Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0019935 Sechium edule HOM05D005853 ORTHO05D007308 6.0e-99 364.4 213 100.0
ClCG06G008520 Citrullus lanatus HOM05D005853 ORTHO05D007308 1.7e-40 170.2 146 78.8
MELO3C025336.2 Cucumis melo HOM05D005853 ORTHO05D007308 4.7e-35 152.1 166 68.1
CsaV3_1G030480 Cucumis sativus L. HOM05D005853 ORTHO05D007308 1.6e-30 137.1 143 67.8
Thecc.09G110800 Theobroma cacao HOM05D005853 ORTHO05D007308 4.0e-18 95.9 90 61.1
Atru.chr7.1347 Acer truncatum HOM05D005853 ORTHO05D007308 2.6e-17 93.2 93 58.1
Cpa.g.sc23.111 Carica papaya HOM05D005853 ORTHO05D007308 4.4e-17 92.4 99 56.6
Dinv41601 Davidia involucrata HOM05D005853 ORTHO05D007308 5.8e-17 92.0 102 54.9
CSS0003127 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 9.8e-17 91.3 144 59.7
CSS0011641 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 9.8e-17 91.3 144 59.7
CiPaw.04G164300 Carya illinoinensis HOM05D005853 ORTHO05D007308 9.8e-17 91.3 154 51.3
Sed0009205 Sechium edule HOM05D005853 ORTHO05D007308 9.8e-17 91.3 79 92.4
Ciclev10009718m.g Citrus clementina HOM05D005853 ORTHO05D007308 3.7e-16 89.4 122 50.0
Manes.03G020200 Manihot esculenta HOM05D005853 ORTHO05D007308 4.9e-16 89.0 78 61.5
TAR624G1380 Trochodendron aralioides HOM05D005853 ORTHO05D007308 1.1e-15 87.8 142 55.6
COL.COLO4_34918 Corchorus olitorius HOM05D005853 ORTHO05D007308 3.2e-15 86.3 90 54.4
Gohir.A05G022900 Gossypium hirsutum HOM05D005853 ORTHO05D007308 4.1e-15 85.9 136 61.8
QL02p085450 Quercus lobata HOM05D005853 ORTHO05D007308 4.1e-15 85.9 147 53.7
Haze_25712 Corylus avellana HOM05D005853 ORTHO05D007308 5.4e-15 85.5 74 63.5
Migut.I00880 Erythranthe guttata HOM05D005853 ORTHO05D007308 5.4e-15 85.5 116 46.6
A07p03810 Brassica napus HOM05D005853 ORTHO05D007308 7.0e-15 85.1 100 55.0
BcaC06g36242 Brassica carinata HOM05D005853 ORTHO05D007308 9.2e-15 84.7 100 56.0
C07p06090 Brassica napus HOM05D005853 ORTHO05D007308 9.2e-15 84.7 100 56.0
BolC7t41022H Brassica oleracea HOM05D005853 ORTHO05D007308 9.2e-15 84.7 100 56.0
FAN26G1381 Fragaria x ananassa HOM05D000050 ORTHO05D009634 9.2e-15 84.7 52 80.8
BcaB08g34716 Brassica carinata HOM05D005853 ORTHO05D007308 1.2e-14 84.3 81 60.5
BraA07t28175Z Brassica rapa HOM05D005853 ORTHO05D007308 1.2e-14 84.3 100 54.0
TWI34G0492 Tripterygium wilfordii HOM05D005853 ORTHO05D007308 1.2e-14 84.3 107 49.5
Gorai.009G024500 Gossypium raimondii HOM05D005853 ORTHO05D007308 2.0e-14 83.6 136 60.3
MD02G1047200 Malus domestica HOM05D005853 ORTHO05D007308 2.7e-14 83.2 45 86.7
Eucgr.J02982 Eucalyptus grandis HOM05D005853 ORTHO05D007308 3.5e-14 82.8 96 59.4
THA.LOC104808760 Tarenaya hassleriana HOM05D005853 ORTHO05D007308 3.5e-14 82.8 100 51.0
