Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0019934 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 2293.5 1171 100.0
ClCG08G007370 Citrullus lanatus HOM05D003952 ORTHO05D005083 0.0e+00 2124.0 1171 92.7
CsaV3_6G005020 Cucumis sativus L. HOM05D003952 ORTHO05D005083 0.0e+00 2112.0 1171 92.1
MELO3C030034.2 Cucumis melo HOM05D003952 ORTHO05D005083 0.0e+00 2109.7 1171 91.9
QL02p038017 Quercus lobata HOM05D003952 ORTHO05D005083 0.0e+00 1801.6 1171 79.0
QL02p037499 Quercus lobata HOM05D003952 ORTHO05D005083 0.0e+00 1798.9 1171 78.9
Haze_17805 Corylus avellana HOM05D003952 ORTHO05D005083 0.0e+00 1784.2 1172 78.0
Cfa018280 Carpinus fangiana HOM05D003952 ORTHO05D005083 0.0e+00 1783.5 1172 78.1
Thecc.08G159400 Theobroma cacao HOM05D003952 ORTHO05D005083 0.0e+00 1767.7 1173 78.2
Atru.chr13.2009 Acer truncatum HOM05D003952 ORTHO05D005083 0.0e+00 1766.1 1170 77.4
Duzib093G1052 Durio zibethinus HOM05D003952 ORTHO05D005083 0.0e+00 1766.1 1173 78.1
Potri.005G196700 Populus trichocarpa HOM05D003952 ORTHO05D005083 0.0e+00 1759.6 1173 77.3
MD10G1034200 Malus domestica HOM05D003952 ORTHO05D005083 0.0e+00 1759.2 1171 77.5
Prupe.8G040600 Prunus persica HOM05D003952 ORTHO05D005083 0.0e+00 1755.3 1171 77.5
MD05G1033400 Malus domestica HOM05D003952 ORTHO05D005083 0.0e+00 1748.8 1171 77.5
Potri.002G064400 Populus trichocarpa HOM05D003952 ORTHO05D005083 0.0e+00 1744.9 1173 77.0
CiPaw.15G012400 Carya illinoinensis HOM05D003952 ORTHO05D005083 0.0e+00 1744.2 1173 77.0
Gohir.D05G248000 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1740.3 1173 77.3
RcHm_v2.0_Chr6g0274251 Rosa chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1738.8 1182 76.1
Gorai.009G258800 Gossypium raimondii HOM05D003952 ORTHO05D005083 0.0e+00 1738.0 1173 77.2
Gohir.A05G246500 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1737.2 1173 77.2
FvH4_2g13030 Fragaria vesca HOM05D003952 ORTHO05D005083 0.0e+00 1736.9 1181 76.6
MELO3C024067.2 Cucumis melo HOM05D003952 ORTHO05D005083 0.0e+00 1734.9 1170 76.6
CsaV3_7G024490 Cucumis sativus L. HOM05D003952 ORTHO05D005083 0.0e+00 1734.5 1170 76.2
Sed0012183 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1733.0 1169 76.7
Glyma.10G221500 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1724.1 1173 75.4
FAN15G1441 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1722.2 1215 74.6
FAN20G1325 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1720.3 1219 74.3
FAN27G2428 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1719.1 1219 74.3
FAN24G3461 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1717.6 1219 74.2
Sc20g0003770 Simmondsia chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1711.4 1171 74.9
CSS0032669 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1711.0 1173 75.4
CSS0017406 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1710.3 1173 76.1
Sabra05G0149800 Salix brachista HOM05D003952 ORTHO05D005083 0.0e+00 1710.3 1228 73.0
Phvul.007G083500 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1706.8 1197 74.7
