Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0020021 Sechium edule HOM05D005436 ORTHO05D006215 5.1e-133 478.0 293 100.0
MELO3C010688.2 Cucumis melo HOM05D005436 ORTHO05D006215 4.2e-103 378.6 312 64.4
CsaV3_2G024910 Cucumis sativus L. HOM05D005436 ORTHO05D006215 1.1e-87 327.4 291 68.4
ClCG08G017720 Citrullus lanatus HOM05D005436 ORTHO05D006215 1.4e-85 320.5 288 68.1
CANSAT01G1386 Cannabis sativa HOM05D005436 ORTHO05D006215 1.1e-82 310.8 291 64.6
Manes.13G025400 Manihot esculenta HOM05D005436 ORTHO05D006215 6.0e-81 305.1 293 64.8
Glyma.02G038300 Glycine max HOM05D005436 ORTHO05D006215 7.3e-79 298.1 284 64.4
Phvul.002G150600 Phaseolus vulgaris HOM05D005436 ORTHO05D006215 2.6e-76 289.7 288 69.8
Cfa009203 Carpinus fangiana HOM05D005436 ORTHO05D006215 5.8e-76 288.5 288 62.8
TAR629G0589 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.9e-74 283.5 287 62.4
TAR629G3419 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.9e-74 283.5 287 62.4
QL03p058434 Quercus lobata HOM05D005436 ORTHO05D006215 4.1e-74 282.3 287 63.1
Atru.chr11.2113 Acer truncatum HOM05D005436 ORTHO05D006215 5.4e-74 282.0 287 61.7
Atru.chr11.2128 Acer truncatum HOM05D005436 ORTHO05D006215 5.4e-74 282.0 287 61.7
Glyma.01G026500 Glycine max HOM05D005436 ORTHO05D006215 7.0e-74 281.6 284 61.6
VMungo1215G1754 Vigna mungo HOM05D005436 ORTHO05D006215 7.0e-74 281.6 283 61.8
CSS0002796 Camellia sinensis var. sinensis HOM05D005436 ORTHO05D006215 2.1e-73 280.0 294 62.2
PGR119G1276 Punica granatum HOM05D005436 ORTHO05D006215 4.6e-73 278.9 288 61.5
Potri.010G045300 Populus trichocarpa HOM05D005436 ORTHO05D006215 6.0e-73 278.5 289 61.6
CiPaw.05G183100 Carya illinoinensis HOM05D005436 ORTHO05D006215 1.7e-72 276.9 285 63.2
Rhsim12G0040900 Rhododendron simsii HOM05D005436 ORTHO05D006215 1.1e-71 274.2 298 58.4
Thecc.02G258400 Theobroma cacao HOM05D005436 ORTHO05D006215 2.5e-71 273.1 293 60.8
Ciclev10032010m.g Citrus clementina HOM05D005436 ORTHO05D006215 3.3e-71 272.7 293 61.4
COL.COLO4_24251 Corchorus olitorius HOM05D005436 ORTHO05D006215 7.3e-71 271.6 285 61.4
Lj3A1057T77 Lonicera japonica HOM05D005436 ORTHO05D006215 1.6e-70 270.4 290 60.3
MSTRG.7922 Avicennia marina HOM05D005436 ORTHO05D006215 2.1e-70 270.0 291 59.8
Duzib251G0682 Durio zibethinus HOM05D005436 ORTHO05D006215 4.7e-70 268.9 295 59.0
Eucgr.H02509 Eucalyptus grandis HOM05D005436 ORTHO05D006215 4.7e-70 268.9 287 60.3
Actinidia27803 Actinidia chinensis HOM05D005436 ORTHO05D006215 8.1e-70 268.1 294 59.2
MSTRG.2420 Avicennia marina HOM05D005436 ORTHO05D006215 1.1e-69 267.7 293 59.7
Gohir.A05G312700 Gossypium hirsutum HOM05D005436 ORTHO05D006215 2.3e-69 266.5 293 60.4
Gorai.009G335800 Gossypium raimondii HOM05D005436 ORTHO05D006215 2.3e-69 266.5 293 60.4
Nitab4.5_0004301g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 2.3e-69 266.5 293 58.7
Migut.E00197 Erythranthe guttata HOM05D005436 ORTHO05D006215 4.0e-69 265.8 285 60.4
Sabra10G0023000 Salix brachista HOM05D005436 ORTHO05D006215 4.0e-69 265.8 289 59.2
