Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0020047 Sechium edule HOM05D005796 ORTHO05D007054 3.8e-137 491.5 251 100.0
MELO3C002210.2 Cucumis melo HOM05D005796 ORTHO05D007054 1.9e-104 382.9 265 78.9
CsaV3_1G007940 Cucumis sativus L. HOM05D005796 ORTHO05D007054 3.1e-102 375.6 267 77.5
ClCG01G014370 Citrullus lanatus HOM05D005796 ORTHO05D007054 1.7e-100 369.8 264 76.9
GSVIVG01008066001 Vitis vinifera HOM05D005796 ORTHO05D007054 2.1e-74 283.1 190 77.9
TWI60G1143 Tripterygium wilfordii HOM05D005796 ORTHO05D007054 7.9e-74 281.2 227 68.3
Dinv38663 Davidia involucrata HOM05D005796 ORTHO05D007054 5.1e-73 278.5 263 60.5
Solyc03g113280.3 Solanum lycopersicum HOM05D005796 ORTHO05D007054 6.7e-73 278.1 226 67.7
Prupe.5G185800 Prunus persica HOM05D005796 ORTHO05D007054 1.1e-72 277.3 251 63.3
TAR481G0014 Trochodendron aralioides HOM05D005796 ORTHO05D007054 1.1e-72 277.3 178 79.2
Thecc.03G078500 Theobroma cacao HOM05D005796 ORTHO05D007054 1.9e-72 276.6 248 62.1
Hma1.2p1_0002F.1_g003270 Hydrangea macrophylla HOM05D005796 ORTHO05D007054 4.3e-72 275.4 197 73.1
Nitab4.5_0004605g0110 Nicotiana tabacum HOM05D005796 ORTHO05D007054 9.6e-72 274.2 180 76.7
PGSC0003DMG400025332 Solanum tuberosum HOM05D005796 ORTHO05D007054 9.6e-72 274.2 226 69.5
Gohir.A07G065400 Gossypium hirsutum HOM05D005796 ORTHO05D007054 1.3e-71 273.9 244 62.7
Manes.14G074300 Manihot esculenta HOM05D005796 ORTHO05D007054 2.1e-71 273.1 191 72.3
Peaxi162Scf00009g00426 Petunia axillaris HOM05D005796 ORTHO05D007054 2.8e-71 272.7 192 75.0
Sopen03g032340 Solanum pennellii HOM05D005796 ORTHO05D007054 4.8e-71 271.9 226 66.8
Duzib084G0674 Durio zibethinus HOM05D005796 ORTHO05D007054 6.2e-71 271.6 259 57.5
Gorai.001G073800 Gossypium raimondii HOM05D005796 ORTHO05D007054 6.2e-71 271.6 244 62.7
CiPaw.11G037800 Carya illinoinensis HOM05D005796 ORTHO05D007054 1.1e-70 270.8 200 72.5
Actinidia04922 Actinidia chinensis HOM05D005796 ORTHO05D007054 1.8e-70 270.0 194 73.7
DCAR_026077 Daucus carota HOM05D005796 ORTHO05D007054 2.4e-70 269.6 238 62.6
RcHm_v2.0_Chr7g0180561 Rosa chinensis HOM05D005796 ORTHO05D007054 2.4e-70 269.6 252 57.5
Atru.chr9.2321 Acer truncatum HOM05D005796 ORTHO05D007054 3.1e-70 269.2 201 70.1
CANSAT80G0862 Cannabis sativa HOM05D005796 ORTHO05D007054 4.1e-70 268.9 190 75.3
AUR62008352 Chenopodium quinoa HOM05D005796 ORTHO05D007054 6.9e-70 268.1 234 63.7
Nitab4.5_0005402g0010 Nicotiana tabacum HOM05D005796 ORTHO05D007054 6.9e-70 268.1 178 75.8
arahy.Tifrunner.gnm1.ann1.U2VSD4 Arachis hypogaea HOM05D005796 ORTHO05D007054 1.0e-68 264.2 200 71.0
Ciclev10021819m.g Citrus clementina HOM05D005796 ORTHO05D007054 1.7e-68 263.5 190 71.1
arahy.Tifrunner.gnm1.ann1.NXA9BP Arachis hypogaea HOM05D005796 ORTHO05D007054 2.2e-68 263.1 221 65.6
MD14G1193900 Malus domestica HOM05D005796 ORTHO05D007054 2.2e-68 263.1 209 67.5
