Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0019872 Sechium edule HOM05D005457 ORTHO05D006350 0.0e+00 2526.1 1423 100.0
ClCG03G001030 Citrullus lanatus HOM05D005457 ORTHO05D006350 0.0e+00 1778.1 1529 69.5
CsaV3_1G035890 Cucumis sativus L. HOM05D005457 ORTHO05D006350 0.0e+00 1654.0 1537 67.5
MELO3C020581.2 Cucumis melo HOM05D005457 ORTHO05D006350 0.0e+00 1359.4 1084 69.1
Prupe.6G064800 Prunus persica HOM05D005457 ORTHO05D006350 4.9e-229 799.3 1491 43.0
Haze_24232 Corylus avellana HOM05D005457 ORTHO05D006350 1.8e-223 780.8 1577 42.7
QL01p028955 Quercus lobata HOM05D005457 ORTHO05D006350 7.8e-219 765.4 1535 44.0
Atru.chr3.4038 Acer truncatum HOM05D005457 ORTHO05D006350 6.0e-203 712.6 1520 42.1
Dinv34321 Davidia involucrata HOM05D005457 ORTHO05D006350 7.9e-203 712.2 1704 41.6
MD11G1084500 Malus domestica HOM05D005457 ORTHO05D006350 6.0e-195 686.0 1433 41.2
MD03G1079900 Malus domestica HOM05D005457 ORTHO05D006350 1.5e-190 671.4 1442 41.8
CiPaw.13G084000 Carya illinoinensis HOM05D005457 ORTHO05D006350 2.6e-190 670.6 1555 40.6
Ciclev10027683m.g Citrus clementina HOM05D005457 ORTHO05D006350 8.4e-189 665.6 1528 40.4
FvH4_3g37470 Fragaria vesca HOM05D005457 ORTHO05D006350 1.2e-187 661.8 1482 40.6
FAN25G1264 Fragaria x ananassa HOM05D005457 ORTHO05D006350 4.5e-182 643.3 1509 40.2
FAN11G1716 Fragaria x ananassa HOM05D005457 ORTHO05D006350 1.1e-180 638.6 1503 39.3
FAN16G3594 Fragaria x ananassa HOM05D005457 ORTHO05D006350 6.3e-176 622.9 1494 38.4
Dinv17076 Davidia involucrata HOM05D005457 ORTHO05D006350 8.2e-176 622.5 1650 39.2
Dinv43020 Davidia involucrata HOM05D005457 ORTHO05D006350 8.2e-176 622.5 1650 39.2
Dinv43077 Davidia involucrata HOM05D005457 ORTHO05D006350 8.2e-176 622.5 1650 39.2
FAN21G0431 Fragaria x ananassa HOM05D005457 ORTHO05D006350 4.1e-175 620.2 1496 37.8
Manes.02G123500 Manihot esculenta HOM05D005457 ORTHO05D006350 3.6e-171 607.1 1551 40.5
Hma1.2p1_0543F.1_g175290 Hydrangea macrophylla HOM05D005457 ORTHO05D006350 3.9e-170 603.6 1608 38.4
Gorai.003G125700 Gossypium raimondii HOM05D005457 ORTHO05D006350 4.1e-167 593.6 1478 40.0
Sabra09G0028400 Salix brachista HOM05D005457 ORTHO05D006350 1.5e-166 591.7 1509 39.7
GSVIVG01024823001 Vitis vinifera HOM05D005457 ORTHO05D006350 1.4e-164 585.1 1725 39.3
Thecc.09G309000 Theobroma cacao HOM05D005457 ORTHO05D006350 7.9e-163 579.3 1518 39.7
Gohir.D03G119400 Gossypium hirsutum HOM05D005457 ORTHO05D006350 5.1e-162 576.6 1470 39.7
Gorai.003G125900 Gossypium raimondii HOM05D005457 ORTHO05D006350 7.4e-161 572.8 1518 36.6
