Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0019925 Sechium edule HOM05D007227 ORTHO05D002252 6.2e-61 237.3 119 100.0
ClCG11G004490 Citrullus lanatus HOM05D007227 ORTHO05D002252 2.6e-19 99.0 85 64.7
CsaV3_2G014630 Cucumis sativus L. HOM05D007227 ORTHO05D002252 5.9e-19 97.8 87 58.6
MELO3C020982.2 Cucumis melo HOM05D007227 ORTHO05D002252 1.1e-17 93.6 86 54.7
TWI31G0501 Tripterygium wilfordii HOM05D007227 ORTHO05D002252 7.4e-14 80.9 91 47.3
Lalb_Chr19g0138601 Lupinus albus HOM05D007227 ORTHO05D002252 6.3e-13 77.8 77 46.8
Phvul.011G046400 Phaseolus vulgaris HOM05D007227 ORTHO05D002252 8.2e-13 77.4 79 41.8
TWI75G0964 Tripterygium wilfordii HOM05D007227 ORTHO05D002252 4.1e-12 75.1 84 46.4
Cfa005018 Carpinus fangiana HOM05D007227 ORTHO05D002252 1.5e-11 73.2 79 48.1
TPR.G38124 Trifolium pratense HOM05D007227 ORTHO05D002252 1.5e-11 73.2 77 46.8
Eucgr.I01259 Eucalyptus grandis HOM05D007227 ORTHO05D002252 2.0e-11 72.8 77 46.8
Psat7g141720 Pisum sativum HOM05D007227 ORTHO05D002252 2.0e-11 72.8 79 40.5
arahy.Tifrunner.gnm1.ann1.9WD8WJ Arachis hypogaea HOM05D007227 ORTHO05D002252 2.6e-11 72.4 94 41.5
arahy.Tifrunner.gnm1.ann1.BHH580 Arachis hypogaea HOM05D007227 ORTHO05D002252 2.6e-11 72.4 83 45.8
CiPaw.06G136700 Carya illinoinensis HOM05D007227 ORTHO05D002252 3.4e-11 72.0 79 46.8
arahy.Tifrunner.gnm1.ann1.16ZZBQ Arachis hypogaea HOM05D007227 ORTHO05D002252 4.5e-11 71.6 77 46.8
Glyma.11G119200 Glycine max HOM05D007227 ORTHO05D002252 4.5e-11 71.6 79 40.5
arahy.Tifrunner.gnm1.ann1.ZTQ30L Arachis hypogaea HOM05D007227 ORTHO05D002252 7.7e-11 70.9 77 46.8
Medtr5g095980 Medicago truncatula HOM05D007227 ORTHO05D002252 7.7e-11 70.9 95 38.9
Psat2g007160 Pisum sativum HOM05D007227 ORTHO05D002252 7.7e-11 70.9 75 44.0
FAN15G1220 Fragaria x ananassa HOM05D007227 ORTHO05D002252 1.3e-10 70.1 85 38.8
Glyma.04G013400 Glycine max HOM05D007227 ORTHO05D002252 1.3e-10 70.1 77 41.6
FvH4_2g08520 Fragaria vesca HOM05D007227 ORTHO05D002252 1.7e-10 69.7 85 37.6
FAN24G3084 Fragaria x ananassa HOM05D007227 ORTHO05D002252 1.7e-10 69.7 85 37.6
FAN27G2103 Fragaria x ananassa HOM05D007227 ORTHO05D002252 1.7e-10 69.7 85 36.5
Glyma.06G013300 Glycine max HOM05D007227 ORTHO05D002252 3.8e-10 68.6 77 41.6
TWI31G1433 Tripterygium wilfordii HOM05D007227 ORTHO05D002252 3.8e-10 68.6 82 48.8
Glyma.02G300900 Glycine max HOM05D007227 ORTHO05D002252 5.0e-10 68.2 79 44.3
Medtr4g069770 Medicago truncatula HOM05D007227 ORTHO05D002252 5.0e-10 68.2 77 42.9
Psat2g007200 Pisum sativum HOM05D007227 ORTHO05D002252 5.0e-10 68.2 75 42.7
CiPaw.05G063200 Carya illinoinensis HOM05D007227 ORTHO05D002252 6.5e-10 67.8 74 45.9
