Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0020001 Sechium edule HOM05D002134 ORTHO05D008658 0.0e+00 1261.9 728 100.0
ClCG05G019130 Citrullus lanatus HOM05D002134 ORTHO05D008658 4.9e-241 838.2 687 74.5
MELO3C003852.2 Cucumis melo HOM05D002134 ORTHO05D008658 9.5e-229 797.3 678 71.5
CsaV3_3G045010 Cucumis sativus L. HOM05D002134 ORTHO05D008658 4.7e-220 768.5 677 70.2
Sed0018102 Sechium edule HOM05D002134 ORTHO05D008658 2.2e-217 759.6 667 71.7
Cfa018138 Carpinus fangiana HOM05D002134 ORTHO05D008658 4.1e-107 393.3 755 40.8
QL02p007944 Quercus lobata HOM05D002134 ORTHO05D008658 8.1e-103 379.0 694 42.7
Haze_17986 Corylus avellana HOM05D002134 ORTHO05D008658 6.8e-102 375.9 792 39.1
CANSAT25G1781 Cannabis sativa HOM05D002134 ORTHO05D008658 6.0e-98 362.8 683 40.4
Dinv36064 Davidia involucrata HOM05D002134 ORTHO05D008658 1.6e-95 354.8 707 39.0
Atru.chr8.2604 Acer truncatum HOM05D002134 ORTHO05D008658 6.8e-94 349.4 713 39.3
Atru.chr13.512 Acer truncatum HOM05D002134 ORTHO05D008658 1.3e-92 345.1 716 39.1
MD08G1033500 Malus domestica HOM05D002134 ORTHO05D008658 2.9e-92 344.0 706 40.4
Ciclev10000375m.g Citrus clementina HOM05D002134 ORTHO05D008658 9.2e-91 339.0 685 39.1
Eucgr.F01907 Eucalyptus grandis HOM05D002134 ORTHO05D008658 4.6e-90 336.7 689 37.9
GSVIVG01009687001 Vitis vinifera HOM05D002134 ORTHO05D008658 6.0e-90 336.3 730 37.1
Rhsim07G0237200 Rhododendron simsii HOM05D002134 ORTHO05D008658 1.2e-87 328.6 595 41.5
Manes.05G161600 Manihot esculenta HOM05D002134 ORTHO05D008658 2.8e-87 327.4 687 37.8
CiPaw.15G075800 Carya illinoinensis HOM05D002134 ORTHO05D008658 3.1e-86 323.9 526 42.2
Nn5g29542 Nelumbo nucifera HOM05D002134 ORTHO05D008658 4.0e-86 323.6 732 37.6
TWI12G0094 Tripterygium wilfordii HOM05D002134 ORTHO05D008658 5.2e-86 323.2 695 38.4
Actinidia38014 Actinidia chinensis HOM05D002134 ORTHO05D008658 1.5e-85 321.6 765 36.7
Prupe.1G381400 Prunus persica HOM05D002134 ORTHO05D008658 2.0e-85 321.2 755 36.6
Ca_15521_v3 Cicer arietinum L. HOM05D002134 ORTHO05D008658 4.9e-84 316.6 682 38.3
Lj1g0006718 Lotus japonicus HOM05D002134 ORTHO05D008658 1.4e-83 315.1 684 37.1
Medtr3g111740 Medicago truncatula HOM05D002134 ORTHO05D008658 7.8e-82 309.3 693 37.7
vmacro04518 Vaccinium macrocarpon HOM05D002134 ORTHO05D008658 3.0e-81 307.4 700 36.6
MD15G1030200 Malus domestica HOM05D002134 ORTHO05D008658 1.1e-78 298.9 723 36.1
TAR376G0546 Trochodendron aralioides HOM05D002134 ORTHO05D008658 6.9e-78 296.2 730 35.5
Lj4A785T29 Lonicera japonica HOM05D002134 ORTHO05D008658 2.6e-77 294.3 607 38.7
Lalb_Chr23g0266641 Lupinus albus HOM05D002134 ORTHO05D008658 5.8e-77 293.1 714 35.7
Peaxi162Scf00925g00033 Petunia axillaris HOM05D002134 ORTHO05D008658 2.9e-76 290.8 699 35.1
SGA_v2.0_scaffold48G18075 Striga asiatica HOM05D002134 ORTHO05D008658 1.1e-75 288.9 721 35.5
DCAR_008767 Daucus carota HOM05D002134 ORTHO05D008658 1.4e-75 288.5 519 39.5
Nitab4.5_0006995g0020 Nicotiana tabacum HOM05D002134 ORTHO05D008658 1.4e-75 288.5 756 33.5
TPR.G12392 Trifolium pratense HOM05D002134 ORTHO05D008658 2.4e-75 287.7 738 34.7
Duzib116G0898 Durio zibethinus HOM05D002134 ORTHO05D008658 3.2e-75 287.3 686 36.2
Sabra02G0199600 Salix brachista HOM05D002134 ORTHO05D008658 3.2e-75 287.3 696 35.1