FAN13G2643 Fragaria x ananassa HOM05D005796 ORTHO05D007054 2.9e-68 262.7 180 72.2
Cpa.g.sc414.2 Carica papaya HOM05D005796 ORTHO05D007054 1.9e-67 260.0 176 75.6
Sc12g0006170 Simmondsia chinensis HOM05D005796 ORTHO05D007054 3.2e-67 259.2 193 71.5
FAN18G3372 Fragaria x ananassa HOM05D005796 ORTHO05D007054 4.2e-67 258.8 258 57.4
MD06G1187500 Malus domestica HOM05D005796 ORTHO05D007054 5.5e-67 258.5 209 66.5
EL10Ac5g10940 Beta vulgaris HOM05D005796 ORTHO05D007054 1.2e-66 257.3 191 69.1
Aqoxy3G00785 Aquilegia oxysepala HOM05D005796 ORTHO05D007054 2.1e-66 256.5 217 65.0
Migut.D01857 Erythranthe guttata HOM05D005796 ORTHO05D007054 3.5e-66 255.8 162 76.5
Hund02671 Selenicereus undatus HOM05D005796 ORTHO05D007054 3.5e-66 255.8 192 70.8
ATR0665G316 Amborella trichopoda HOM05D005796 ORTHO05D007054 4.6e-66 255.4 195 66.2
SGA_v2.0_scaffold7G04086 Striga asiatica HOM05D005796 ORTHO05D007054 6.1e-66 255.0 178 71.9
Glyma.17G096600 Glycine max HOM05D005796 ORTHO05D007054 1.0e-65 254.2 200 65.0
Potri.015G065500 Populus trichocarpa HOM05D005796 ORTHO05D007054 1.0e-65 254.2 179 72.6
FAN04G0326 Fragaria x ananassa HOM05D005796 ORTHO05D007054 1.8e-65 253.4 268 54.1
HanXRQChr02g0045201 Helianthus annuus HOM05D005796 ORTHO05D007054 2.3e-65 253.1 203 65.0
PSO478G3339 Papaver somniferum HOM05D005796 ORTHO05D007054 2.3e-65 253.1 234 59.8
FAN08G2559 Fragaria x ananassa HOM05D005796 ORTHO05D007054 3.9e-65 252.3 196 66.8
MSTRG.4407 Avicennia marina HOM05D005796 ORTHO05D007054 6.7e-65 251.5 218 60.1
Cc04_g15610 Coffea canephora HOM05D005796 ORTHO05D007054 6.7e-65 251.5 190 68.9
AL5G27300 Arabidopsis lyrata HOM05D005796 ORTHO05D007054 8.7e-65 251.1 191 65.4
PSO017G2472 Papaver somniferum HOM05D005796 ORTHO05D007054 1.1e-64 250.8 211 64.0
Lalb_Chr13g0303431 Lupinus albus HOM05D005796 ORTHO05D007054 2.5e-64 249.6 190 68.9
Phvul.003G193000 Phaseolus vulgaris HOM05D005796 ORTHO05D007054 4.3e-64 248.8 245 55.5
Gohir.D07G069900 Gossypium hirsutum HOM05D005796 ORTHO05D007054 5.7e-64 248.4 212 66.0
Sp5g14000 Schrenkiella parvula HOM05D005796 ORTHO05D007054 5.7e-64 248.4 198 65.7
VMungo1215G0702 Vigna mungo HOM05D005796 ORTHO05D007054 9.7e-64 247.7 189 66.7
ECA247G3495 Erigeron canadensis HOM05D005796 ORTHO05D007054 1.3e-63 247.3 181 69.6
BcaB05g22893 Brassica carinata HOM05D005796 ORTHO05D007054 2.2e-63 246.5 191 66.5
Eucgr.B00422 Eucalyptus grandis HOM05D005796 ORTHO05D007054 3.7e-63 245.7 162 76.5
TPR.G38380 Trifolium pratense HOM05D005796 ORTHO05D007054 6.3e-63 245.0 186 65.1
Carub.0005s1409 Capsella rubella HOM05D005796 ORTHO05D007054 2.4e-62 243.0 201 60.7
MBI03_g20464_MAGBIO Magnolia biondii HOM05D005796 ORTHO05D007054 2.4e-62 243.0 169 72.8
Lsat_1_v5_gn_1_10700 Lactuca sativa HOM05D005796 ORTHO05D007054 3.1e-62 242.7 182 68.7
Oeu048731.1 Olea europaea HOM05D005796 ORTHO05D007054 4.1e-62 242.3 203 62.1