Medtr1g098160 Medicago truncatula HOM05D003952 ORTHO05D005083 0.0e+00 1706.0 1173 74.9
TWI60G0338 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1705.3 1172 74.9
TAR628G1191 Trochodendron aralioides HOM05D003952 ORTHO05D005083 0.0e+00 1704.9 1172 75.9
Duzib116G0427 Durio zibethinus HOM05D003952 ORTHO05D005083 0.0e+00 1701.8 1173 76.3
Eucgr.F02686 Eucalyptus grandis HOM05D003952 ORTHO05D005083 0.0e+00 1701.0 1170 75.5
VMungo0720G2354 Vigna mungo HOM05D003952 ORTHO05D005083 0.0e+00 1696.0 1196 74.2
TWI34G1640 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1694.5 1170 75.0
CANSAT25G0323 Cannabis sativa HOM05D003952 ORTHO05D005083 0.0e+00 1691.8 1172 75.6
arahy.Tifrunner.gnm1.ann1.5NL3D9 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1690.2 1208 73.6
Lj5g0005273 Lotus japonicus HOM05D003952 ORTHO05D005083 0.0e+00 1689.9 1174 74.7
Lalb_Chr06g0161721 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1689.5 1183 74.7
TWI32G0799 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1687.9 1172 74.8
arahy.Tifrunner.gnm1.ann1.2T81X8 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1687.5 1208 73.5
Cc10_g15270 Coffea canephora HOM05D003952 ORTHO05D005083 0.0e+00 1686.8 1171 73.9
Gohir.A02G062600 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1686.8 1173 75.8
Gohir.D02G068200 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1686.0 1173 75.7
Gorai.005G077100 Gossypium raimondii HOM05D003952 ORTHO05D005083 0.0e+00 1686.0 1173 75.6
Glyma.20G170000 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1685.6 1172 74.2
Sed0012813 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1685.6 945 91.4
Sabra02G0051500 Salix brachista HOM05D003952 ORTHO05D005083 0.0e+00 1681.8 1230 71.9
Lalb_Chr02g0141571 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1680.6 1170 74.4
PGR042G0685 Punica granatum HOM05D003952 ORTHO05D005083 0.0e+00 1673.7 1173 74.8
MSTRG.24931 Avicennia marina HOM05D003952 ORTHO05D005083 0.0e+00 1672.9 1171 73.1
SalBow7G2315 Salvia bowleyana HOM05D003952 ORTHO05D005083 0.0e+00 1662.9 1175 73.7
arahy.Tifrunner.gnm1.ann1.SZWP5S Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1662.5 1178 73.9
Nn008s41421 Nelumbo nucifera HOM05D003952 ORTHO05D005083 0.0e+00 1661.7 1177 73.7
ClCG09G010210 Citrullus lanatus HOM05D003952 ORTHO05D005083 0.0e+00 1656.7 1146 74.9
Rhsim11G0087700 Rhododendron simsii HOM05D003952 ORTHO05D005083 0.0e+00 1655.6 1218 71.8
vmacro01493 Vaccinium macrocarpon HOM05D003952 ORTHO05D005083 0.0e+00 1654.8 1211 72.4
Sopen04g027970 Solanum pennellii HOM05D003952 ORTHO05D005083 0.0e+00 1648.6 1171 72.6
MSTRG.22108 Avicennia marina HOM05D003952 ORTHO05D005083 0.0e+00 1647.5 1173 73.0
CAN.G495.15 Capsicum annuum HOM05D003952 ORTHO05D005083 0.0e+00 1647.5 1152 74.0
EL10Ac1g01605 Beta vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1646.3 1232 70.0
Peaxi162Scf00360g00418 Petunia axillaris HOM05D003952 ORTHO05D005083 0.0e+00 1646.3 1172 72.8
Solyc04g071990.3 Solanum lycopersicum HOM05D003952 ORTHO05D005083 0.0e+00 1645.2 1171 72.3
arahy.Tifrunner.gnm1.ann1.AF3FG0 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1642.9 1209 71.7