TPR.G8589 Trifolium pratense HOM05D007227 ORTHO05D002252 6.5e-10 67.8 74 39.2
Lsat_1_v5_gn_9_109540 Lactuca sativa HOM05D007227 ORTHO05D002252 1.1e-09 67.0 78 39.7
MD00G1082000 Malus domestica HOM05D007227 ORTHO05D002252 1.1e-09 67.0 85 41.2
GSVIVG01031940001 Vitis vinifera HOM05D007227 ORTHO05D002252 1.1e-09 67.0 82 39.0
Glyma.12G044400 Glycine max HOM05D007227 ORTHO05D002252 1.4e-09 66.6 79 40.5
Oeu014341.1 Olea europaea HOM05D007227 ORTHO05D002252 1.4e-09 66.6 68 47.1
QL11p043287 Quercus lobata HOM05D007227 ORTHO05D002252 1.9e-09 66.2 74 43.2
RcHm_v2.0_Chr6g0263881 Rosa chinensis HOM05D007227 ORTHO05D002252 1.9e-09 66.2 83 38.6
TPR.G9008 Trifolium pratense HOM05D007227 ORTHO05D002252 1.9e-09 66.2 79 39.2
Actinidia00511 Actinidia chinensis HOM05D007227 ORTHO05D002252 2.5e-09 65.9 91 40.7
arahy.Tifrunner.gnm1.ann1.24P8DN Arachis hypogaea HOM05D007227 ORTHO05D002252 2.5e-09 65.9 86 40.7
MSTRG.20093 Avicennia marina HOM05D007227 ORTHO05D002252 2.5e-09 65.9 96 35.4
MSTRG.27703 Avicennia marina HOM05D007227 ORTHO05D002252 2.5e-09 65.9 98 36.7
LjContig00081g0009252 Lotus japonicus HOM05D007227 ORTHO05D002252 3.2e-09 65.5 80 37.5
Phvul.009G024600 Phaseolus vulgaris HOM05D007227 ORTHO05D002252 3.2e-09 65.5 78 42.3
Sabra04G0101600 Salix brachista HOM05D007227 ORTHO05D002252 3.2e-09 65.5 78 44.9
VMungo1127G0518 Vigna mungo HOM05D007227 ORTHO05D002252 3.2e-09 65.5 78 37.2
arahy.Tifrunner.gnm1.ann1.3LC685 Arachis hypogaea HOM05D007227 ORTHO05D002252 4.2e-09 65.1 86 40.7
Lj1g0025376 Lotus japonicus HOM05D007227 ORTHO05D002252 4.2e-09 65.1 77 39.0
MD10G1078100 Malus domestica HOM05D007227 ORTHO05D002252 4.2e-09 65.1 80 41.2
CSS0026369 Camellia sinensis var. sinensis HOM05D007227 ORTHO05D002252 5.5e-09 64.7 73 45.2
Gohir.A03G212200 Gossypium hirsutum HOM05D007227 ORTHO05D002252 5.5e-09 64.7 80 38.8
Sc18g0004580 Simmondsia chinensis HOM05D007556 ORTHO05D002252 5.5e-09 64.7 66 45.5
SalBow3G1687 Salvia bowleyana HOM05D007227 ORTHO05D002252 7.2e-09 64.3 90 38.9
Gohir.D02G233600 Gossypium hirsutum HOM05D007227 ORTHO05D002252 9.4e-09 63.9 80 38.8
Lj3g0002713 Lotus japonicus HOM05D007227 ORTHO05D002252 9.4e-09 63.9 80 40.0
Medtr3g007880 Medicago truncatula HOM05D007227 ORTHO05D002252 1.6e-08 63.2 80 38.8
Gohir.A01G178500 Gossypium hirsutum HOM05D007227 ORTHO05D002252 3.6e-08 62.0 80 40.0
Potri.009G114400 Populus trichocarpa HOM05D007227 ORTHO05D002252 3.6e-08 62.0 78 41.0
Gorai.005G261600 Gossypium raimondii HOM05D007227 ORTHO05D002252 4.7e-08 61.6 80 37.5
Carub.0001s3848 Capsella rubella HOM05D009461 ORTHO05D002252 6.1e-08 61.2 77 42.9
