Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0019897 Sechium edule HOM05D002914 ORTHO05D003196 4.9e-61 237.7 124 100.0
ClCG08G015580 Citrullus lanatus HOM05D002914 ORTHO05D003196 3.2e-44 181.8 128 77.3
CsaV3_2G028190 Cucumis sativus L. HOM05D002914 ORTHO05D003196 6.7e-42 174.1 127 76.4
MELO3C010895.2 Cucumis melo HOM05D002914 ORTHO05D003196 7.4e-33 144.1 126 66.7
Sed0007891 Sechium edule HOM05D002914 ORTHO05D003196 1.1e-31 140.2 126 63.5
Atru.chr13.614 Acer truncatum HOM05D002914 ORTHO05D003196 1.8e-23 112.8 119 50.4
Medtr3g101240 Medicago truncatula HOM05D002914 ORTHO05D003196 1.6e-22 109.8 106 55.7
TPR.G40737 Trifolium pratense HOM05D002914 ORTHO05D003196 1.6e-22 109.8 121 52.9
TWI36G0119 Tripterygium wilfordii HOM05D002914 ORTHO05D003196 1.7e-21 106.3 119 52.1
Lj1g0002449 Lotus japonicus HOM05D002914 ORTHO05D003196 2.9e-21 105.5 110 53.6
Thecc.08G014700 Theobroma cacao HOM05D002914 ORTHO05D003196 2.9e-21 105.5 120 50.0
Ca_15973_v3 Cicer arietinum L. HOM05D002914 ORTHO05D003196 5.0e-21 104.8 117 53.8
arahy.Tifrunner.gnm1.ann1.HH3ECB Arachis hypogaea HOM05D002914 ORTHO05D003196 1.5e-20 103.2 119 52.1
Duzib052G1256 Durio zibethinus HOM05D002914 ORTHO05D003196 1.5e-20 103.2 114 49.1
FAN15G3578 Fragaria x ananassa HOM05D002914 ORTHO05D003196 1.5e-20 103.2 103 56.3
QL02p006168 Quercus lobata HOM05D002914 ORTHO05D003196 1.9e-20 102.8 127 46.5
FAN20G2785 Fragaria x ananassa HOM05D002914 ORTHO05D003196 4.2e-20 101.7 103 55.3
FvH4_2g35030 Fragaria vesca HOM05D002914 ORTHO05D003196 5.5e-20 101.3 117 51.3
Lalb_Chr23g0266911 Lupinus albus HOM05D002914 ORTHO05D003196 7.2e-20 100.9 122 48.4
Potri.014G035400 Populus trichocarpa HOM05D002914 ORTHO05D003196 1.6e-19 99.8 95 55.8
Lalb_Chr16g0384551 Lupinus albus HOM05D002914 ORTHO05D003196 2.7e-19 99.0 117 48.7
DCAR_022064 Daucus carota HOM05D002914 ORTHO05D003196 6.1e-19 97.8 83 55.4
FAN27G2590 Fragaria x ananassa HOM05D002914 ORTHO05D003196 1.0e-18 97.1 103 53.4
CDE02G0277 Ceratophyllum demersum HOM05D002914 ORTHO05D003196 1.4e-18 96.7 123 46.3
Hma1.2p1_0584F.1_g183120 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 3.0e-18 95.5 84 53.6
Glyma.06G036600 Glycine max HOM05D002914 ORTHO05D003196 5.2e-18 94.7 115 48.7
Dinv42126 Davidia involucrata HOM05D002914 ORTHO05D003196 8.8e-18 94.0 122 45.1
ECA236G0292 Erigeron canadensis HOM05D002914 ORTHO05D003196 8.8e-18 94.0 83 57.8
Migut.B00310 Erythranthe guttata HOM05D002914 ORTHO05D003196 8.8e-18 94.0 78 56.4
Psat5g044840 Pisum sativum HOM05D002914 ORTHO05D003196 1.2e-17 93.6 102 51.0
Glyma.04G036500 Glycine max HOM05D002914 ORTHO05D003196 1.5e-17 93.2 115 47.8
Duzib248G0090 Durio zibethinus HOM05D002914 ORTHO05D003196 2.0e-17 92.8 81 55.6
Nitab4.5_0002673g0030 Nicotiana tabacum HOM05D002914 ORTHO05D003196 2.0e-17 92.8 117 45.3
SGA_v2.0_scaffold58G20610 Striga asiatica HOM05D002914 ORTHO05D003196 2.0e-17 92.8 81 54.3
Gohir.A03G191200 Gossypium hirsutum HOM05D002914 ORTHO05D003196 2.6e-17 92.4 118 48.3
CDE01G0545 Ceratophyllum demersum HOM05D000767 ORTHO05D003196 3.4e-17 92.0 117 46.2
