202.6 133 73.7
SEGI_32859 Sequoiadendron giganteum HOM05D005137 ORTHO05D006478 1.0e-45 187.2 170 57.6
SEGI_32911 Sequoiadendron giganteum HOM05D005137 ORTHO05D006478 1.0e-45 187.2 170 57.6
Os05g0432500 Oryza sativa ssp. japonica HOM05D005137 ORTHO05D006478 5.0e-45 184.9 164 51.2
AUR62004663 Chenopodium quinoa HOM05D005137 ORTHO05D006478 2.8e-43 179.1 169 57.4
FAN24G3447 Fragaria x ananassa HOM05D004393 ORTHO05D004897 2.8e-43 179.1 132 65.2
COL.COLO4_35446 Corchorus olitorius HOM05D005137 ORTHO05D006478 3.6e-43 178.7 221 49.3
Nitab4.5_0006579g0080 Nicotiana tabacum HOM05D005137 ORTHO05D006478 1.8e-42 176.4 164 54.3
unitig_62.g23355 Utricularia gibba HOM05D005137 ORTHO05D006478 6.4e-40 167.9 167 52.1
Pp3c12_6500 Physcomitrium patens HOM05D005137 ORTHO05D006478 2.4e-39 166.0 168 48.8
Glyma.16G216600 Glycine max HOM05D005137 ORTHO05D006478 3.5e-38 162.2 117 67.5
AagrBONN_evm.TU.Sc2ySwM_117.1441 Anthoceros agrestis HOM05D005137 ORTHO05D006478 6.6e-37 157.9 169 45.6
Mapoly0118s0004 Marchantia polymorpha HOM05D005137 ORTHO05D006478 1.1e-34 150.6 168 46.4
BraA09t38756Z Brassica rapa HOM05D005137 ORTHO05D006478 5.2e-34 148.3 98 70.4
CAN.G21.12 Capsicum annuum HOM05D005137 ORTHO05D006478 1.3e-32 143.7 98 70.4
SMO115G0137 Selaginella moellendorffii HOM05D005137 ORTHO05D006478 1.3e-32 143.7 122 51.6
SMO304G0014 Selaginella moellendorffii HOM05D005137 ORTHO05D006478 1.3e-32 143.7 158 48.7
QL02p034107 Quercus lobata HOM05D005137 ORTHO05D006478 6.0e-30 134.8 82 76.8
Peaxi162Scf00105g01425 Petunia axillaris HOM05D005137 ORTHO05D006478 1.5e-28 130.2 91 70.3
QL02p034100 Quercus lobata HOM05D005137 ORTHO05D006478 1.1e-26 124.0 84 70.2
Lj7P297T42 Lonicera japonica HOM05D005137 ORTHO05D006478 1.8e-26 123.2 83 71.1
Rhsim06G0097400 Rhododendron simsii HOM05D005137 ORTHO05D006478 8.9e-26 120.9 82 68.3
Actinidia32879 Actinidia chinensis HOM05D005137 ORTHO05D006478 7.5e-25 117.9 94 62.8
Cre02.g142150 Chlamydomonas reinhardtii HOM05D005137 ORTHO05D006478 4.1e-23 112.1 156 40.4
arahy.Tifrunner.gnm1.ann1.T3MISZ Arachis hypogaea HOM05D005137 ORTHO05D006478 4.6e-22 108.6 66 75.8
SGA_v2.0_scaffold386G50489 Striga asiatica HOM05D005137 ORTHO05D006478 7.8e-22 107.8 99 56.6
Dinv30978 Davidia involucrata HOM05D005137 ORTHO05D006478 4.7e-19 98.6 69 65.2
BcaB04g17880 Brassica carinata HOM05D005137 ORTHO05D006478 4.4e-17 92.0 57 66.7
Zm00001eb289230 Zea mays HOM05D005137 ORTHO05D006478 4.4e-17 92.0 82 53.7
MCO05G717 Micromonas commoda HOM05D005137 ORTHO05D006478 5.8e-17 91.7 119 36.1
arahy.Tifrunner.gnm1.ann1.T6GVNL Arachis hypogaea HOM05D005137 ORTHO05D006478 1.3e-13 80.5 51 74.5
TPR.G27590 Trifolium pratense HOM05D005137 ORTHO05D006478 6.6e-13 78.2 47 76.6
Lj7C297T10 Lonicera japonica HOM05D005137 ORTHO05D006478 1.1e-12 77.4 47 72.3
vmacro12499 Vaccinium macrocarpon HOM05D005137 ORTHO05D006478 1.9e-12 76.6 46 71.7
arahy.Tifrunner.gnm1.ann1.84LCSI Arachis hypogaea HOM05D005137 ORTHO05D013367 3.3e-12 75.9 46 76.1
arahy.Tifrunner.gnm1.ann1.A3G9LL Arachis hypogaea HOM05D005137 ORTHO05D006478 4.7e-11 72.0 48 70.8
SGA_v2.0_scaffold1053G53813 Striga asiatica HOM05D005137 ORTHO05D006478 2.6e-09 66.2 99 42.4
Medtr2g069440 Medicago truncatula HOM05D003000 ORTHO05D003699 9.3e-07 57.8 44 59.1


User provided reference genes

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