Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0020027 Sechium edule HOM05D005555 ORTHO05D006923 3.2e-215 751.5 390 100.0
Sed0005603 Sechium edule HOM05D005555 ORTHO05D006923 6.6e-152 541.2 395 77.0
CsaV3_7G021840 Cucumis sativus L. HOM05D005555 ORTHO05D006923 9.8e-148 527.3 393 75.8
ClCG09G010820 Citrullus lanatus HOM05D005555 ORTHO05D006923 2.3e-144 516.2 439 69.9
Duzib268G1179 Durio zibethinus HOM05D005555 ORTHO05D006923 1.2e-137 493.8 396 70.5
GSVIVG01037655001 Vitis vinifera HOM05D005555 ORTHO05D006923 1.0e-136 490.7 396 68.7
Gorai.009G438400 Gossypium raimondii HOM05D005555 ORTHO05D006923 1.5e-135 486.9 396 69.2
Eucgr.F03470 Eucalyptus grandis HOM05D005555 ORTHO05D006923 3.3e-135 485.7 395 68.4
TWI39G0347 Tripterygium wilfordii HOM05D005555 ORTHO05D006923 3.6e-134 482.3 396 68.9
QL08p010014 Quercus lobata HOM05D005555 ORTHO05D006923 2.3e-133 479.6 394 68.3
CSS0046165 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 4.0e-133 478.8 396 68.2
Dinv22259 Davidia involucrata HOM05D005555 ORTHO05D006923 5.2e-133 478.4 396 68.2
MELO3C013162.2 Cucumis melo HOM05D005555 ORTHO05D006923 6.8e-133 478.0 404 70.0
TAR627G0887 Trochodendron aralioides HOM05D005555 ORTHO05D006923 5.8e-132 474.9 396 67.2
Sc03g0008570 Simmondsia chinensis HOM05D005555 ORTHO05D006923 4.1e-130 468.8 394 66.0
Nn1g07133 Nelumbo nucifera HOM05D005555 ORTHO05D006923 9.2e-130 467.6 396 65.4
RcHm_v2.0_Chr2g0139231 Rosa chinensis HOM05D005555 ORTHO05D006923 2.1e-129 466.5 397 67.3
Gohir.A04G016500 Gossypium hirsutum HOM05D005555 ORTHO05D006923 4.6e-129 465.3 396 67.2
Lj6g0008930 Lotus japonicus HOM05D005555 ORTHO05D006923 1.7e-128 463.4 396 66.2
Thecc.07G035900 Theobroma cacao HOM05D005555 ORTHO05D006923 3.9e-128 462.2 398 67.8
CiPaw.12G130100 Carya illinoinensis HOM05D005555 ORTHO05D006923 3.3e-127 459.1 396 66.7
Lalb_Chr20g0113831 Lupinus albus HOM05D005555 ORTHO05D006923 2.8e-126 456.1 397 64.0
Gohir.D05G369700 Gossypium hirsutum HOM05D005555 ORTHO05D006923 6.2e-126 454.9 396 65.9
Manes.15G071400 Manihot esculenta HOM05D005555 ORTHO05D006923 8.1e-126 454.5 394 66.8
Aqoxy1G02148 Aquilegia oxysepala HOM05D005555 ORTHO05D006923 1.4e-125 453.8 388 63.9
Glyma.08G316800 Glycine max HOM05D005555 ORTHO05D006923 1.4e-125 453.8 397 64.2
CiPaw.11G190000 Carya illinoinensis HOM05D005555 ORTHO05D006923 3.1e-125 452.6 396 65.4
Migut.M01757 Erythranthe guttata HOM05D005555 ORTHO05D006923 4.0e-125 452.2 391 64.7
Gorai.009G438500 Gossypium raimondii HOM05D005555 ORTHO05D006923 5.2e-125 451.8 396 65.4
VMungo0540G1244 Vigna mungo HOM05D005555 ORTHO05D006923 5.2e-125 451.8 397 65.2
Glyma.18G096300 Glycine max HOM05D005555 ORTHO05D006923 6.8e-125 451.4 397 65.2
Cpa.g.sc12.303 Carica papaya HOM05D005555 ORTHO05D006923 2.6e-124 449.5 396 65.4
Ciclev10008353m.g Citrus clementina HOM05D005555 ORTHO05D006923 2.6e-124 449.5 396 65.9
Phvul.006G044000 Phaseolus vulgaris HOM05D005555 ORTHO05D006923 2.6e-124 449.5 397 64.0