Oeu003691.1 Olea europaea HOM05D002914 ORTHO05D003196 3.4e-17 92.0 101 51.5
PGR083G2546 Punica granatum HOM05D002914 ORTHO05D003196 4.4e-17 91.7 112 50.0
Solyc01g108330.2 Solanum lycopersicum HOM05D002914 ORTHO05D003196 4.4e-17 91.7 126 45.2
Sopen01g050550 Solanum pennellii HOM05D002914 ORTHO05D003196 4.4e-17 91.7 126 45.2
Atru.chr5.2809 Acer truncatum HOM05D002914 ORTHO05D003196 5.7e-17 91.3 116 46.6
Glyma.07G210000 Glycine max HOM05D002914 ORTHO05D003196 5.7e-17 91.3 86 52.3
Medtr4g086780 Medicago truncatula HOM05D002914 ORTHO05D003196 5.7e-17 91.3 77 55.8
Nitab4.5_0000876g0210 Nicotiana tabacum HOM05D002914 ORTHO05D003196 5.7e-17 91.3 110 45.5
CANSAT25G0897 Cannabis sativa HOM05D002914 ORTHO05D003196 7.5e-17 90.9 100 54.0
Manes.05G170100 Manihot esculenta HOM05D002914 ORTHO05D003196 7.5e-17 90.9 117 47.0
Cfa005429 Carpinus fangiana HOM05D002914 ORTHO05D003196 9.8e-17 90.5 114 44.7
TAR628G0868 Trochodendron aralioides HOM05D002914 ORTHO05D003196 9.8e-17 90.5 128 43.8
RcHm_v2.0_Chr6g0259071 Rosa chinensis HOM05D002914 ORTHO05D003196 1.3e-16 90.1 116 44.0
VMungo0251G3532 Vigna mungo HOM05D002914 ORTHO05D003196 1.3e-16 90.1 118 45.8
Eucgr.I01175 Eucalyptus grandis HOM05D002914 ORTHO05D003196 2.2e-16 89.4 99 46.5
Nitab4.5_0000876g0190 Nicotiana tabacum HOM05D002914 ORTHO05D003196 2.8e-16 89.0 107 44.9
Prupe.1G441900 Prunus persica HOM05D002914 ORTHO05D003196 2.8e-16 89.0 119 43.7
RcHm_v2.0_Chr6g0306971 Rosa chinensis HOM05D002914 ORTHO05D003196 2.8e-16 89.0 104 51.9
HanXRQChr16g0509571 Helianthus annuus HOM05D002914 ORTHO05D003196 6.3e-16 87.8 115 44.3
Rhsim05G0080600 Rhododendron simsii HOM05D002914 ORTHO05D003196 6.3e-16 87.8 92 50.0
Sc15g0006440 Simmondsia chinensis HOM05D002914 ORTHO05D003196 8.3e-16 87.4 61 63.9
Gorai.005G240100 Gossypium raimondii HOM05D002914 ORTHO05D003196 1.4e-15 86.7 122 45.1
PGSC0003DMG400025804 Solanum tuberosum HOM05D002914 ORTHO05D003196 1.4e-15 86.7 125 42.4
Aqoxy5G01394 Aquilegia oxysepala HOM05D002914 ORTHO05D003196 1.8e-15 86.3 118 44.1
Gorai.005G104900 Gossypium raimondii HOM05D002914 ORTHO05D003196 1.8e-15 86.3 97 45.4
HanXRQChr04g0128331 Helianthus annuus HOM05D002914 ORTHO05D003196 1.8e-15 86.3 77 54.5
TAR376G1047 Trochodendron aralioides HOM05D002914 ORTHO05D003196 1.8e-15 86.3 129 41.1
Aa31LG5G9350 Aethionema arabicum HOM05D002914 ORTHO05D003196 5.4e-15 84.7 133 41.4
Gohir.D02G092940 Gossypium hirsutum HOM05D002914 ORTHO05D003196 5.4e-15 84.7 97 45.4
Oeu010582.1 Olea europaea HOM05D002914 ORTHO05D003196 5.4e-15 84.7 68 57.4
Cpa.g.sc376.2 Carica papaya HOM05D002914 ORTHO05D003196 9.1e-15 84.0 91 53.8
TWI31G1086 Tripterygium wilfordii HOM05D002914 ORTHO05D003196 9.1e-15 84.0 118 40.7
Oeu003693.1 Olea europaea HOM05D002914 ORTHO05D003196 1.6e-14 83.2 66 57.6
TAR625G1140 Trochodendron aralioides HOM05D002914 ORTHO05D003196 2.7e-14 82.4 103 44.7
Nitab4.5_0002462g0040 Nicotiana tabacum HOM05D002914 ORTHO05D003196 4.5e-14 81.6 93 47.3