Migut.C00708 Erythranthe guttata HOM05D002134 ORTHO05D008658 7.9e-74 282.7 726 34.3
FvH4_2g39970 Fragaria vesca HOM05D002134 ORTHO05D008658 2.3e-73 281.2 681 35.2
Nitab4.5_0000523g0050 Nicotiana tabacum HOM05D002134 ORTHO05D008658 3.0e-73 280.8 750 34.1
FAN27G2069 Fragaria x ananassa HOM05D002134 ORTHO05D008658 5.1e-73 280.0 706 35.3
CSS0008789 Camellia sinensis var. sinensis HOM05D002134 ORTHO05D008658 8.7e-73 279.3 694 36.3
Glyma.06G033100 Glycine max HOM05D002134 ORTHO05D008658 8.7e-73 279.3 679 35.8
Gohir.A01G116400 Gossypium hirsutum HOM05D002134 ORTHO05D008658 2.5e-72 277.7 703 34.9
Gorai.002G128800 Gossypium raimondii HOM05D002134 ORTHO05D008658 7.4e-72 276.2 695 35.8
Potri.002G262800 Populus trichocarpa HOM05D002134 ORTHO05D008658 1.3e-71 275.4 541 38.4
arahy.Tifrunner.gnm1.ann1.20CGAG Arachis hypogaea HOM05D002134 ORTHO05D008658 1.6e-71 275.0 687 38.3
Phvul.009G057000 Phaseolus vulgaris HOM05D002134 ORTHO05D008658 2.8e-71 274.2 678 36.9
Aqoxy6G01051 Aquilegia oxysepala HOM05D002134 ORTHO05D008658 6.2e-71 273.1 691 34.0
RcHm_v2.0_Chr6g0300781 Rosa chinensis HOM05D002134 ORTHO05D008658 1.4e-70 271.9 698 35.0
Thecc.08G024500 Theobroma cacao HOM05D002134 ORTHO05D008658 3.1e-70 270.8 683 34.1
ECA247G2410 Erigeron canadensis HOM05D002134 ORTHO05D008658 1.5e-69 268.5 729 35.0
Gohir.D01G104800 Gossypium hirsutum HOM05D002134 ORTHO05D008658 3.4e-69 267.3 685 34.7
Cc10_g03060 Coffea canephora HOM05D002134 ORTHO05D008658 5.8e-69 266.5 723 34.6
Glyma.04G033100 Glycine max HOM05D002134 ORTHO05D008658 2.9e-68 264.2 676 36.8
PGR031G3893 Punica granatum HOM05D002134 ORTHO05D008658 1.2e-66 258.8 730 33.6
Duzib093G1270 Durio zibethinus HOM05D002134 ORTHO05D008658 1.0e-65 255.8 530 39.1
arahy.Tifrunner.gnm1.ann1.6UHH7V Arachis hypogaea HOM05D002134 ORTHO05D008658 1.3e-65 255.4 733 35.3
SalBow7G3154 Salvia bowleyana HOM05D002134 ORTHO05D008658 3.9e-65 253.8 737 32.8
Psat0s2660g0080 Pisum sativum HOM05D002134 ORTHO05D008658 5.1e-65 253.4 692 35.3
MBI16_g17456_MAGBIO Magnolia biondii HOM05D002134 ORTHO05D008658 1.5e-64 251.9 683 35.4
HanXRQChr04g0105601 Helianthus annuus HOM05D002134 ORTHO05D008658 5.6e-64 250.0 526 38.0
Sopen07g013310 Solanum pennellii HOM05D002134 ORTHO05D008658 3.7e-63 247.3 713 34.4
VMungo1309G2241 Vigna mungo HOM05D006576 ORTHO05D008644 1.8e-62 245.0 720 33.3
PGSC0003DMG400007581 Solanum tuberosum HOM05D002134 ORTHO05D008658 5.3e-62 243.4 757 33.4
Solyc07g025380.3 Solanum lycopersicum HOM05D002134 ORTHO05D008658 1.2e-61 242.3 712 33.6
CAN.G52.14 Capsicum annuum HOM05D002134 ORTHO05D008658 5.8e-61 240.0 718 32.2
FAN20G2431 Fragaria x ananassa HOM05D002134 ORTHO05D003893 8.4e-60 236.1 698 33.2
FAN15G0789 Fragaria x ananassa HOM05D002134 ORTHO05D003893 1.4e-59 235.3 683 33.7
Lsat_1_v5_gn_1_17581 Lactuca sativa HOM05D002134 ORTHO05D008658 2.7e-58 231.1 543 36.3
Hma1.2p1_0203F.1_g086500 Hydrangea macrophylla HOM05D002134 ORTHO05D008658 2.5e-56 224.6 316 46.8
Sc02g0006290 Simmondsia chinensis HOM05D002134 ORTHO05D008658 1.1e-54 219.2 601 34.4
PSO541G2605 Papaver somniferum HOM05D002134 ORTHO05D008658 5.3e-54 216.9 573 34.4
PSO675G8956 Papaver somniferum HOM05D002134 ORTHO05D008658 1.5e-53 215.3 564 34.8
THA.LOC104813840 Tarenaya hassleriana HOM05D002134 ORTHO05D008658 5.0e-52 210.3 538 35.3