Hund15555 Selenicereus undatus HOM05D005555 ORTHO05D006923 7.6e-124 448.0 389 63.8
FAN02G4472 Fragaria x ananassa HOM05D005555 ORTHO05D006923 9.9e-124 447.6 396 64.4
PSO541G4760 Papaver somniferum HOM05D005555 ORTHO05D006923 1.7e-123 446.8 388 64.9
arahy.Tifrunner.gnm1.ann1.UR7PB1 Arachis hypogaea HOM05D005555 ORTHO05D006923 2.2e-123 446.4 397 64.5
FAN14G2902 Fragaria x ananassa HOM05D005555 ORTHO05D006923 2.2e-123 446.4 397 64.5
Actinidia35345 Actinidia chinensis HOM05D005555 ORTHO05D006923 2.9e-123 446.0 396 64.9
MSTRG.6923 Avicennia marina HOM05D005555 ORTHO05D006923 2.9e-123 446.0 396 64.4
Rhsim06G0217300 Rhododendron simsii HOM05D005555 ORTHO05D006923 2.9e-123 446.0 412 62.9
TPR.G33802 Trifolium pratense HOM05D005555 ORTHO05D006923 8.4e-123 444.5 406 63.3
CANSAT11G1088 Cannabis sativa HOM05D005555 ORTHO05D006923 1.9e-122 443.4 396 64.9
Solyc12g005050.2 Solanum lycopersicum HOM05D005555 ORTHO05D006923 2.4e-122 443.0 395 64.1
FAN05G3309 Fragaria x ananassa HOM05D005555 ORTHO05D006923 3.2e-122 442.6 396 63.4
arahy.Tifrunner.gnm1.ann1.P3VUIG Arachis hypogaea HOM05D005555 ORTHO05D006923 5.4e-122 441.8 397 64.0
MD17G1190200 Malus domestica HOM05D005555 ORTHO05D006923 5.4e-122 441.8 396 63.9
THA.LOC104817858 Tarenaya hassleriana HOM05D005555 ORTHO05D006923 7.1e-122 441.4 392 65.1
CSS0038584 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 2.1e-121 439.9 397 64.5
arahy.Tifrunner.gnm1.ann1.QY89IE Arachis hypogaea HOM05D005555 ORTHO05D006923 2.7e-121 439.5 397 63.7
Psat5g178680 Pisum sativum HOM05D005555 ORTHO05D006923 7.8e-121 438.0 392 64.3
Sopen12g001050 Solanum pennellii HOM05D005555 ORTHO05D006923 1.3e-120 437.2 395 63.3
PGSC0003DMG400027869 Solanum tuberosum HOM05D005555 ORTHO05D006923 1.7e-120 436.8 395 63.0
Dinv40759 Davidia involucrata HOM05D005555 ORTHO05D006923 3.9e-120 435.6 396 65.7
Peaxi162Scf00660g00816 Petunia axillaris HOM05D005555 ORTHO05D006923 5.1e-120 435.3 395 62.3
Lj8C169T24 Lonicera japonica HOM05D005555 ORTHO05D006923 6.6e-120 434.9 428 60.3
Nn1g03520 Nelumbo nucifera HOM05D005555 ORTHO05D006923 8.7e-120 434.5 396 60.6
SGA_v2.0_scaffold172G39000 Striga asiatica HOM05D005555 ORTHO05D006923 1.9e-119 433.3 407 61.2
Sp1g37550 Schrenkiella parvula HOM05D005555 ORTHO05D006923 2.5e-119 433.0 387 64.9
ECA240G0357 Erigeron canadensis HOM05D005555 ORTHO05D006923 9.6e-119 431.0 390 62.6
Prupe.3G065100 Prunus persica HOM05D005555 ORTHO05D006923 9.6e-119 431.0 392 63.5
BcaC08g43248 Brassica carinata HOM05D005555 ORTHO05D006923 1.6e-118 430.3 386 64.5
A06p02920 Brassica napus HOM05D005555 ORTHO05D006923 1.6e-118 430.3 386 64.5
C06p05960 Brassica napus HOM05D005555 ORTHO05D006923 1.6e-118 430.3 386 64.5
BolC6t35709H Brassica oleracea HOM05D005555 ORTHO05D006923 1.6e-118 430.3 386 64.5
BraA06t23497Z Brassica rapa HOM05D005555 ORTHO05D006923 1.6e-118 430.3 386 64.5
Potri.011G090800 Populus trichocarpa HOM05D005555 ORTHO05D006923 3.6e-118 429.1 397 64.5
