Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0019909 Sechium edule HOM05D004166 ORTHO05D004992 4.9e-31 137.1 67 100.0
ClCG10G012440 Citrullus lanatus HOM05D004166 ORTHO05D004992 3.9e-28 127.5 67 88.1
CsaV3_3G032210 Cucumis sativus L. HOM05D004166 ORTHO05D004992 5.1e-28 127.1 65 90.8
Prupe.2G012500 Prunus persica HOM05D004166 ORTHO05D004992 1.5e-24 115.5 66 80.3
Thecc.01G411400 Theobroma cacao HOM05D004166 ORTHO05D004992 3.4e-24 114.4 66 80.3
Ciclev10033564m.g Citrus clementina HOM05D004166 ORTHO05D004992 4.5e-24 114.0 66 78.8
Eucgr.J01270 Eucalyptus grandis HOM05D004166 ORTHO05D004992 7.6e-24 113.2 65 76.9
Lalb_Chr01g0008061 Lupinus albus HOM05D004166 ORTHO05D004992 9.9e-24 112.8 66 74.2
Lalb_Chr03g0034051 Lupinus albus HOM05D004166 ORTHO05D004992 9.9e-24 112.8 66 77.3
RcHm_v2.0_Chr1g0315891 Rosa chinensis HOM05D004166 ORTHO05D004992 1.3e-23 112.5 64 81.2
FAN03G1620 Fragaria x ananassa HOM05D004166 ORTHO05D004992 3.8e-23 110.9 65 76.9
FAN06G0104 Fragaria x ananassa HOM05D004166 ORTHO05D004992 4.9e-23 110.5 65 76.9
FAN10G3917 Fragaria x ananassa HOM05D004166 ORTHO05D004992 4.9e-23 110.5 65 76.9
Duzib268G1417 Durio zibethinus HOM05D004166 ORTHO05D004992 6.4e-23 110.2 66 77.3
Gohir.D08G165700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 6.4e-23 110.2 64 78.1
Gorai.004G172800 Gossypium raimondii HOM05D004166 ORTHO05D004992 6.4e-23 110.2 64 78.1
MD02G1312900 Malus domestica HOM05D004166 ORTHO05D004992 6.4e-23 110.2 64 78.1
Sabra09G0045800 Salix brachista HOM05D004166 ORTHO05D004992 1.4e-22 109.0 66 74.2
Manes.07G005600 Manihot esculenta HOM05D004166 ORTHO05D004992 2.4e-22 108.2 66 75.8
Gohir.A08G144700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 3.2e-22 107.8 64 76.6
Potri.009G061800 Populus trichocarpa HOM05D004166 ORTHO05D004992 3.2e-22 107.8 66 74.2
COL.COLO4_23931 Corchorus olitorius HOM05D004166 ORTHO05D004992 4.2e-22 107.5 64 75.0
Cfa010755 Carpinus fangiana HOM05D004166 ORTHO05D004992 1.2e-21 105.9 64 78.1
Glyma.12G237600 Glycine max HOM05D004166 ORTHO05D004992 1.6e-21 105.5 67 76.1
Potri.001G267501 Populus trichocarpa HOM05D004166 ORTHO05D004992 4.6e-21 104.0 66 72.7
Glyma.13G203200 Glycine max HOM05D004166 ORTHO05D004992 6.0e-21 103.6 67 74.6
MD07G1010200 Malus domestica HOM05D004166 ORTHO05D004992 1.8e-20 102.1 64 75.0
MD17G1247100 Malus domestica HOM05D004166 ORTHO05D004992 3.9e-20 100.9 64 73.4
Medtr8g036790 Medicago truncatula HOM05D004166 ORTHO05D004992 3.9e-20 100.9 64 70.3
CSS0000300 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 5.1e-20 100.5 66 71.2
CSS0007311 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 5.1e-20 100.5 66 71.2
Psat4g147280 Pisum sativum HOM05D004166 ORTHO05D004992 5.1e-20 100.5 64 70.3