Phvul.011G009900 Phaseolus vulgaris HOM05D005457 ORTHO05D006350 3.5e-158 563.9 1482 38.3
Gohir.D03G119500 Gossypium hirsutum HOM05D005457 ORTHO05D006350 5.9e-158 563.1 1487 37.7
Potri.001G247100 Populus trichocarpa HOM05D005457 ORTHO05D006350 8.5e-157 559.3 1532 36.7
Lj1C143T9 Lonicera japonica HOM05D005457 ORTHO05D006350 3.2e-156 557.4 1550 35.9
Gohir.A03G047600 Gossypium hirsutum HOM05D005457 ORTHO05D006350 7.2e-156 556.2 1529 35.6
arahy.Tifrunner.gnm1.ann1.L17SH6 Arachis hypogaea HOM05D005457 ORTHO05D006350 5.3e-151 540.0 1475 39.4
Lalb_Chr01g0000381 Lupinus albus HOM05D005457 ORTHO05D006350 2.2e-144 518.1 1468 38.8
Glyma.12G007800 Glycine max HOM05D005457 ORTHO05D006350 1.3e-141 508.8 1501 36.9
Gohir.A03G047700 Gossypium hirsutum HOM05D005457 ORTHO05D006350 5.5e-140 503.4 1471 37.5
arahy.Tifrunner.gnm1.ann1.U9UY67 Arachis hypogaea HOM05D005457 ORTHO05D006350 1.2e-139 502.3 1467 38.9
VMungo1127G1417 Vigna mungo HOM05D005457 ORTHO05D006350 2.1e-139 501.5 1484 37.1
vmacro03007 Vaccinium macrocarpon HOM05D005457 ORTHO05D006350 1.2e-137 495.7 1544 35.9
Nn2g13569 Nelumbo nucifera HOM05D005457 ORTHO05D006350 4.7e-131 473.8 1757 35.3
Peaxi162Scf00433g00116 Petunia axillaris HOM05D005457 ORTHO05D006350 1.8e-130 471.9 1550 34.3
Lj3g0007084 Lotus japonicus HOM05D005457 ORTHO05D006350 2.3e-130 471.5 1471 37.7
Sc12g0001060 Simmondsia chinensis HOM05D005457 ORTHO05D006350 4.0e-130 470.7 1535 37.5
Ca_19579_v3 Cicer arietinum L. HOM05D005457 ORTHO05D006350 3.4e-129 467.6 1470 38.3
Solyc09g031650.3 Solanum lycopersicum HOM05D005457 ORTHO05D006350 7.5e-129 466.5 1507 35.6
Rhsim13G0075000 Rhododendron simsii HOM05D005457 ORTHO05D006350 4.1e-127 460.7 1551 34.2
Sopen09g014590 Solanum pennellii HOM05D005457 ORTHO05D006350 5.4e-127 460.3 1509 34.3
Psat7g154880 Pisum sativum HOM05D005457 ORTHO05D006350 9.2e-127 459.5 1499 34.5
TAR369G0749 Trochodendron aralioides HOM05D005457 ORTHO05D006350 1.0e-125 456.1 1797 33.6
Aqoxy1G00759 Aquilegia oxysepala HOM05D005457 ORTHO05D006350 3.0e-125 454.5 1582 36.9
Glyma.09G228800 Glycine max HOM05D005457 ORTHO05D006350 8.0e-123 446.4 1460 35.3
EL10Ac7g16099 Beta vulgaris HOM05D005457 ORTHO05D006350 1.4e-122 445.7 1580 36.3
Hund11609 Selenicereus undatus HOM05D005457 ORTHO05D006350 5.2e-122 443.7 1530 37.7
Cc00_g21960 Coffea canephora HOM05D005457 ORTHO05D006350 7.0e-119 433.3 1552 35.8
ECA247G2917 Erigeron canadensis HOM05D005457 ORTHO05D006350 3.0e-117 427.9 1466 35.4