Ca_21851_v3 Cicer arietinum L. HOM05D005796 ORTHO05D007054 9.0e-62 241.1 176 67.6
CARHR156700 Cardamine hirsuta HOM05D005796 ORTHO05D007054 1.2e-61 240.7 191 64.4
AT3G47980 Arabidopsis thaliana HOM05D005796 ORTHO05D007054 1.5e-61 240.4 240 56.7
CDE02G2117 Ceratophyllum demersum HOM05D005796 ORTHO05D007054 2.0e-61 240.0 160 73.8
A01p25720 Brassica napus HOM05D005796 ORTHO05D007054 3.4e-61 239.2 193 63.2
Aa31LG11G960 Aethionema arabicum HOM05D005796 ORTHO05D007054 5.9e-61 238.4 182 64.3
THA.LOC104821456 Tarenaya hassleriana HOM05D005796 ORTHO05D007054 7.7e-61 238.0 193 62.2
BraA06t25046Z Brassica rapa HOM05D005796 ORTHO05D007054 1.0e-60 237.7 166 70.5
BraA01t02488Z Brassica rapa HOM05D005796 ORTHO05D007054 1.3e-60 237.3 193 62.7
AT5G62720 Arabidopsis thaliana HOM05D005796 ORTHO05D007054 1.7e-60 236.9 180 64.4
AUR62021745 Chenopodium quinoa HOM05D005796 ORTHO05D007054 1.7e-60 236.9 144 83.3
C01p32410 Brassica napus HOM05D005796 ORTHO05D007054 2.2e-60 236.5 193 62.7
BolC1t03180H Brassica oleracea HOM05D005796 ORTHO05D007054 2.2e-60 236.5 193 62.7
Lj4g0017253 Lotus japonicus HOM05D005796 ORTHO05D007054 2.2e-60 236.5 190 63.2
Sabra15G0090700 Salix brachista HOM05D005796 ORTHO05D007054 3.8e-60 235.7 182 67.6
AL8G39690 Arabidopsis lyrata HOM05D005796 ORTHO05D007054 1.4e-59 233.8 185 64.3
BcaB02g09686 Brassica carinata HOM05D005796 ORTHO05D007054 1.4e-59 233.8 164 68.3
Os03g0684700 Oryza sativa ssp. japonica HOM05D005796 ORTHO05D007054 1.4e-59 233.8 153 73.9
Carub.0008s2345 Capsella rubella HOM05D005796 ORTHO05D007054 2.5e-59 233.0 225 54.2
Medtr4g107630 Medicago truncatula HOM05D005796 ORTHO05D007054 3.2e-59 232.6 176 65.3
A06p19660 Brassica napus HOM05D005796 ORTHO05D007054 5.5e-59 231.9 166 69.3
Sp2g25890 Schrenkiella parvula HOM05D005796 ORTHO05D007054 5.5e-59 231.9 192 63.0
Thhalv10004798m.g Eutrema salsugineum HOM05D005796 ORTHO05D007054 1.2e-58 230.7 165 66.7
A09p07830 Brassica napus HOM05D005796 ORTHO05D007054 1.6e-58 230.3 210 55.7
BraA09t36434Z Brassica rapa HOM05D005796 ORTHO05D007054 1.6e-58 230.3 210 55.7
BcaC04g23395 Brassica carinata HOM05D005796 ORTHO05D007054 2.1e-58 229.9 210 56.2
CARHR276510 Cardamine hirsuta HOM05D005796 ORTHO05D007054 2.7e-58 229.6 180 61.7
BolC9t53794H Brassica oleracea HOM05D005796 ORTHO05D007054 1.4e-57 227.3 165 65.5
SEGI_40570 Sequoiadendron giganteum HOM05D005796 ORTHO05D007054 1.4e-57 227.3 180 61.7
unitig_899.g15402 Utricularia gibba HOM05D003955 ORTHO05D004684 1.8e-57 226.9 242 51.7
BraA06t25896Z Brassica rapa HOM05D005796 ORTHO05D007054 2.3e-57 226.5 153 68.6
Zm00001eb217240 Zea mays HOM05D005796 ORTHO05D007054 3.3e-56 222.6 221 57.0
vmacro19431 Vaccinium macrocarpon HOM05D005796 ORTHO05D007054 7.4e-56 221.5 251 51.8
BcaC01g02511 Brassica carinata HOM05D005796 ORTHO05D007054 1.7e-55 220.3 153 67.3