Ca_10663_v3 Cicer arietinum L. HOM05D003952 ORTHO05D005083 0.0e+00 1640.6 1231 70.5
Phvul.004G088300 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1640.6 1173 73.4
Glyma.16G163200 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1638.6 1173 72.9
Oeu051283.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1634.4 1168 72.1
Nn5g28824 Nelumbo nucifera HOM05D003952 ORTHO05D005083 0.0e+00 1629.4 1174 72.3
TPR.G17028 Trifolium pratense HOM05D003952 ORTHO05D005083 0.0e+00 1628.2 1173 72.1
DCAR_001164 Daucus carota HOM05D003952 ORTHO05D005083 0.0e+00 1625.5 1177 72.2
AL1G36320 Arabidopsis lyrata HOM05D003952 ORTHO05D005083 0.0e+00 1625.1 1175 72.7
AT1G22770 Arabidopsis thaliana HOM05D003952 ORTHO05D005083 0.0e+00 1625.1 1186 72.5
Carub.0001s2228 Capsella rubella HOM05D003952 ORTHO05D005083 0.0e+00 1625.1 1178 72.1
THA.LOC104810466 Tarenaya hassleriana HOM05D003952 ORTHO05D005083 0.0e+00 1624.8 1178 72.5
Aa31LG7G6730 Aethionema arabicum HOM05D003952 ORTHO05D005083 0.0e+00 1623.2 1178 72.3
CARHR023130 Cardamine hirsuta HOM05D003952 ORTHO05D005083 0.0e+00 1623.2 1180 72.5
AUR62034894 Chenopodium quinoa HOM05D003952 ORTHO05D005083 0.0e+00 1621.7 1232 69.2
MBI04_g08946_MAGBIO Magnolia biondii HOM05D003952 ORTHO05D005083 0.0e+00 1619.4 1187 71.1
Migut.N02951 Erythranthe guttata HOM05D003952 ORTHO05D005083 0.0e+00 1617.4 1171 72.0
Thhalv10006603m.g Eutrema salsugineum HOM05D003952 ORTHO05D005083 0.0e+00 1614.4 1177 72.0
Sp1g20280 Schrenkiella parvula HOM05D003952 ORTHO05D005083 0.0e+00 1614.0 1175 72.0
A09p41970 Brassica napus HOM05D003952 ORTHO05D005083 0.0e+00 1610.1 1177 71.5
C05p21880 Brassica napus HOM05D003952 ORTHO05D005083 0.0e+00 1607.4 1177 71.5
Nitab4.5_0000099g0200 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1606.7 1203 70.7
Ciclev10004044m.g Citrus clementina HOM05D003952 ORTHO05D005083 0.0e+00 1605.5 1098 76.7
Aqoxy6G00415 Aquilegia oxysepala HOM05D003952 ORTHO05D005083 0.0e+00 1602.4 1178 70.9
SGA_v2.0_scaffold133G34641 Striga asiatica HOM05D003952 ORTHO05D005083 0.0e+00 1602.0 1170 72.0
Migut.C00380 Erythranthe guttata HOM05D003952 ORTHO05D005083 0.0e+00 1595.5 1174 72.3
Nitab4.5_0000872g0040 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1592.0 1171 71.9
Solyc12g056650.2 Solanum lycopersicum HOM05D003952 ORTHO05D005083 0.0e+00 1591.2 1176 70.8
Oeu002069.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1588.5 1212 69.2
HanXRQChr11g0320211 Helianthus annuus HOM05D003952 ORTHO05D005083 0.0e+00 1588.2 1172 71.6
Sopen12g029310 Solanum pennellii HOM05D003952 ORTHO05D005083 0.0e+00 1585.9 1176 70.7
CAN.G26.47 Capsicum annuum HOM05D003952 ORTHO05D005083 0.0e+00 1585.5 1176 70.8
Manes.18G095000 Manihot esculenta HOM05D003952 ORTHO05D005083 0.0e+00 1578.9 1175 71.3
Nitab4.5_0004270g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1578.5 1190 70.9
ECA246G0004 Erigeron canadensis HOM05D003952 ORTHO05D005083 0.0e+00 1571.2 1182 70.5
PSO170G5657 Papaver somniferum HOM05D003952 ORTHO05D005083 0.0e+00 1570.8 1179 69.9