HanXRQChr16g0524541 Helianthus annuus HOM05D004166 ORTHO05D004992 6.7e-20 100.1 65 70.8
CAN.G1820.4 Capsicum annuum HOM05D004166 ORTHO05D004992 8.7e-20 99.8 65 70.8
Cfa010754 Carpinus fangiana HOM05D004166 ORTHO05D004992 8.7e-20 99.8 64 73.4
CSS0023235 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 1.1e-19 99.4 66 69.7
QL04p006695 Quercus lobata HOM05D004166 ORTHO05D004992 1.5e-19 99.0 64 70.3
QL04p007896 Quercus lobata HOM05D004166 ORTHO05D004992 1.5e-19 99.0 64 70.3
TPR.G1880 Trifolium pratense HOM05D004166 ORTHO05D004992 1.9e-19 98.6 64 68.8
Manes.10G143600 Manihot esculenta HOM05D004166 ORTHO05D004992 3.3e-19 97.8 66 72.7
Lj3g0024132 Lotus japonicus HOM05D004166 ORTHO05D004992 5.6e-19 97.1 64 73.4
Phvul.011G212050 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 1.3e-18 95.9 64 70.3
Glyma.08G155100 Glycine max HOM05D004166 ORTHO05D004992 2.1e-18 95.1 64 65.6
Glyma.15G273800 Glycine max HOM05D004166 ORTHO05D004992 2.1e-18 95.1 64 65.6
Aa31LG10G7180 Aethionema arabicum HOM05D004166 ORTHO05D004992 3.6e-18 94.4 66 65.2
CARHR161830 Cardamine hirsuta HOM05D004166 ORTHO05D004992 6.2e-18 93.6 66 63.6
BcaC02g09282 Brassica carinata HOM05D004166 ORTHO05D004992 1.1e-17 92.8 65 64.6
C04p40870 Brassica napus HOM05D004166 ORTHO05D004992 1.1e-17 92.8 65 64.6
BolC4t25673H Brassica oleracea HOM05D004166 ORTHO05D004992 1.1e-17 92.8 65 64.6
AL5G32660 Arabidopsis lyrata HOM05D004166 ORTHO05D004992 1.4e-17 92.4 66 63.6
Thhalv10011065m.g Eutrema salsugineum HOM05D004166 ORTHO05D004992 1.4e-17 92.4 66 63.6
Sp5g10190 Schrenkiella parvula HOM05D004166 ORTHO05D004992 1.8e-17 92.0 66 63.6
AT3G52105 Arabidopsis thaliana HOM05D004166 ORTHO05D004992 3.1e-17 91.3 66 63.6
A03p48710 Brassica napus HOM05D004166 ORTHO05D004992 4.0e-17 90.9 65 63.1
PGR044G1658 Punica granatum HOM05D004166 ORTHO05D004992 4.0e-17 90.9 63 63.5
BraA04t16423Z Brassica rapa HOM05D004166 ORTHO05D004992 5.3e-17 90.5 65 63.1
Lsat_1_v5_gn_1_107381 Lactuca sativa HOM05D004166 ORTHO05D004992 6.9e-17 90.1 65 60.0
Carub.0005s1843 Capsella rubella HOM05D004166 ORTHO05D004992 9.0e-17 89.7 66 60.6
Phvul.005G020900 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 9.0e-17 89.7 67 62.7
HanXRQChr17g0562911 Helianthus annuus HOM05D004166 ORTHO05D004992 1.2e-16 89.4 65 63.1
BcaB02g08588 Brassica carinata HOM05D004166 ORTHO05D004992 2.0e-16 88.6 60 66.7
CiPaw.13G003800 Carya illinoinensis HOM05D004166 ORTHO05D004992 2.6e-16 88.2 58 70.7
QL07p021398 Quercus lobata HOM05D004166 ORTHO05D004992 3.4e-16 87.8 66 65.2
BraA03t13971Z Brassica rapa HOM05D003531 ORTHO05D004354 9.9e-16 86.3 61 62.3
TAR623G1417 Trochodendron aralioides HOM05D004166 ORTHO05D004992 2.2e-15 85.1 62 64.5
C07p46800 Brassica napus HOM05D004166 ORTHO05D004992 2.9e-15 84.7 56 66.1