BcaC08g43250 Brassica carinata HOM05D005555 ORTHO05D006923 1.8e-117 426.8 386 63.7
Nitab4.5_0008473g0010 Nicotiana tabacum HOM05D005555 ORTHO05D006923 1.8e-117 426.8 389 62.2
PSO675G4173 Papaver somniferum HOM05D005555 ORTHO05D006923 1.8e-117 426.8 388 62.9
AL1G58400 Arabidopsis lyrata HOM05D005555 ORTHO05D006923 3.1e-117 426.0 391 63.4
EL10Ac2g03146 Beta vulgaris HOM05D005555 ORTHO05D006923 4.0e-117 425.6 415 60.2
AT1G50710 Arabidopsis thaliana HOM05D005555 ORTHO05D006923 6.9e-117 424.9 391 63.4
MBI05_g12021_MAGBIO Magnolia biondii HOM05D005555 ORTHO05D006923 9.0e-117 424.5 384 63.8
Carub.0001s3974 Capsella rubella HOM05D005555 ORTHO05D006923 2.0e-116 423.3 391 63.4
Atru.chr2.3417 Acer truncatum HOM05D005555 ORTHO05D006923 2.6e-116 422.9 396 63.1
arahy.Tifrunner.gnm1.ann1.GVQ212 Arachis hypogaea HOM05D005555 ORTHO05D006923 5.8e-116 421.8 432 58.3
CSS0007038 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 1.3e-115 420.6 405 61.7
CARHR040810 Cardamine hirsuta HOM05D005555 ORTHO05D006923 1.7e-115 420.2 391 62.7
Ah.10g032310 Amaranthus hybridus HOM05D005555 ORTHO05D006923 2.2e-115 419.9 397 61.2
CDE04G3207 Ceratophyllum demersum HOM05D005555 ORTHO05D006923 2.9e-115 419.5 391 60.6
DCAR_016709 Daucus carota HOM05D005555 ORTHO05D006923 4.9e-115 418.7 390 62.8
Medtr3g052180 Medicago truncatula HOM05D005555 ORTHO05D006923 4.9e-115 418.7 390 60.8
DCAR_001508 Daucus carota HOM05D005555 ORTHO05D006923 1.1e-114 417.5 390 62.6
Aa31LG10G3630 Aethionema arabicum HOM05D005555 ORTHO05D006923 4.2e-114 415.6 390 62.6
PGR031G0129 Punica granatum HOM05D005555 ORTHO05D006923 4.2e-114 415.6 398 61.1
CAN.G542.3 Capsicum annuum HOM05D005555 ORTHO05D006923 5.4e-114 415.2 395 60.5
Thhalv10011513m.g Eutrema salsugineum HOM05D005555 ORTHO05D006923 2.1e-113 413.3 386 63.7
BcaB02g11175 Brassica carinata HOM05D005555 ORTHO05D006923 6.0e-113 411.8 386 62.4
Nitab4.5_0000981g0050 Nicotiana tabacum HOM05D005555 ORTHO05D006923 1.0e-112 411.0 429 56.6
Cc07_g19690 Coffea canephora HOM05D005555 ORTHO05D006923 1.7e-112 410.2 388 60.8
Cc05_g13620 Coffea canephora HOM05D005555 ORTHO05D006923 3.0e-112 409.5 388 60.3
MD09G1208700 Malus domestica HOM05D005555 ORTHO05D006923 3.9e-112 409.1 388 62.4
Medtr5g049170 Medicago truncatula HOM05D005555 ORTHO05D006923 1.1e-111 407.5 390 59.2
Ca_14731_v3 Cicer arietinum L. HOM05D005555 ORTHO05D006923 5.6e-111 405.2 467 53.3
BraA05t20906Z Brassica rapa HOM05D005555 ORTHO05D006923 9.6e-111 404.4 387 61.2
A05p19990 Brassica napus HOM05D005555 ORTHO05D006923 9.0e-109 397.9 387 61.2
Sabra11G0086200 Salix brachista HOM05D005555 ORTHO05D006923 2.0e-108 396.7 381 61.9
Lsat_1_v5_gn_2_47780 Lactuca sativa HOM05D005555 ORTHO05D006923 1.7e-107 393.7 390 60.3
AUR62018195 Chenopodium quinoa HOM05D005555 ORTHO05D006923 2.4e-106 389.8 398 58.0
ATR0752G192 Amborella trichopoda HOM05D005555 ORTHO05D006923 3.2e-106 389.4 396 57.8
MD03G1200100 Malus domestica HOM05D005555 ORTHO05D006923 3.0e-104 382.9 397 55.9