Lsat_1_v5_gn_8_150780 Lactuca sativa HOM05D005436 ORTHO05D006215 5.2e-69 265.4 293 58.7
Nitab4.5_0000069g0320 Nicotiana tabacum HOM05D005436 ORTHO05D006215 6.8e-69 265.0 279 60.6
PSO832G1925 Papaver somniferum HOM05D005436 ORTHO05D006215 1.2e-68 264.2 285 58.9
HanXRQChr08g0208111 Helianthus annuus HOM05D005436 ORTHO05D006215 1.5e-68 263.8 293 58.0
THA.LOC104822162 Tarenaya hassleriana HOM05D005436 ORTHO05D006215 1.5e-68 263.8 296 58.8
Oeu001711.1 Olea europaea HOM05D005436 ORTHO05D006215 4.4e-68 262.3 294 58.2
Lalb_Chr16g0381971 Lupinus albus HOM05D005436 ORTHO05D006215 1.3e-67 260.8 291 57.7
ECA233G4095 Erigeron canadensis HOM05D005436 ORTHO05D006215 3.7e-67 259.2 295 56.3
Lalb_Chr09g0326141 Lupinus albus HOM05D005436 ORTHO05D006215 6.4e-67 258.5 291 64.3
Gorai.002G187200 Gossypium raimondii HOM05D005436 ORTHO05D006215 2.4e-66 256.5 293 57.7
Sopen05g008220 Solanum pennellii HOM05D005436 ORTHO05D006215 3.2e-66 256.1 293 57.0
Prupe.1G243200 Prunus persica HOM05D005436 ORTHO05D006215 7.1e-66 255.0 291 55.7
Gohir.D01G151000 Gossypium hirsutum HOM05D005436 ORTHO05D006215 9.2e-66 254.6 293 57.3
Manes.12G023900 Manihot esculenta HOM05D005436 ORTHO05D006215 1.2e-65 254.2 292 57.5
Lj2g0004338 Lotus japonicus HOM05D005436 ORTHO05D006215 1.6e-65 253.8 283 57.6
CDE07G1825 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 2.1e-65 253.4 294 55.4
Gohir.A01G159300 Gossypium hirsutum HOM05D005436 ORTHO05D006215 2.1e-65 253.4 293 56.7
Nitab4.5_0002631g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 3.5e-65 252.7 291 57.0
TWI36G0572 Tripterygium wilfordii HOM05D005436 ORTHO05D006215 4.6e-65 252.3 291 56.0
Ca_04576_v3 Cicer arietinum L. HOM05D005436 ORTHO05D006215 1.3e-64 250.8 291 63.9
Sp5g25750 Schrenkiella parvula HOM05D005436 ORTHO05D006215 1.7e-64 250.4 291 55.7
Solyc05g013410.3 Solanum lycopersicum HOM05D005436 ORTHO05D006215 1.7e-64 250.4 293 56.7
PGSC0003DMG400018621 Solanum tuberosum HOM05D005436 ORTHO05D006215 2.3e-64 250.0 293 56.7
SGA_v2.0_scaffold87G27081 Striga asiatica HOM05D005436 ORTHO05D006215 2.3e-64 250.0 281 57.7
Migut.L01484 Erythranthe guttata HOM05D005436 ORTHO05D006215 5.1e-64 248.8 283 58.0
Sopen01g003470 Solanum pennellii HOM05D005436 ORTHO05D006215 6.6e-64 248.4 292 55.8
Carub.0002s1732 Capsella rubella HOM05D005436 ORTHO05D006215 8.6e-64 248.1 293 55.3
EL10Ac6g13796 Beta vulgaris HOM05D005436 ORTHO05D006215 1.9e-63 246.9 293 54.6
CARHR063810 Cardamine hirsuta HOM05D005436 ORTHO05D006215 2.5e-63 246.5 291 55.3
C06p44590 Brassica napus HOM05D005436 ORTHO05D006215 5.6e-63 245.4 285 55.4
BraA07t31265Z Brassica rapa HOM05D005436 ORTHO05D006215 5.6e-63 245.4 285 55.1
SHI17740 Sapria himalayana HOM05D005436 ORTHO05D006215 5.6e-63 245.4 296 56.8
BolC6t39523H Brassica oleracea HOM05D005436 ORTHO05D006215 7.3e-63 245.0 285 55.4
Hund25385 Selenicereus undatus HOM05D005436 ORTHO05D006215 9.5e-63 244.6 287 55.1
PGSC0003DMG400016374 Solanum tuberosum HOM05D005436 ORTHO05D006215 1.2e-62 244.2 292 55.5