Peaxi162Scf00016g00161 Petunia axillaris HOM05D002914 ORTHO05D003196 4.5e-14 81.6 66 59.1
Ciclev10002811m.g Citrus clementina HOM05D002914 ORTHO05D003196 5.9e-14 81.3 95 48.4
Gohir.D02G212150 Gossypium hirsutum HOM05D002914 ORTHO05D003196 5.9e-14 81.3 123 43.1
Hma1.2p1_1589F.1_g292395 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 5.9e-14 81.3 83 49.4
Hma1.2p1_2598F.1_g325150 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 5.9e-14 81.3 83 49.4
Sp4g07710 Schrenkiella parvula HOM05D002914 ORTHO05D003196 7.7e-14 80.9 119 39.5
THA.LOC104803788 Tarenaya hassleriana HOM05D002914 ORTHO05D003196 1.3e-13 80.1 81 46.9
Lalb_Chr09g0328151 Lupinus albus HOM05D002914 ORTHO05D003196 1.7e-13 79.7 85 50.6
Carub.0004s0669 Capsella rubella HOM05D002914 ORTHO05D003196 2.2e-13 79.3 91 44.0
Oeu013680.1 Olea europaea HOM05D002914 ORTHO05D003196 2.2e-13 79.3 95 50.5
Gohir.D06G013700 Gossypium hirsutum HOM05D002914 ORTHO05D003196 3.8e-13 78.6 87 49.4
HPP92_003444 Vanilla planifolia HOM05D002914 ORTHO05D003196 6.5e-13 77.8 93 44.1
Gohir.A06G015600 Gossypium hirsutum HOM05D002914 ORTHO05D003196 8.5e-13 77.4 55 61.8
Gorai.010G016300 Gossypium raimondii HOM05D002914 ORTHO05D003196 8.5e-13 77.4 55 61.8
AL4G19370 Arabidopsis lyrata HOM05D002914 ORTHO05D003196 1.1e-12 77.0 92 43.5
EL10Ac9g21822 Beta vulgaris HOM05D002914 ORTHO05D003196 1.1e-12 77.0 61 59.0
Sed0010504 Sechium edule HOM05D002914 ORTHO05D003196 1.1e-12 77.0 123 40.7
Lj5P206T48 Lonicera japonica HOM05D002914 ORTHO05D003196 1.5e-12 76.6 115 44.3
AT2G26520 Arabidopsis thaliana HOM05D002914 ORTHO05D003196 1.9e-12 76.3 87 42.5
CiPaw.05G054900 Carya illinoinensis HOM05D002914 ORTHO05D003196 1.9e-12 76.3 113 38.9
CsaV3_7G008810 Cucumis sativus L. HOM05D002914 ORTHO05D003196 1.9e-12 76.3 87 49.4
Potri.004G144400 Populus trichocarpa HOM05D002914 ORTHO05D003196 1.9e-12 76.3 123 39.0
ATR0225G004 Amborella trichopoda HOM05D002914 ORTHO05D003196 4.2e-12 75.1 128 43.8
MELO3C028578.2 Cucumis melo HOM05D002914 ORTHO05D003196 4.2e-12 75.1 82 47.6
Nn1g05872 Nelumbo nucifera HOM05D002914 ORTHO05D003196 4.2e-12 75.1 124 41.9
ClCG02G005720 Citrullus lanatus HOM05D002914 ORTHO05D003196 7.2e-12 74.3 82 46.3
arahy.Tifrunner.gnm1.ann1.ZME7HS Arachis hypogaea HOM05D002914 ORTHO05D003196 1.6e-11 73.2 99 43.4
Thecc.02G096100 Theobroma cacao HOM05D002914 ORTHO05D003196 1.6e-11 73.2 114 37.7
arahy.Tifrunner.gnm1.ann1.2E3RSG Arachis hypogaea HOM05D002914 ORTHO05D003196 2.7e-11 72.4 135 34.8
Aqoxy6G00878 Aquilegia oxysepala HOM05D002914 ORTHO05D003196 3.6e-11 72.0 81 50.6
Glyma.02G134900 Glycine max HOM05D002914 ORTHO05D003196 8.0e-11 70.9 82 43.9
Ah.05g168910 Amaranthus hybridus HOM05D002914 ORTHO05D003196 1.4e-10 70.1 86 45.3
COL.COLO4_26446 Corchorus olitorius HOM05D002914 ORTHO05D003196 2.3e-10 69.3 116 40.5
Nn5g30169 Nelumbo nucifera HOM05D002914 ORTHO05D003196 2.3e-10 69.3 110 38.2
FAN20G0574 Fragaria x ananassa HOM05D002914 ORTHO05D003196 3.0e-10 68.9 119 39.5
Potri.009G106300 Populus trichocarpa HOM05D002914 ORTHO05D003196 3.0e-10 68.9 105 38.1