Psat6g190640 Pisum sativum HOM05D003952 ORTHO05D005083 0.0e+00 1569.7 1072 75.8
Nitab4.5_0005673g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1563.9 1170 70.3
Lsat_1_v5_gn_9_42181 Lactuca sativa HOM05D003952 ORTHO05D005083 0.0e+00 1560.0 1185 69.7
Lj7A383T43 Lonicera japonica HOM05D003952 ORTHO05D005083 0.0e+00 1552.7 1184 69.3
Lsat_1_v5_gn_6_101520 Lactuca sativa HOM05D003952 ORTHO05D005083 0.0e+00 1545.4 1169 70.5
Os01g0182600 Oryza sativa ssp. japonica HOM05D003952 ORTHO05D005083 0.0e+00 1539.6 1180 68.7
Zm00001eb337600 Zea mays HOM05D003952 ORTHO05D005083 0.0e+00 1538.1 1175 68.7
Zm00001eb122110 Zea mays HOM05D003952 ORTHO05D005083 0.0e+00 1531.5 1176 68.7
ATR1120G094 Amborella trichopoda HOM05D003952 ORTHO05D005083 0.0e+00 1525.4 1148 69.9
Peaxi162Scf00160g01744 Petunia axillaris HOM05D003952 ORTHO05D005083 0.0e+00 1501.9 1206 67.2
HPP92_008686 Vanilla planifolia HOM05D003952 ORTHO05D005083 0.0e+00 1496.1 1182 67.1
AUR62026637 Chenopodium quinoa HOM05D003952 ORTHO05D005083 0.0e+00 1488.4 1110 70.9
HPP92_008674 Vanilla planifolia HOM05D003952 ORTHO05D005083 0.0e+00 1487.2 1183 66.8
Dinv25899 Davidia involucrata HOM05D003952 ORTHO05D005083 0.0e+00 1411.4 947 76.7
unitig_747.g21544 Utricularia gibba HOM05D003952 ORTHO05D005083 0.0e+00 1402.1 1174 64.8
CiPaw.16G008300 Carya illinoinensis HOM05D003952 ORTHO05D005083 0.0e+00 1386.3 947 75.9
Ah.05g168180 Amaranthus hybridus HOM05D003952 ORTHO05D005083 0.0e+00 1380.2 1076 68.7
COL.COLO4_13783 Corchorus olitorius HOM05D003952 ORTHO05D005083 0.0e+00 1330.5 1034 70.3
Lalb_Chr01g0009771 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1294.3 965 71.1
Lj4C703T11 Lonicera japonica HOM05D003952 ORTHO05D005083 0.0e+00 1228.0 958 68.9
unitig_32.g11167 Utricularia gibba HOM05D003952 ORTHO05D005083 0.0e+00 1213.7 1175 57.2
PGSC0003DMG400018791 Solanum tuberosum HOM05D003952 ORTHO05D005083 0.0e+00 1168.3 888 69.6
BcaNung06971 Brassica carinata HOM05D003952 ORTHO05D005083 0.0e+00 1161.4 802 75.3
CSS0023419 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1161.0 977 66.0
Actinidia29549 Actinidia chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1146.0 968 65.2
TAR381G0458 Trochodendron aralioides HOM05D003952 ORTHO05D005083 0.0e+00 1119.8 814 72.5
VMungo0464G1608 Vigna mungo HOM05D003952 ORTHO05D005083 8.0e-312 1074.3 807 71.0
Oeu022058.1 Olea europaea HOM05D003952 ORTHO05D005083 8.7e-309 1063.9 813 69.6
SalBow6G3936 Salvia bowleyana HOM05D003952 ORTHO05D005083 2.0e-297 1026.2 1168 52.8
SMO367G0140 Selaginella moellendorffii HOM05D003952 ORTHO05D005083 1.8e-290 1003.0 1176 49.1
Hma1.2p1_0678F.1_g202015 Hydrangea macrophylla HOM05D003952 ORTHO05D005083 1.2e-286 990.3 723 71.6
Mapoly0019s0145 Marchantia polymorpha HOM05D003952 ORTHO05D005083 5.4e-274 948.3 1212 46.4
GSVIVG01001406001 Vitis vinifera HOM05D003952 ORTHO05D005083 1.7e-267 926.8 540 85.7
CDE04G2370 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 1.4e-245 854.0 718 64.6
Cpa.g.sc26.82 Carica papaya HOM05D003952 ORTHO05D005083 5.6e-239 832.0 603 73.8