BcaB03g16471 Brassica carinata HOM05D005853 ORTHO05D007308 6.0e-14 82.0 98 55.1
Cc04_g03260 Coffea canephora HOM05D005853 ORTHO05D007308 6.0e-14 82.0 107 50.5
FvH4_1g04830 Fragaria vesca HOM05D000050 ORTHO05D009634 6.0e-14 82.0 44 88.6
FAN19G0481 Fragaria x ananassa HOM05D000050 ORTHO05D009634 6.0e-14 82.0 44 88.6
AT2G17240 Arabidopsis thaliana HOM05D005853 ORTHO05D007308 7.8e-14 81.6 97 52.6
RcHm_v2.0_Chr2g0090481 Rosa chinensis HOM05D005853 ORTHO05D007308 7.8e-14 81.6 58 70.7
THA.LOC104804586 Tarenaya hassleriana HOM05D005853 ORTHO05D007308 7.8e-14 81.6 98 52.0
Gorai.010G070700 Gossypium raimondii HOM05D005853 ORTHO05D007308 1.0e-13 81.3 44 88.6
HanXRQChr09g0239771 Helianthus annuus HOM05D005853 ORTHO05D007308 1.0e-13 81.3 59 69.5
Aa31LG8G14610 Aethionema arabicum HOM05D005853 ORTHO05D007308 1.3e-13 80.9 99 51.5
Gohir.D05G024300 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.3e-13 80.9 136 58.8
Gohir.D05G024400 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.3e-13 80.9 90 56.7
Gohir.D06G060700 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.3e-13 80.9 69 65.2
Lalb_Chr22g0351311 Lupinus albus HOM05D005853 ORTHO05D007308 1.3e-13 80.9 103 74.8
Medtr4g012810 Medicago truncatula HOM05D005853 ORTHO05D007308 1.3e-13 80.9 97 47.4
Gohir.A05G022800 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.7e-13 80.5 156 53.2
Gorai.009G024400 Gossypium raimondii HOM05D005853 ORTHO05D007308 1.7e-13 80.5 136 58.1
Lsat_1_v5_gn_7_40661 Lactuca sativa HOM05D005853 ORTHO05D007308 1.7e-13 80.5 122 55.7
Manes.16G116400 Manihot esculenta HOM05D005853 ORTHO05D007308 1.7e-13 80.5 53 75.5
PGR102G0312 Punica granatum HOM05D005853 ORTHO05D007308 1.7e-13 80.5 102 64.7
MSTRG.11072 Avicennia marina HOM05D005853 ORTHO05D007308 2.3e-13 80.1 136 55.9
Nitab4.5_0001983g0030 Nicotiana tabacum HOM05D005853 ORTHO05D007308 2.3e-13 80.1 145 53.8
Psat7g250480 Pisum sativum HOM05D005853 ORTHO05D007308 2.3e-13 80.1 66 65.2
Carub.0003s2483 Capsella rubella HOM05D005853 ORTHO05D007308 3.0e-13 79.7 102 52.0
Hma1.2p1_1455F.1_g284500 Hydrangea macrophylla HOM05D005853 ORTHO05D007308 3.0e-13 79.7 47 78.7
Prupe.3G069800 Prunus persica HOM05D005853 ORTHO05D007308 3.0e-13 79.7 62 67.7
ATR0724G055 Amborella trichopoda HOM05D005853 ORTHO05D007308 3.9e-13 79.3 52 73.1
AL3G39990 Arabidopsis lyrata HOM05D005853 ORTHO05D007308 3.9e-13 79.3 63 66.7
Gohir.A06G062400 Gossypium hirsutum HOM05D005853 ORTHO05D007308 3.9e-13 79.3 44 86.4
BcaC01g02942 Brassica carinata HOM05D005853 ORTHO05D007308 5.0e-13 79.0 47 80.9
C03p58060 Brassica napus HOM05D005853 ORTHO05D007308 5.0e-13 79.0 47 80.9
BolC3t18080H Brassica oleracea HOM05D005853 ORTHO05D007308 5.0e-13 79.0 47 80.9