BolC7t45197H Brassica oleracea HOM05D004166 ORTHO05D004992 2.9e-15 84.7 56 66.1
Medtr3g028700 Medicago truncatula HOM05D004166 ORTHO05D004992 3.8e-15 84.3 67 62.7
Cfa016852 Carpinus fangiana HOM05D004166 ORTHO05D004992 4.9e-15 84.0 66 62.1
Nn7g36123 Nelumbo nucifera HOM05D005711 ORTHO05D007125 4.9e-15 84.0 58 70.7
Prupe.7G066300 Prunus persica HOM05D004166 ORTHO05D004992 1.9e-14 82.0 67 58.2
MBI01_g18886_MAGBIO Magnolia biondii HOM05D004166 ORTHO05D004992 2.4e-14 81.6 62 66.1
SalBow6G5402 Salvia bowleyana HOM05D004166 ORTHO05D004992 2.4e-14 81.6 67 55.2
SalBow8G1301 Salvia bowleyana HOM05D004166 ORTHO05D004992 2.4e-14 81.6 67 55.2
TPR.G4007 Trifolium pratense HOM05D004166 ORTHO05D004992 3.2e-14 81.3 67 61.2
Dinv24131 Davidia involucrata HOM05D004166 ORTHO05D004992 4.2e-14 80.9 67 61.2
COL.COLO4_28154 Corchorus olitorius HOM05D004166 ORTHO05D004992 5.5e-14 80.5 67 61.2
CiPaw.09G035600 Carya illinoinensis HOM05D004166 ORTHO05D004992 7.1e-14 80.1 66 60.6
RcHm_v2.0_Chr3g0481271 Rosa chinensis HOM05D004166 ORTHO05D004992 7.1e-14 80.1 67 59.7
BolC8t50354H Brassica oleracea HOM05D004166 ORTHO05D004992 9.3e-14 79.7 65 56.9
BraA09t39979Z Brassica rapa HOM05D004166 ORTHO05D004992 9.3e-14 79.7 65 56.9
Potri.016G053400 Populus trichocarpa HOM05D004166 ORTHO05D004992 9.3e-14 79.7 56 69.6
Sc11g0009220 Simmondsia chinensis HOM05D004166 ORTHO05D004992 1.2e-13 79.3 65 56.9
Gohir.A01G196400 Gossypium hirsutum HOM05D004166 ORTHO05D004992 1.6e-13 79.0 67 59.7
Gorai.002G230100 Gossypium raimondii HOM05D004166 ORTHO05D004992 1.6e-13 79.0 67 59.7
HanXRQChr11g0338921 Helianthus annuus HOM05D004166 ORTHO05D004992 1.6e-13 79.0 65 53.8
Manes.08G048600 Manihot esculenta HOM05D004166 ORTHO05D004992 1.6e-13 79.0 67 58.2
MD14G1068000 Malus domestica HOM05D004166 ORTHO05D004992 2.1e-13 78.6 67 58.2
BcaB01g00441 Brassica carinata HOM05D004166 ORTHO05D004992 2.7e-13 78.2 65 55.4
BcaB01g00442 Brassica carinata HOM05D004166 ORTHO05D004992 2.7e-13 78.2 65 55.4
BcaB01g00445 Brassica carinata HOM05D004166 ORTHO05D004992 2.7e-13 78.2 60 58.3
C08p27370 Brassica napus HOM05D004166 ORTHO05D004992 2.7e-13 78.2 65 55.4
SalBow5G4904 Salvia bowleyana HOM05D004166 ORTHO05D004992 2.7e-13 78.2 65 55.4
SalBow8G3607 Salvia bowleyana HOM05D004166 ORTHO05D004992 2.7e-13 78.2 65 55.4
Dinv18078 Davidia involucrata HOM05D002477 ORTHO05D000502 3.5e-13 77.8 64 59.4
Lalb_Chr25g0283111 Lupinus albus HOM05D004166 ORTHO05D004992 3.5e-13 77.8 67 58.2
Nn2g15481 Nelumbo nucifera HOM05D004166 ORTHO05D004992 3.5e-13 77.8 58 65.5
Nn2g15482 Nelumbo nucifera HOM05D004166 ORTHO05D004992 3.5e-13 77.8 58 65.5
HPP92_024883 Vanilla planifolia HOM05D004166 ORTHO05D004992 3.5e-13 77.8 62 64.5
Eucgr.A02389 Eucalyptus grandis HOM05D004166 ORTHO05D004992 4.6e-13 77.4 67 58.2