Dinv23539 Davidia involucrata HOM05D007227 ORTHO05D002252 6.1e-08 61.2 89 38.2
Gorai.002G211000 Gossypium raimondii HOM05D007227 ORTHO05D002252 6.1e-08 61.2 80 38.8
Thecc.02G037700 Theobroma cacao HOM05D007227 ORTHO05D002252 6.1e-08 61.2 79 40.5
Lalb_Chr23g0265441 Lupinus albus HOM05D007227 ORTHO05D002252 7.9e-08 60.8 69 40.6
EL10Ac9g21739 Beta vulgaris HOM05D007227 ORTHO05D002252 1.0e-07 60.5 86 37.2
AT1G49310 Arabidopsis thaliana HOM05D009461 ORTHO05D002252 1.8e-07 59.7 83 39.8
AUR62011343 Chenopodium quinoa HOM05D013587 ORTHO05D002252 1.8e-07 59.7 86 36.0
AUR62011345 Chenopodium quinoa HOM05D013587 ORTHO05D002252 1.8e-07 59.7 86 36.0
Gohir.D01G169400 Gossypium hirsutum HOM05D007227 ORTHO05D002252 1.8e-07 59.7 80 37.5
LjContig00272g0019714 Lotus japonicus HOM05D007227 ORTHO05D002252 1.8e-07 59.7 78 35.9
BcaC05g27512 Brassica carinata HOM05D009461 ORTHO05D002252 2.3e-07 59.3 83 43.4
C05p34820 Brassica napus HOM05D009461 ORTHO05D002252 2.3e-07 59.3 83 43.4
Dinv42073 Davidia involucrata HOM05D007227 ORTHO05D002252 2.3e-07 59.3 91 35.2
GSVIVG01031943001 Vitis vinifera HOM05D007556 ORTHO05D002252 2.3e-07 59.3 101 35.6
SalBow6G0041 Salvia bowleyana HOM05D007227 ORTHO05D002252 3.0e-07 58.9 84 34.5
SalBow6G1279 Salvia bowleyana HOM05D007227 ORTHO05D002252 3.0e-07 58.9 84 34.5
AUR62016714 Chenopodium quinoa HOM05D013587 ORTHO05D002252 3.9e-07 58.5 86 36.0
Prupe.8G099800 Prunus persica HOM05D007227 ORTHO05D002252 3.9e-07 58.5 102 35.3
ECA236G1258 Erigeron canadensis HOM05D007227 ORTHO05D002252 5.1e-07 58.2 91 38.5
Nitab4.5_0000959g0110 Nicotiana tabacum HOM05D007556 ORTHO05D002252 5.1e-07 58.2 84 38.1
Potri.004G153200 Populus trichocarpa HOM05D007227 ORTHO05D002252 5.1e-07 58.2 79 40.5
Actinidia00509 Actinidia chinensis HOM05D007556 ORTHO05D002252 6.7e-07 57.8 82 35.4
CSS0037950 Camellia sinensis var. sinensis HOM05D007227 ORTHO05D002252 6.7e-07 57.8 93 34.4
BcaB07g33682 Brassica carinata HOM05D009461 ORTHO05D002252 8.8e-07 57.4 84 41.7
BolC6t35534H Brassica oleracea HOM05D009461 ORTHO05D002252 8.8e-07 57.4 82 39.0
Gohir.D04G164160 Gossypium hirsutum HOM05D007556 ORTHO05D002252 8.8e-07 57.4 89 36.0
Peaxi162Scf00684g00413 Petunia axillaris HOM05D007556 ORTHO05D002252 8.8e-07 57.4 84 38.1
PGR142G1531 Punica granatum HOM05D007227 ORTHO05D002252 8.8e-07 57.4 75 42.7
Nitab4.5_0010789g0020 Nicotiana tabacum HOM05D007556 ORTHO05D002252 1.1e-06 57.0 82 36.6
Sc08g0000440 Simmondsia chinensis HOM05D007227 ORTHO05D002252 1.1e-06 57.0 89 39.3
AL1G56180 Arabidopsis lyrata HOM05D009461 ORTHO05D002252 1.5e-06 56.6 82 37.8