CAN.G1002.16 Capsicum annuum HOM05D005457 ORTHO05D006350 8.6e-117 426.4 1498 34.6
Ah.14g082630 Amaranthus hybridus HOM05D005457 ORTHO05D006350 2.3e-114 418.3 1530 38.2
Lsat_1_v5_gn_9_25441 Lactuca sativa HOM05D005457 ORTHO05D006350 6.8e-114 416.8 1491 35.6
SHI05894 Sapria himalayana HOM05D005457 ORTHO05D006350 2.2e-112 411.8 1552 34.5
Medtr4g037575 Medicago truncatula HOM05D005457 ORTHO05D006350 2.3e-109 401.7 1477 36.5
Nn2g11331 Nelumbo nucifera HOM05D005457 ORTHO05D006350 8.6e-109 399.8 1738 34.1
CSS0049881 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 4.3e-108 397.5 1250 38.1
COL.COLO4_19073 Corchorus olitorius HOM05D005457 ORTHO05D006350 8.9e-106 389.8 1419 29.7
RcHm_v2.0_Chr5g0067371 Rosa chinensis HOM05D005457 ORTHO05D006350 5.8e-105 387.1 897 43.9
HanXRQChr08g0237081 Helianthus annuus HOM05D005457 ORTHO05D006350 4.9e-104 384.0 1503 34.4
TPR.G3642 Trifolium pratense HOM05D005457 ORTHO05D006350 1.9e-103 382.1 1486 33.8
AUR62001711 Chenopodium quinoa HOM05D005457 ORTHO05D006350 5.1e-101 374.0 1515 31.0
Potri.009G040500 Populus trichocarpa HOM05D005457 ORTHO05D006350 1.6e-99 369.0 1150 33.3
SalBow2G3533 Salvia bowleyana HOM05D005457 ORTHO05D006350 1.5e-97 362.5 1494 31.8
CSS0035455 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 5.8e-97 360.5 1213 33.0
DCAR_027735 Daucus carota HOM05D005457 ORTHO05D006350 5.8e-97 360.5 1488 32.3
THA.LOC104799410 Tarenaya hassleriana HOM05D005457 ORTHO05D006350 5.6e-84 317.4 1449 32.4
SGA_v2.0_scaffold199G41161 Striga asiatica HOM05D005457 ORTHO05D006350 3.6e-83 314.7 1530 30.8
TAR623G1178 Trochodendron aralioides HOM05D005457 ORTHO05D006350 5.8e-81 307.4 241 64.7
RcHm_v2.0_Chr5g0067361 Rosa chinensis HOM05D005457 ORTHO05D006350 7.6e-81 307.0 396 49.0
Nitab4.5_0000752g0010 Nicotiana tabacum HOM05D005457 ORTHO05D006350 1.7e-80 305.8 1248 33.3
PSO782G3368 Papaver somniferum HOM05D005457 ORTHO05D006350 1.7e-80 305.8 1465 32.9
DCAR_027739 Daucus carota HOM05D005457 ORTHO05D006350 7.1e-79 300.4 1526 27.7
Migut.N00905 Erythranthe guttata HOM05D005457 ORTHO05D006350 1.0e-77 296.6 1457 31.3
CSS0006949 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 5.1e-77 294.3 974 32.0
Cpa.g.sc112.89 Carica papaya HOM05D005457 ORTHO05D006350 4.8e-75 287.7 673 47.4
Lj2C1073G13 Lonicera japonica HOM05D005457 ORTHO05D006350 1.1e-74 286.6 224 67.9
PSO170G6745 Papaver somniferum HOM05D005457 ORTHO05D006350 1.5e-73 282.7 1446 32.0
DCAR_027737 Daucus carota HOM05D005457 ORTHO05D006350 1.0e-72 280.0 1461 27.9
Nitab4.5_0006476g0010 Nicotiana tabacum HOM05D005457 ORTHO05D006350 1.9e-71 275.8 1188 30.7