Gohir.D01G186700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 4.6e-13 77.4 67 58.2
Hma1.2p1_0621F.1_g190840 Hydrangea macrophylla HOM05D004166 ORTHO05D004992 4.6e-13 77.4 62 62.9
Lsat_1_v5_gn_4_31680 Lactuca sativa HOM05D004166 ORTHO05D004992 4.6e-13 77.4 49 73.5
Duzib093G1037 Durio zibethinus HOM05D004166 ORTHO05D004992 6.0e-13 77.0 61 62.3
FAN02G1185 Fragaria x ananassa HOM05D004166 ORTHO05D004992 6.0e-13 77.0 67 56.7
Thecc.05G161200 Theobroma cacao HOM05D002477 ORTHO05D001927 1.0e-12 76.3 66 59.1
CiPaw.10G031600 Carya illinoinensis HOM05D004166 ORTHO05D004992 2.3e-12 75.1 62 59.7
ECA248G3658 Erigeron canadensis HOM05D004166 ORTHO05D004992 2.3e-12 75.1 51 66.7
Ciclev10006904m.g Citrus clementina HOM05D004166 ORTHO05D004992 3.0e-12 74.7 59 57.6
Cc06_g16690 Coffea canephora HOM05D004166 ORTHO05D004992 3.0e-12 74.7 66 53.0
Migut.B01024 Erythranthe guttata HOM05D004166 ORTHO05D004992 3.0e-12 74.7 59 59.3
Migut.N01590 Erythranthe guttata HOM05D004166 ORTHO05D004992 3.0e-12 74.7 64 51.6
Potri.006G054200 Populus trichocarpa HOM05D004166 ORTHO05D004992 3.0e-12 74.7 57 64.9
TAR633G2178 Trochodendron aralioides HOM05D004166 ORTHO05D004992 3.9e-12 74.3 58 60.3
ClCG04G000820 Citrullus lanatus HOM05D004166 ORTHO05D004992 5.1e-12 73.9 61 59.0
FAN09G2989 Fragaria x ananassa HOM05D004166 ORTHO05D004992 5.1e-12 73.9 65 53.8
AUR62024406 Chenopodium quinoa HOM05D004166 ORTHO05D004992 6.7e-12 73.6 62 56.5
AUR62025999 Chenopodium quinoa HOM05D004166 ORTHO05D004992 6.7e-12 73.6 62 56.5
Sc25g0005250 Simmondsia chinensis HOM05D004166 ORTHO05D004992 6.7e-12 73.6 62 59.7
CSS0020291 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 8.7e-12 73.2 62 54.8
CSS0041805 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 8.7e-12 73.2 62 54.8
Migut.B01304 Erythranthe guttata HOM05D004166 ORTHO05D004992 1.1e-11 72.8 59 55.9
MD12G1067900 Malus domestica HOM05D004166 ORTHO05D004992 1.1e-11 72.8 58 60.3
Manes.09G026700 Manihot esculenta HOM05D004166 ORTHO05D004992 1.1e-11 72.8 57 63.2
Hma1.2p1_0293F.1_g116190 Hydrangea macrophylla HOM05D004166 ORTHO05D004992 1.5e-11 72.4 51 68.6
Ah.13g076280 Amaranthus hybridus HOM05D004166 ORTHO05D004992 1.9e-11 72.0 62 54.8
Sed0018203 Sechium edule HOM05D004166 ORTHO05D004992 2.5e-11 71.6 62 56.5
CsaV3_4G031350 Cucumis sativus L. HOM05D004166 ORTHO05D004992 3.3e-11 71.2 61 57.4
TPR.G15223 Trifolium pratense HOM05D004166 ORTHO05D004992 4.3e-11 70.9 66 56.1
Atru.chr11.2657 Acer truncatum HOM05D004166 ORTHO05D004992 7.4e-11 70.1 62 54.8
unitig_699.g19651 Utricularia gibba HOM05D004166 ORTHO05D004992 7.4e-11 70.1 65 52.3
CSS0009527 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 9.6e-11 69.7 53 58.5
CSS0050097 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 9.6e-11 69.7 53 58.5