CDE04G1363 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 2.1e-185 654.1 433 76.9
VMungo0464G1293 Vigna mungo HOM05D003952 ORTHO05D005083 3.8e-163 580.1 360 79.7
BraA09t39685Z Brassica rapa HOM05D003952 ORTHO05D005083 2.9e-134 484.2 309 77.7
BolC5t30883H Brassica oleracea HOM05D003952 ORTHO05D005083 4.9e-134 483.4 309 77.7
TAR381G1674 Trochodendron aralioides HOM05D003952 ORTHO05D005083 1.1e-133 482.3 307 77.5
Actinidia04747 Actinidia chinensis HOM05D003952 ORTHO05D005083 2.9e-126 457.6 898 37.8
Psat7g241120 Pisum sativum HOM05D002716 ORTHO05D003324 1.6e-116 425.2 619 43.9
GSVIVG01001405001 Vitis vinifera HOM05D003952 ORTHO05D005083 3.9e-115 420.6 285 75.8
AagrBONN_evm.TU.Sc2ySwM_117.1660 Anthoceros agrestis HOM05D003952 ORTHO05D005083 1.8e-112 411.8 809 34.2
CBR_g22347 Chara braunii HOM05D003952 ORTHO05D005083 1.7e-107 395.2 1310 29.2
Cpa.g.sc26.81 Carica papaya HOM05D003952 ORTHO05D005083 3.9e-91 340.9 228 73.2
CDE04G3041 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 2.2e-81 308.5 513 41.3
Lj4A703G54 Lonicera japonica HOM05D003952 ORTHO05D005083 2.2e-81 308.5 199 74.9
Lsat_1_v5_gn_2_63220 Lactuca sativa HOM05D003952 ORTHO05D005083 5.0e-78 297.4 282 60.6
HanXRQChr10g0278641 Helianthus annuus HOM05D003952 ORTHO05D005083 1.2e-76 292.7 205 71.7
COL.COLO4_13782 Corchorus olitorius HOM05D003952 ORTHO05D005083 3.1e-72 278.1 182 75.8
CAN.G1225.1 Capsicum annuum HOM05D003952 ORTHO05D008201 1.4e-69 269.2 182 71.4
Lsat_1_v5_gn_5_129380 Lactuca sativa HOM05D003952 ORTHO05D015589 8.2e-65 253.4 173 75.1
Lsat_1_v5_gn_8_75660 Lactuca sativa HOM05D003952 ORTHO05D005083 1.1e-64 253.1 256 56.6
Sopen10g022170 Solanum pennellii HOM05D003952 ORTHO05D011221 2.9e-62 245.0 144 82.6
Lalb_Chr01g0009781 Lupinus albus HOM05D003952 ORTHO05D005083 6.7e-59 233.8 186 65.6
Lsat_1_v5_gn_3_78320 Lactuca sativa HOM05D003952 ORTHO05D005083 1.8e-51 209.1 132 81.8
Psat5g166880 Pisum sativum HOM05D003952 ORTHO05D005083 6.3e-49 200.7 182 61.0
CANSAT25G0696 Cannabis sativa HOM05D003952 ORTHO05D005083 1.8e-48 199.1 118 87.3
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 3.8e-46 191.4 125 76.8
Duzib041G0651 Durio zibethinus HOM05D003952 ORTHO05D005083 1.9e-37 162.5 92 91.3
Psat7g010640 Pisum sativum HOM05D003952 ORTHO05D037363 1.6e-28 132.9 95 70.5
Psat7g010720 Pisum sativum HOM05D003952 ORTHO05D037363 1.6e-28 132.9 95 70.5
Psat0s4455g0040 Pisum sativum HOM05D003952 ORTHO05D037363 8.0e-28 130.6 90 73.3
Psat0s2845g0120 Pisum sativum HOM05D004054 ORTHO05D004945 4.6e-23 114.8 78 75.6
Nn3g20398 Nelumbo nucifera HOM05D003952 ORTHO05D005083 5.2e-19 101.3 82 64.6
Lsat_1_v5_gn_7_62680 Lactuca sativa HOM05D003952 ORTHO05D015589 3.4e-18 98.6 106 51.9
Lsat_1_v5_gn_3_73081 Lactuca sativa HOM05D003952 ORTHO05D015589 1.2e-15 90.1 63 66.7
TPR.G25241 Trifolium pratense HOM05D003952 ORTHO05D048898 4.6e-15 88.2 59 72.9
Lsat_1_v5_gn_5_15721 Lactuca sativa HOM05D001610 ORTHO05D001585 4.7e-12 78.2 138 38.4
PGSC0003DMG400001110 Solanum tuberosum HOM05D003952 ORTHO05D005083 9.9e-10 70.5 81 43.2


User provided reference genes

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