unitig_744.g24404 Utricularia gibba HOM05D005555 ORTHO05D006923 6.7e-104 381.7 392 58.4
HanXRQChr03g0076481 Helianthus annuus HOM05D005555 ORTHO05D006923 1.5e-103 380.6 369 59.6
Prupe.4G214200 Prunus persica HOM05D005555 ORTHO05D006923 8.1e-102 374.8 380 57.4
BcaB07g33510 Brassica carinata HOM05D005555 ORTHO05D006923 1.8e-101 373.6 400 58.0
Cfa020338 Carpinus fangiana HOM05D005555 ORTHO05D006923 1.1e-98 364.4 347 63.1
RcHm_v2.0_Chr5g0039771 Rosa chinensis HOM05D005555 ORTHO05D006923 4.2e-98 362.5 391 54.5
vmacro11723 Vaccinium macrocarpon HOM05D005555 ORTHO05D006923 1.6e-97 360.5 490 50.2
Haze_09680 Corylus avellana HOM05D005555 ORTHO05D006923 6.0e-97 358.6 452 52.2
FvH4_3g22760 Fragaria vesca HOM05D005555 ORTHO05D006923 7.9e-97 358.2 392 54.1
HPP92_010410 Vanilla planifolia HOM05D005555 ORTHO05D006923 3.9e-96 355.9 396 55.6
Gohir.D05G369900 Gossypium hirsutum HOM05D005555 ORTHO05D006923 2.5e-95 353.2 395 55.9
FvH4_6g31880 Fragaria vesca HOM05D005555 ORTHO05D006923 8.2e-94 348.2 335 61.2
HanXRQChr05g0134351 Helianthus annuus HOM05D005555 ORTHO05D006923 1.4e-93 347.4 390 55.4
Gohir.D05G370300 Gossypium hirsutum HOM05D005555 ORTHO05D006923 1.0e-91 341.3 345 59.7
SMO352G0045 Selaginella moellendorffii HOM05D005555 ORTHO05D006923 2.5e-90 336.7 386 52.3
Mapoly0032s0110 Marchantia polymorpha HOM05D005555 ORTHO05D006923 1.4e-85 320.9 395 48.4
TPR.G5778 Trifolium pratense HOM05D005555 ORTHO05D006923 1.5e-84 317.4 303 60.1
Zm00001eb230170 Zea mays HOM05D005555 ORTHO05D006923 1.7e-83 313.9 387 50.9
FAN16G3656 Fragaria x ananassa HOM05D005555 ORTHO05D006923 2.5e-82 310.1 372 51.3
arahy.Tifrunner.gnm1.ann1.92YVPD Arachis hypogaea HOM05D005555 ORTHO05D006923 9.7e-79 298.1 392 49.2
Pp3c17_11280 Physcomitrium patens HOM05D005555 ORTHO05D006923 1.1e-77 294.7 390 46.9
FAN25G0297 Fragaria x ananassa HOM05D005555 ORTHO05D006923 2.1e-73 280.4 331 51.4
AUR62038682 Chenopodium quinoa HOM05D005555 ORTHO05D006923 2.7e-73 280.0 396 47.0
arahy.Tifrunner.gnm1.ann1.21WID0 Arachis hypogaea HOM05D005555 ORTHO05D006923 1.8e-69 267.3 345 48.7
CBR_g19746 Chara braunii HOM05D005555 ORTHO05D006923 2.4e-45 187.2 388 34.3
Medtr5g049150 Medicago truncatula HOM05D005555 ORTHO05D006923 7.7e-44 182.2 169 59.2
CBR_g6714 Chara braunii HOM05D005555 ORTHO05D006923 2.4e-29 134.0 390 31.3
Os02g0119100 Oryza sativa ssp. japonica HOM05D005555 ORTHO05D006923 6.8e-24 115.9 175 45.7
TPR.G5733 Trifolium pratense HOM05D005555 ORTHO05D006923 1.6e-17 94.7 84 63.1
Lsat_1_v5_gn_9_94361 Lactuca sativa HOM05D005555 ORTHO05D006923 2.9e-14 84.0 66 65.2
Hma1.2p1_0206F.1_g087650 Hydrangea macrophylla HOM05D005555 ORTHO05D006923 1.6e-09 68.2 38 81.6
Hma1.2p1_0545F.1_g176020 Hydrangea macrophylla HOM05D005555 ORTHO05D006923 1.6e-09 68.2 35 88.6
Actinidia13832 Actinidia chinensis HOM05D005555 ORTHO05D006923 1.3e-06 58.5 53 58.5


User provided reference genes

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