HanXRQChr13g0390681 Helianthus annuus HOM05D004166 ORTHO05D004992 9.6e-11 69.7 64 56.2
AUR62009381 Chenopodium quinoa HOM05D004166 ORTHO05D004992 3.7e-10 67.8 67 50.7
Sc14g0005090 Simmondsia chinensis HOM05D004166 ORTHO05D004992 4.8e-10 67.4 57 59.6
Sc13g0001900 Simmondsia chinensis HOM05D004166 ORTHO05D004992 1.1e-09 66.2 62 58.1
Lsat_1_v5_gn_5_162620 Lactuca sativa HOM05D004166 ORTHO05D004992 1.4e-09 65.9 64 53.1
Actinidia17245 Actinidia chinensis HOM05D004166 ORTHO05D004992 1.8e-09 65.5 66 48.5
SalBow1G3711 Salvia bowleyana HOM05D004166 ORTHO05D004992 2.4e-09 65.1 58 58.6
AUR62023062 Chenopodium quinoa HOM05D004166 ORTHO05D004992 4.0e-09 64.3 58 53.4
Nitab4.5_0000634g0190 Nicotiana tabacum HOM05D004166 ORTHO05D004992 4.0e-09 64.3 39 79.5
EL10Ac2g04320 Beta vulgaris HOM05D004166 ORTHO05D004992 5.3e-09 63.9 58 51.7
Medtr7g092170 Medicago truncatula HOM05D004166 ORTHO05D004992 6.9e-09 63.5 62 50.0
AUR62027418 Chenopodium quinoa HOM05D004166 ORTHO05D004992 1.5e-08 62.4 67 46.3
BcaNung06092 Brassica carinata HOM05D004166 ORTHO05D004992 3.4e-08 61.2 65 47.7
HanXRQChr01g0008671 Helianthus annuus HOM05D004166 ORTHO05D004992 4.5e-08 60.8 64 46.9
SGA_v2.0_scaffold453G51858 Striga asiatica HOM05D004166 ORTHO05D004992 4.5e-08 60.8 51 54.9
arahy.Tifrunner.gnm1.ann1.H3MDMT Arachis hypogaea HOM05D004166 ORTHO05D004992 5.8e-08 60.5 49 55.1
arahy.Tifrunner.gnm1.ann1.UUFG8W Arachis hypogaea HOM05D004166 ORTHO05D004992 5.8e-08 60.5 49 55.1
SalBow1G3538 Salvia bowleyana HOM05D004166 ORTHO05D004992 5.8e-08 60.5 54 57.4
Actinidia09355 Actinidia chinensis HOM05D004166 ORTHO05D004992 7.6e-08 60.1 66 47.0
Migut.J01778 Erythranthe guttata HOM05D004166 ORTHO05D004992 1.7e-07 58.9 49 55.1
Glyma.03G138700 Glycine max HOM05D004166 ORTHO05D004992 1.7e-07 58.9 62 46.8
Zm00001eb005680 Zea mays HOM05D004166 ORTHO05D004992 1.7e-07 58.9 58 53.4
Os03g0174800 Oryza sativa ssp. japonica HOM05D004166 ORTHO05D004992 2.2e-07 58.5 58 55.2
Zm00001eb402020 Zea mays HOM05D004166 ORTHO05D004992 2.9e-07 58.2 58 53.4
Lalb_Chr20g0110831 Lupinus albus HOM05D004166 ORTHO05D004992 3.8e-07 57.8 62 43.5
Phvul.001G136000 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 4.9e-07 57.4 62 40.3
Zm00001eb256610 Zea mays HOM05D004166 ORTHO05D004992 4.9e-07 57.4 58 51.7
Zm00001eb076920 Zea mays HOM05D004166 ORTHO05D004992 1.1e-06 56.2 58 55.2
Zm00001eb018710 Zea mays HOM05D004166 ORTHO05D004992 1.4e-06 55.8 58 51.7
Lalb_Chr01g0017501 Lupinus albus HOM05D004166 ORTHO05D004992 1.9e-06 55.5 49 51.0
Zm00001eb056460 Zea mays HOM05D004166 ORTHO05D004992 1.9e-06 55.5 58 51.7
Zm00001eb272450 Zea mays HOM05D004166 ORTHO05D004992 1.9e-06 55.5 58 51.7


User provided reference genes

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