BcaC06g36704 Brassica carinata HOM05D009461 ORTHO05D002252 1.5e-06 56.6 76 43.4
A07p00480 Brassica napus HOM05D009461 ORTHO05D002252 1.5e-06 56.6 76 43.4
C07p00920 Brassica napus HOM05D009461 ORTHO05D002252 1.5e-06 56.6 76 43.4
BolC7t40528H Brassica oleracea HOM05D009461 ORTHO05D002252 1.5e-06 56.6 76 43.4
BraA07t27839Z Brassica rapa HOM05D009461 ORTHO05D002252 1.5e-06 56.6 76 43.4
AL1G56260 Arabidopsis lyrata HOM05D009461 ORTHO05D002252 2.0e-06 56.2 82 39.0
LjContig00081g0025580 Lotus japonicus HOM05D007227 ORTHO05D002252 2.0e-06 56.2 77 35.1
A08p04090 Brassica napus HOM05D009461 ORTHO05D002252 2.6e-06 55.8 82 40.2
BraA08t32434Z Brassica rapa HOM05D009461 ORTHO05D002252 2.6e-06 55.8 82 40.2
Thhalv10011902m.g Eutrema salsugineum HOM05D009461 ORTHO05D002252 2.6e-06 55.8 76 40.8
Nitab4.5_0002892g0020 Nicotiana tabacum HOM05D007556 ORTHO05D002252 2.6e-06 55.8 88 33.0
Cfa005014 Carpinus fangiana HOM05D007556 ORTHO05D002252 3.3e-06 55.5 87 34.5
BcaC08g43126 Brassica carinata HOM05D009461 ORTHO05D002252 4.4e-06 55.1 82 37.8
C06p04010 Brassica napus HOM05D009461 ORTHO05D002252 4.4e-06 55.1 82 37.8
Manes.07G098300 Manihot esculenta HOM05D007556 ORTHO05D002252 4.4e-06 55.1 76 39.5
A06p03910 Brassica napus HOM05D009461 ORTHO05D002252 5.7e-06 54.7 82 37.8
C05p34800 Brassica napus HOM05D009461 ORTHO05D002252 5.7e-06 54.7 83 41.0
C08p04280 Brassica napus HOM05D009461 ORTHO05D002252 5.7e-06 54.7 82 40.2
BolC8t47231H Brassica oleracea HOM05D009461 ORTHO05D002252 5.7e-06 54.7 82 40.2
BraA06t23599Z Brassica rapa HOM05D009461 ORTHO05D002252 5.7e-06 54.7 82 37.8
FAN24G0729 Fragaria x ananassa HOM05D007227 ORTHO05D002252 5.7e-06 54.7 65 38.5
Manes.17G100100 Manihot esculenta HOM05D007227 ORTHO05D002252 5.7e-06 54.7 80 33.8
Nitab4.5_0002168g0010 Nicotiana tabacum HOM05D007556 ORTHO05D002252 5.7e-06 54.7 82 35.4
Ciclev10029608m.g Citrus clementina HOM05D007227 ORTHO05D002252 7.4e-06 54.3 77 40.3
COL.COLO4_17856 Corchorus olitorius HOM05D007227 ORTHO05D002252 7.4e-06 54.3 80 37.5
COL.COLO4_25915 Corchorus olitorius HOM05D007556 ORTHO05D002252 7.4e-06 54.3 71 40.8
Dinv23538 Davidia involucrata HOM05D007556 ORTHO05D002252 7.4e-06 54.3 91 30.8
BcaC07g37067 Brassica carinata HOM05D009461 ORTHO05D002252 9.7e-06 53.9 82 40.2
Cfa005016 Carpinus fangiana HOM05D007556 ORTHO05D002252 9.7e-06 53.9 87 33.3
Nitab4.5_0002102g0030 Nicotiana tabacum HOM05D007556 ORTHO05D002252 9.7e-06 53.9 82 34.1
Potri.009G114800 Populus trichocarpa HOM05D007556 ORTHO05D002252 9.7e-06 53.9 86 38.4
Sp1g36190 Schrenkiella parvula HOM05D009461 ORTHO05D002252 9.7e-06 53.9 76 40.8


User provided reference genes

Program Settings