Carub.0003s3118 Capsella rubella HOM05D005853 ORTHO05D007308 5.0e-13 79.0 53 73.6
Nitab4.5_0000129g0220 Nicotiana tabacum HOM05D005853 ORTHO05D007308 6.6e-13 78.6 90 54.4
Sc12g0009330 Simmondsia chinensis HOM05D005853 ORTHO05D007308 6.6e-13 78.6 60 66.7
VMungo0331G1451 Vigna mungo HOM05D005853 ORTHO05D007308 6.6e-13 78.6 58 67.2
Ah.01g021430 Amaranthus hybridus HOM05D005853 ORTHO05D007308 8.6e-13 78.2 85 51.8
Peaxi162Scf00329g00432 Petunia axillaris HOM05D005853 ORTHO05D007308 8.6e-13 78.2 130 60.0
PGR102G2925 Punica granatum HOM05D005853 ORTHO05D007308 8.6e-13 78.2 45 80.0
Sp3g30580 Schrenkiella parvula HOM05D005853 ORTHO05D007308 8.6e-13 78.2 110 50.9
SGA_v2.0_scaffold5G02572 Striga asiatica HOM05D005853 ORTHO05D007308 8.6e-13 78.2 107 49.5
Duzib187G1793 Durio zibethinus HOM05D005853 ORTHO05D007308 1.1e-12 77.8 81 53.1
Phvul.010G149900 Phaseolus vulgaris HOM05D005853 ORTHO05D007308 1.1e-12 77.8 58 65.5
AT3G24506 Arabidopsis thaliana HOM05D005853 ORTHO05D007308 1.5e-12 77.4 38 92.1
Prupe.7G230800 Prunus persica HOM05D005853 ORTHO05D007308 1.5e-12 77.4 45 82.2
Thecc.06G089900 Theobroma cacao HOM05D005853 ORTHO05D007308 1.5e-12 77.4 86 79.1
TPR.G17682 Trifolium pratense HOM05D005853 ORTHO05D007308 1.5e-12 77.4 98 45.9
Glyma.08G205900 Glycine max HOM05D005853 ORTHO05D007308 1.9e-12 77.0 114 44.7
Lj3g0010943 Lotus japonicus HOM05D005853 ORTHO05D007308 1.9e-12 77.0 87 69.0
MBI13_g01620_MAGBIO Magnolia biondii HOM05D005853 ORTHO05D007308 1.9e-12 77.0 85 72.9
Gohir.A08G241100 Gossypium hirsutum HOM05D005853 ORTHO05D007308 2.5e-12 76.6 135 51.9
Nn2g11754 Nelumbo nucifera HOM05D005853 ORTHO05D007308 2.5e-12 76.6 109 67.9
Solyc04g008710.4 Solanum lycopersicum HOM05D005853 ORTHO05D007308 2.5e-12 76.6 93 51.6
TAR636G2025 Trochodendron aralioides HOM05D005853 ORTHO05D007308 2.5e-12 76.6 68 64.7
AL3G50100 Arabidopsis lyrata HOM05D005853 ORTHO05D007308 3.3e-12 76.3 101 52.5
A06p34130 Brassica napus HOM05D005853 ORTHO05D007308 3.3e-12 76.3 99 51.5
BraA06t26346Z Brassica rapa HOM05D005853 ORTHO05D007308 3.3e-12 76.3 99 51.5
SalBow2G1576 Salvia bowleyana HOM05D005853 ORTHO05D007308 3.3e-12 76.3 94 50.0
Sopen04g003890 Solanum pennellii HOM05D005853 ORTHO05D007308 3.3e-12 76.3 56 67.9
Glyma.07G005500 Glycine max HOM05D005853 ORTHO05D007308 4.3e-12 75.9 92 73.9
Lsat_1_v5_gn_8_95440 Lactuca sativa HOM05D005853 ORTHO05D007308 4.3e-12 75.9 44 77.3
MD09G1211800 Malus domestica HOM05D005853 ORTHO05D007308 4.3e-12 75.9 102 46.1
DCAR_028712 Daucus carota HOM05D005181 ORTHO05D006086 5.6e-12 75.5 100 52.0
CSS0027693 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 7.3e-12 75.1 83 54.2