Ah.03g133110 Amaranthus hybridus HOM05D005436 ORTHO05D006215 2.1e-62 243.4 293 54.9
A07p37030 Brassica napus HOM05D005436 ORTHO05D006215 2.1e-62 243.4 285 54.7
unitig_744.g24291 Utricularia gibba HOM05D005436 ORTHO05D006215 2.1e-62 243.4 287 53.7
AL2G30010 Arabidopsis lyrata HOM05D005436 ORTHO05D006215 2.8e-62 243.0 291 54.3
AUR62005449 Chenopodium quinoa HOM05D005436 ORTHO05D006215 2.8e-62 243.0 297 54.5
Solyc01g007930.4 Solanum lycopersicum HOM05D005436 ORTHO05D006215 2.8e-62 243.0 292 54.8
unitig_21.g20870 Utricularia gibba HOM05D005436 ORTHO05D006215 4.7e-62 242.3 312 44.2
Cpa.g.sc33.9 Carica papaya HOM05D005436 ORTHO05D006215 1.4e-61 240.7 285 54.4
Nitab4.5_0000740g0060 Nicotiana tabacum HOM05D005436 ORTHO05D006215 1.8e-61 240.4 291 56.4
Aqoxy5G03784 Aquilegia oxysepala HOM05D005436 ORTHO05D006215 5.2e-61 238.8 290 54.5
Sc14g0008720 Simmondsia chinensis HOM05D005436 ORTHO05D006215 8.9e-61 238.0 291 54.6
Aa31LG4G10370 Aethionema arabicum HOM05D005436 ORTHO05D006215 1.2e-60 237.7 294 54.4
Medtr5g033210 Medicago truncatula HOM05D005436 ORTHO05D006215 7.6e-60 235.0 285 54.0
MD13G1102600 Malus domestica HOM05D005436 ORTHO05D006215 9.9e-60 234.6 290 53.4
arahy.Tifrunner.gnm1.ann1.9TCE4B Arachis hypogaea HOM05D005436 ORTHO05D006215 2.9e-59 233.0 281 55.2
FAN12G3651 Fragaria x ananassa HOM05D005436 ORTHO05D006215 4.2e-58 229.2 310 42.6
CAN.G282.54 Capsicum annuum HOM05D005436 ORTHO05D006215 9.2e-58 228.0 288 52.1
Thhalv10018848m.g Eutrema salsugineum HOM05D005436 ORTHO05D006215 1.2e-57 227.6 267 56.2
AT1G70590 Arabidopsis thaliana HOM05D005436 ORTHO05D006215 1.1e-55 221.1 285 51.9
RcHm_v2.0_Chr4g0432791 Rosa chinensis HOM05D005436 ORTHO05D006215 3.3e-55 219.5 291 51.5
ATR0686G177 Amborella trichopoda HOM05D005436 ORTHO05D006215 4.8e-54 215.7 280 52.5
DCAR_024434 Daucus carota HOM05D005436 ORTHO05D006215 5.3e-53 212.2 293 47.8
Haze_12240 Corylus avellana HOM05D005436 ORTHO05D006215 9.0e-53 211.5 164 64.0
Nn4g22635 Nelumbo nucifera HOM05D005436 ORTHO05D006215 9.0e-53 211.5 170 61.8
TAR371G0549 Trochodendron aralioides HOM05D005436 ORTHO05D006215 9.0e-53 211.5 174 60.3
MBI10_g03014_MAGBIO Magnolia biondii HOM05D005436 ORTHO05D006215 3.4e-52 209.5 279 54.5
Dinv15239 Davidia involucrata HOM05D005436 ORTHO05D006215 7.6e-52 208.4 174 62.1
vmacro01128 Vaccinium macrocarpon HOM05D005436 ORTHO05D006215 3.8e-51 206.1 313 48.9
Actinidia08140 Actinidia chinensis HOM05D005436 ORTHO05D006215 5.4e-50 202.2 171 58.5
arahy.Tifrunner.gnm1.ann1.RINP63 Arachis hypogaea HOM05D005436 ORTHO05D006215 1.6e-49 200.7 357 43.4
SEGI_41390 Sequoiadendron giganteum HOM05D005436 ORTHO05D006215 1.6e-49 200.7 285 48.8
Potri.008G187200 Populus trichocarpa HOM05D005436 ORTHO05D006215 1.7e-48 197.2 171 60.2
Gohir.D05G314200 Gossypium hirsutum HOM05D005436 ORTHO05D006215 1.9e-47 193.7 175 59.4
FAN07G0404 Fragaria x ananassa HOM05D005436 ORTHO05D006215 5.6e-47 192.2 283 52.7
FAN22G0693 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.3e-46 191.0 283 55.1
FvH4_4g25470 Fragaria vesca HOM05D005436 ORTHO05D006215 8.1e-46 188.3 283 48.1