Ca_18662_v3 Cicer arietinum L. HOM05D002914 ORTHO05D003196 4.0e-10 68.6 71 47.9
FvH4_2g06840 Fragaria vesca HOM05D002914 ORTHO05D003196 5.2e-10 68.2 119 38.7
Sabra09G0081200 Salix brachista HOM05D002914 ORTHO05D003196 5.2e-10 68.2 127 37.0
FAN24G0092 Fragaria x ananassa HOM05D002914 ORTHO05D003196 6.8e-10 67.8 120 38.3
SalBow6G6648 Salvia bowleyana HOM05D002914 ORTHO05D003196 6.8e-10 67.8 93 38.7
Phvul.003G294100 Phaseolus vulgaris HOM05D002914 ORTHO05D003196 1.2e-09 67.0 118 35.6
Gohir.A13G037800 Gossypium hirsutum HOM05D002914 ORTHO05D003196 1.5e-09 66.6 114 36.8
HPP92_007074 Vanilla planifolia HOM05D002914 ORTHO05D003196 2.0e-09 66.2 81 49.4
Gohir.D13G036200 Gossypium hirsutum HOM05D002914 ORTHO05D003196 2.6e-09 65.9 114 36.8
CiPaw.06G141400 Carya illinoinensis HOM05D002914 ORTHO05D003196 3.4e-09 65.5 120 38.3
FAN15G1103 Fragaria x ananassa HOM05D002914 ORTHO05D003196 3.4e-09 65.5 119 37.8
Ah.01g020080 Amaranthus hybridus HOM05D002914 ORTHO05D003196 4.4e-09 65.1 82 48.8
Sabra04G0095900 Salix brachista HOM05D002914 ORTHO05D003196 4.4e-09 65.1 116 36.2
Sc08g0000120 Simmondsia chinensis HOM05D002914 ORTHO05D003196 4.4e-09 65.1 92 38.0
Cpa.g.sc62.45 Carica papaya HOM05D002914 ORTHO05D003196 1.3e-08 63.5 125 34.4
PSO675G1122 Papaver somniferum HOM05D000003 ORTHO05D001026 1.3e-08 63.5 55 54.5
COL.COLO4_11718 Corchorus olitorius HOM05D002914 ORTHO05D003196 1.7e-08 63.2 89 39.3
Gorai.013G040900 Gossypium raimondii HOM05D002914 ORTHO05D003196 1.7e-08 63.2 87 39.1
unitig_699.g19875 Utricularia gibba HOM05D002914 ORTHO05D003196 2.2e-08 62.8 62 50.0
Prupe.8G116500 Prunus persica HOM05D002914 ORTHO05D003196 2.8e-08 62.4 80 43.8
Lj4g0007898 Lotus japonicus HOM05D002914 ORTHO05D003196 6.3e-08 61.2 93 43.0
Psat7g121600 Pisum sativum HOM05D002914 ORTHO05D003196 6.3e-08 61.2 83 38.6
Oeu007255.1 Olea europaea HOM05D002914 ORTHO05D003196 8.3e-08 60.8 72 43.1
QL11p038331 Quercus lobata HOM05D002914 ORTHO05D003196 1.1e-07 60.5 102 34.3
CSS0043526 Camellia sinensis var. sinensis HOM05D002914 ORTHO05D003196 1.8e-07 59.7 38 60.5
PGR142G0527 Punica granatum HOM05D002914 ORTHO05D003196 2.4e-07 59.3 77 41.6
Lalb_Chr05g0219001 Lupinus albus HOM05D002914 ORTHO05D003196 4.1e-07 58.5 117 34.2
CSS0030933 Camellia sinensis var. sinensis HOM05D002914 ORTHO05D003196 7.0e-07 57.8 47 48.9
CSS0032479 Camellia sinensis var. sinensis HOM05D002914 ORTHO05D003196 7.0e-07 57.8 47 48.9
PSO170G6047 Papaver somniferum HOM05D002914 ORTHO05D003196 1.6e-06 56.6 94 39.4
Peaxi162Scf00003g01911 Petunia axillaris HOM05D002914 ORTHO05D003196 3.5e-06 55.5 105 32.4
SGA_v2.0_scaffold105G30420 Striga asiatica HOM05D002914 ORTHO05D003196 3.5e-06 55.5 91 35.2
ATR0730G198 Amborella trichopoda HOM05D007960 ORTHO05D010026 4.5e-06 55.1 80 36.2
Potri.006G052500 Populus trichocarpa HOM05D002914 ORTHO05D003196 5.9e-06 54.7 75 38.7
TAR623G0040 Trochodendron aralioides HOM05D002914 ORTHO05D003196 7.7e-06 54.3 67 40.3


User provided reference genes

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