CDE04G2734 Ceratophyllum demersum HOM05D005853 ORTHO05D007308 7.3e-12 75.1 40 82.5
Duzib150G0727 Durio zibethinus HOM05D005853 ORTHO05D007308 7.3e-12 75.1 40 85.0
Oeu033499.2 Olea europaea HOM05D005853 ORTHO05D007308 7.3e-12 75.1 90 67.8
Zm00001eb247070 Zea mays HOM05D005853 ORTHO05D007308 7.3e-12 75.1 45 75.6
CDE07G2010 Ceratophyllum demersum HOM05D005853 ORTHO05D007308 9.5e-12 74.7 53 84.9
Os02g0614200 Oryza sativa ssp. japonica HOM05D005853 ORTHO05D007308 9.5e-12 74.7 45 75.6
ECA240G1876 Erigeron canadensis HOM05D005853 ORTHO05D007308 1.2e-11 74.3 89 48.3
FvH4_6g31380 Fragaria vesca HOM05D005853 ORTHO05D007308 1.2e-11 74.3 90 48.9
Potri.018G079700 Populus trichocarpa HOM05D005853 ORTHO05D007308 1.2e-11 74.3 91 47.3
MSTRG.22678 Avicennia marina HOM05D005853 ORTHO05D007308 1.6e-11 73.9 146 51.4
CANSAT56G2684 Cannabis sativa HOM05D005853 ORTHO05D007308 1.6e-11 73.9 46 73.9
CiPaw.03G232300 Carya illinoinensis HOM05D005853 ORTHO05D007308 1.6e-11 73.9 35 91.4
unitig_22.g5469 Utricularia gibba HOM05D005853 ORTHO05D007308 1.6e-11 73.9 92 77.2
GSVIVG01017090001 Vitis vinifera HOM05D005853 ORTHO05D007308 1.6e-11 73.9 79 83.5
Thhalv10022893m.g Eutrema salsugineum HOM05D005853 ORTHO05D007308 2.1e-11 73.6 51 74.5
arahy.Tifrunner.gnm1.ann1.84WEKL Arachis hypogaea HOM05D005853 ORTHO05D007308 2.8e-11 73.2 37 89.2
arahy.Tifrunner.gnm1.ann1.JCT5CV Arachis hypogaea HOM05D005853 ORTHO05D007308 2.8e-11 73.2 37 89.2
RcHm_v2.0_Chr2g0138141 Rosa chinensis HOM05D005853 ORTHO05D007308 2.8e-11 73.2 40 85.0
GSVIVG01015393001 Vitis vinifera HOM05D005853 ORTHO05D007308 2.8e-11 73.2 84 78.6
Aqoxy7G03791 Aquilegia oxysepala HOM05D005853 ORTHO05D007308 4.7e-11 72.4 117 40.2
Zm00001eb184630 Zea mays HOM05D005853 ORTHO05D007308 6.2e-11 72.0 45 73.3
SEGI_01601 Sequoiadendron giganteum HOM05D005853 ORTHO05D007308 2.3e-10 70.1 88 46.6
CBR_g48216 Chara braunii HOM05D005853 ORTHO05D007308 3.1e-10 69.7 44 68.2
PGSC0003DMG400025300 Solanum tuberosum HOM05D005853 ORTHO05D007308 4.0e-10 69.3 53 66.0
Mapoly0029s0025 Marchantia polymorpha HOM05D005853 ORTHO05D007308 6.8e-10 68.6 35 80.0
PSO210G6545 Papaver somniferum HOM05D005853 ORTHO05D007308 1.2e-09 67.8 35 85.7
SMO347G0073 Selaginella moellendorffii HOM05D005853 ORTHO05D007308 1.2e-09 67.8 35 80.0
PSO210G7285 Papaver somniferum HOM05D005853 ORTHO05D007308 2.6e-09 66.6 35 82.9
Pp3c2_3480 Physcomitrium patens HOM05D005853 ORTHO05D007308 2.6e-09 66.6 134 49.3
Pp3c1_36270 Physcomitrium patens HOM05D005853 ORTHO05D007308 7.5e-09 65.1 79 59.5
Oeu024066.2 Olea europaea HOM05D005853 ORTHO05D007308 4.6e-06 55.8 206 37.4


User provided reference genes

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