BolC3t18656H Brassica oleracea HOM05D005796 ORTHO05D007054 1.7e-55 220.3 153 67.3
PGR083G2169 Punica granatum HOM05D005796 ORTHO05D007054 2.8e-55 219.5 208 62.5
BcaNung01383 Brassica carinata HOM05D005796 ORTHO05D007054 1.1e-54 217.6 197 56.3
unitig_0.g783 Utricularia gibba HOM05D005796 ORTHO05D007054 1.1e-54 217.6 162 65.4
Sed0018874 Sechium edule HOM05D005796 ORTHO05D007054 1.4e-54 217.2 174 70.1
Haze_07383 Corylus avellana HOM05D005796 ORTHO05D007054 1.2e-53 214.2 202 62.4
BcaB02g09676 Brassica carinata HOM05D005796 ORTHO05D007054 3.4e-53 212.6 139 71.9
A06p29510 Brassica napus HOM05D000012 ORTHO05D002455 4.5e-53 212.2 141 69.5
C03p64010 Brassica napus HOM05D000012 ORTHO05D002455 2.2e-52 209.9 141 68.8
Thhalv10010656m.g Eutrema salsugineum HOM05D005796 ORTHO05D007054 5.3e-46 188.7 191 56.0
PGR083G0992 Punica granatum HOM05D005796 ORTHO05D007054 2.6e-45 186.4 190 59.5
COL.COLO4_37386 Corchorus olitorius HOM05D005796 ORTHO05D007054 5.9e-45 185.3 122 77.9
SalBow7G0869 Salvia bowleyana HOM05D005796 ORTHO05D007054 6.5e-44 181.8 144 68.1
AagrBONN_evm.TU.Sc2ySwM_228.2536 Anthoceros agrestis HOM05D005796 ORTHO05D007054 1.1e-43 181.0 154 58.4
SMO356G0151 Selaginella moellendorffii HOM05D005796 ORTHO05D007054 1.5e-43 180.6 147 60.5
Mapoly0029s0058 Marchantia polymorpha HOM05D005796 ORTHO05D007054 1.9e-43 180.3 155 54.8
Lj9A459G48 Lonicera japonica HOM05D005796 ORTHO05D007054 4.2e-43 179.1 120 79.2
C09p08810 Brassica napus HOM05D005796 ORTHO05D007054 9.4e-43 177.9 173 56.1
Aa31LG4G16620 Aethionema arabicum HOM05D005796 ORTHO05D007054 9.7e-40 167.9 149 59.1
BcaB01g00857 Brassica carinata HOM05D005796 ORTHO05D007054 2.2e-39 166.8 116 70.7
QL10p015509 Quercus lobata HOM05D005796 ORTHO05D007054 2.7e-37 159.8 95 78.9
BcaC09g49836 Brassica carinata HOM05D005796 ORTHO05D007054 1.0e-36 157.9 143 58.0
BcaNung07157 Brassica carinata HOM05D005796 ORTHO05D007054 1.0e-36 157.9 143 58.0
Zm00001eb053360 Zea mays HOM05D005796 ORTHO05D007054 6.5e-36 155.2 141 60.3
CAN.G4519.1 Capsicum annuum HOM05D005796 ORTHO05D007054 9.8e-32 141.4 82 81.7
Sabra12G0050500 Salix brachista HOM05D005796 ORTHO05D007054 7.7e-29 131.7 219 43.8
QL10p015507 Quercus lobata HOM05D005796 ORTHO05D007054 2.2e-23 113.6 127 58.3
FvH4_5g15530 Fragaria vesca HOM05D005796 ORTHO05D007054 8.3e-23 111.7 143 50.3
MCO14G168 Micromonas commoda HOM05D005796 ORTHO05D007054 2.6e-16 90.1 154 33.1
Nn4g23032 Nelumbo nucifera HOM05D005796 ORTHO05D007054 4.1e-14 82.8 98 50.0
Glyma.05G030200 Glycine max HOM05D005796 ORTHO05D007054 7.8e-13 78.6 50 72.0
Cre06.g295826 Chlamydomonas reinhardtii HOM05D005796 ORTHO05D007054 6.6e-12 75.5 129 31.8
Rhsim08G0160200 Rhododendron simsii HOM05D005796 ORTHO05D007054 7.0e-06 55.5 49 63.3


User provided reference genes

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