FAN17G0814 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.8e-45 187.2 283 47.7
BcaB03g14825 Brassica carinata HOM05D005436 ORTHO05D006215 1.5e-44 184.1 167 55.7
SalBow2G2235 Salvia bowleyana HOM05D005436 ORTHO05D006215 1.3e-43 181.0 293 47.1
HPP92_021381 Vanilla planifolia HOM05D005436 ORTHO05D006215 1.9e-42 177.2 288 44.1
AUR62024292 Chenopodium quinoa HOM05D005436 ORTHO05D006215 3.2e-42 176.4 237 54.0
RcHm_v2.0_Chr7g0240871 Rosa chinensis HOM05D005436 ORTHO05D006215 1.6e-38 164.1 225 52.9
Peaxi162Scf00128g00005 Petunia axillaris HOM05D005436 ORTHO05D006215 9.0e-37 158.3 241 50.6
CDE04G1163 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 3.4e-36 156.4 213 43.2
Pp3c16_22820 Physcomitrium patens HOM05D005436 ORTHO05D006215 2.2e-35 153.7 284 43.0
Psat2g092560 Pisum sativum HOM05D005436 ORTHO05D006215 3.5e-33 146.4 101 69.3
CAN.G227.3 Capsicum annuum HOM05D005436 ORTHO05D006215 3.0e-32 143.3 103 68.0
SMO334G0079 Selaginella moellendorffii HOM05D005436 ORTHO05D006215 1.5e-31 141.0 295 40.7
AagrBONN_evm.TU.Sc2ySwM_344.5149 Anthoceros agrestis HOM05D005436 ORTHO05D006215 2.5e-31 140.2 279 46.6
TPR.G38818 Trifolium pratense HOM05D005436 ORTHO05D006215 1.5e-28 131.0 142 48.6
GSVIVG01004082001 Vitis vinifera HOM05D005436 ORTHO05D006215 1.5e-28 131.0 166 61.4
Cc11_g15600 Coffea canephora HOM05D005436 ORTHO05D006215 7.6e-28 128.6 166 60.8
Os04g0476000 Oryza sativa ssp. japonica HOM05D005436 ORTHO05D006215 5.0e-27 125.9 286 45.8
FAN18G0478 Fragaria x ananassa HOM05D005436 ORTHO05D006215 7.1e-26 122.1 239 34.3
TAR371G0429 Trochodendron aralioides HOM05D044080 ORTHO05D006215 7.1e-26 122.1 134 66.4
FAN13G0137 Fragaria x ananassa HOM05D005436 ORTHO05D006215 3.9e-24 116.3 239 33.5
FAN08G0615 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.9e-23 114.0 239 33.5
CAN.G227.4 Capsicum annuum HOM05D005436 ORTHO05D006215 5.7e-23 112.5 160 56.2
CBR_g41529 Chara braunii HOM05D005436 ORTHO05D006215 1.3e-22 111.3 91 56.0
TAR371G0328 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.5e-20 104.4 142 62.0
Zm00001eb344380 Zea mays HOM05D005436 ORTHO05D006215 1.3e-14 84.7 88 48.9
TAR633G1814 Trochodendron aralioides HOM05D005436 ORTHO05D006215 3.7e-14 83.2 128 58.6
Psat0s3979g0040 Pisum sativum HOM05D003776 ORTHO05D004459 2.2e-11 73.9 49 73.5
RcHm_v2.0_Chr4g0436601 Rosa chinensis HOM05D005436 ORTHO05D006215 6.5e-11 72.4 83 49.4
TPR.G38771 Trifolium pratense HOM05D005436 ORTHO05D006215 1.4e-10 71.2 77 46.8
FvH4_5g38910 Fragaria vesca HOM05D005436 ORTHO05D006215 1.4e-08 64.7 108 35.2
TAR633G0170 Trochodendron aralioides HOM05D005436 ORTHO05D006215 2.3e-08 63.9 122 54.1
AL3G40260 Arabidopsis lyrata HOM05D005436 ORTHO05D006215 3.0e-08 63.5 77 44.2
Hma1.2p1_0870F.1_g230930 Hydrangea macrophylla HOM05D005436 ORTHO05D006215 5.1e-08 62.8 46 73.9
TAR314G0004 Trochodendron aralioides HOM05D005436 ORTHO05D006215 3.3e-07 60.1 190 27.4


User provided reference genes

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