Thhalv10019843m.g Eutrema salsugineum HOM05D002134 ORTHO05D008658 2.5e-51 208.0 519 33.7
Lalb_Chr08g0245851 Lupinus albus HOM05D002134 ORTHO05D008658 1.6e-50 205.3 669 31.5
ATR0733G232 Amborella trichopoda HOM05D002134 ORTHO05D008658 4.3e-48 197.2 505 35.2
Carub.0002s2196 Capsella rubella HOM05D002134 ORTHO05D008658 9.7e-48 196.1 704 32.1
Aa31LG4G5340 Aethionema arabicum HOM05D002134 ORTHO05D008658 1.7e-47 195.3 530 32.5
A07p40750 Brassica napus HOM05D002134 ORTHO05D008658 2.2e-47 194.9 524 35.7
BcaC08g46976 Brassica carinata HOM05D002134 ORTHO05D008658 3.7e-47 194.1 535 33.3
CARHR068480 Cardamine hirsuta HOM05D002134 ORTHO05D008658 4.8e-47 193.7 718 31.3
Zm00001eb061990 Zea mays HOM05D002134 ORTHO05D008658 4.8e-47 193.7 489 39.3
Hund27548 Selenicereus undatus HOM05D002134 ORTHO05D008658 6.3e-47 193.4 432 34.5
Hund27550 Selenicereus undatus HOM05D002134 ORTHO05D008658 6.3e-47 193.4 432 34.5
BraA07t31617Z Brassica rapa HOM05D002134 ORTHO05D008658 1.8e-46 191.8 529 34.4
AL2G35050 Arabidopsis lyrata HOM05D002134 ORTHO05D008658 1.3e-44 185.7 645 31.2
unitig_37.g12967 Utricularia gibba HOM05D002134 ORTHO05D008658 1.3e-44 185.7 671 30.7
CDE02G0502 Ceratophyllum demersum HOM05D002134 ORTHO05D008658 1.7e-44 185.3 650 30.5
MBI16_g45959_MAGBIO Magnolia biondii HOM05D002134 ORTHO05D008658 2.2e-44 184.9 701 31.7
Sp5g30280 Schrenkiella parvula HOM05D002134 ORTHO05D008658 2.2e-44 184.9 530 33.2
SEGI_00628 Sequoiadendron giganteum HOM05D002134 ORTHO05D008658 6.5e-44 183.3 712 29.8
C06p49130 Brassica napus HOM05D002134 ORTHO05D008658 2.5e-43 181.4 541 34.4
BolC6t39947H Brassica oleracea HOM05D002134 ORTHO05D008658 2.5e-43 181.4 541 34.4
BcaC08g46941 Brassica carinata HOM05D000061 ORTHO05D008658 5.5e-43 180.3 541 34.0
AT1G75150 Arabidopsis thaliana HOM05D002134 ORTHO05D008658 1.1e-40 172.6 666 30.5
EL10Ac1g01833 Beta vulgaris HOM05D002134 ORTHO05D008658 1.5e-40 172.2 633 28.9
AUR62034948 Chenopodium quinoa HOM05D002134 ORTHO05D008658 1.4e-35 155.6 473 31.5
Oeu036193.1 Olea europaea HOM05D002134 ORTHO05D008658 3.7e-31 141.0 406 32.5
Cpa.g.sc64.74 Carica papaya HOM05D002134 ORTHO05D008658 1.4e-30 139.0 595 31.1
AUR62035457 Chenopodium quinoa HOM05D002134 ORTHO05D008658 3.1e-30 137.9 525 29.3
SHI17315 Sapria himalayana HOM05D002134 ORTHO05D008658 2.0e-29 135.2 188 46.3
HPP92_018472 Vanilla planifolia HOM05D002134 ORTHO05D008658 5.9e-29 133.7 402 31.8
Ah.11g043170 Amaranthus hybridus HOM05D002134 ORTHO05D008658 1.2e-21 109.4 625 26.2
SMO144G0024 Selaginella moellendorffii HOM05D002134 ORTHO05D008658 2.0e-21 108.6 606 25.6
COL.COLO4_26340 Corchorus olitorius HOM05D005308 ORTHO05D006494 1.3e-20 105.9 428 25.7
Pp3c7_550 Physcomitrium patens HOM05D002134 ORTHO05D008658 2.1e-18 98.6 514 26.3
Pp3c7_551 Physcomitrium patens HOM05D002134 ORTHO05D008658 2.1e-18 98.6 514 26.3
Mapoly0032s0034 Marchantia polymorpha HOM05D002134 ORTHO05D008658 4.1e-14 84.3 462 26.4
Peaxi162Scf00162g00213 Petunia axillaris HOM05D000561 ORTHO05D000514 4.4e-08 64.3 178 29.8
AagrBONN_evm.TU.Sc2ySwM_362.1405 Anthoceros agrestis HOM05D051179 ORTHO05D038399 8.3e-07 60.1 70 55.7
DCAR_011210 Daucus carota HOM05D001893 ORTHO05D008658 3.1e-06 58.2 227 31.3


User provided reference genes

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