ATR0618G328 Amborella trichopoda HOM05D005457 ORTHO05D006350 9.3e-71 273.5 1668 31.9
Zm00001eb159160 Zea mays HOM05D005457 ORTHO05D006350 1.5e-68 266.2 146 80.8
Actinidia25123 Actinidia chinensis HOM05D005457 ORTHO05D006350 2.1e-67 262.3 959 29.9
HPP92_001490 Vanilla planifolia HOM05D005457 ORTHO05D006350 1.2e-65 256.5 1728 28.9
Zm00001eb358910 Zea mays HOM05D005457 ORTHO05D006350 4.5e-65 254.6 239 56.1
Eucgr.B02283 Eucalyptus grandis HOM05D005457 ORTHO05D006350 1.0e-64 253.4 1139 29.5
MBI14_g32924_MAGBIO Magnolia biondii HOM05D005457 ORTHO05D006350 6.1e-62 244.2 140 76.4
Lj2A1073T53 Lonicera japonica HOM05D005457 ORTHO05D006350 1.8e-61 242.7 1177 29.5
Manes.01G166000 Manihot esculenta HOM05D005457 ORTHO05D006350 6.1e-54 217.6 792 30.4
A03p11920 Brassica napus HOM05D005457 ORTHO05D006350 1.5e-49 203.0 226 49.6
MBI14_g32923_MAGBIO Magnolia biondii HOM05D005457 ORTHO05D006350 7.7e-49 200.7 628 32.0
BolC3t13849H Brassica oleracea HOM05D005457 ORTHO05D006350 5.5e-47 194.5 234 48.3
PGSC0003DMG400006701 Solanum tuberosum HOM05D005457 ORTHO05D006350 5.5e-47 194.5 1139 28.1
Actinidia25125 Actinidia chinensis HOM05D005457 ORTHO05D006350 1.2e-46 193.4 99 83.8
CDE09G0137 Ceratophyllum demersum HOM05D000076 ORTHO05D001377 1.0e-45 190.3 103 74.8
AUR62020069 Chenopodium quinoa HOM05D005457 ORTHO05D006350 2.0e-44 186.0 1102 27.1
Oeu017421.1 Olea europaea HOM05D005457 ORTHO05D006350 5.7e-44 184.5 403 36.0
Psat5g196760 Pisum sativum HOM05D005457 ORTHO05D002728 1.3e-43 183.3 164 60.4
BcaB08g36300 Brassica carinata HOM05D012589 ORTHO05D006350 1.9e-39 169.5 217 44.2
Actinidia08557 Actinidia chinensis HOM05D005457 ORTHO05D006350 8.0e-38 164.1 699 27.8
SEGI_21152 Sequoiadendron giganteum HOM05D005457 ORTHO05D006350 6.7e-37 161.0 178 48.9
TAR623G1322 Trochodendron aralioides HOM05D005457 ORTHO05D006350 7.5e-36 157.5 452 32.1
BcaB01g04624 Brassica carinata HOM05D005457 ORTHO05D006350 9.7e-36 157.1 110 63.6
BraA03t10504Z Brassica rapa HOM05D005457 ORTHO05D006350 2.8e-35 155.6 242 41.7
CDE02G3816 Ceratophyllum demersum HOM05D034644 ORTHO05D006350 4.1e-34 151.8 676 28.3
Prupe.6G064700 Prunus persica HOM05D005457 ORTHO05D006350 4.1e-34 151.8 683 33.5
CSS0043795 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 3.5e-33 148.7 85 80.0
CSS0046602 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 3.5e-33 148.7 85 80.0
Cpa.g.sc112.91 Carica papaya HOM05D005457 ORTHO05D006350 8.5e-32 144.1 118 62.7
Cpa.g.sc112.90 Carica papaya HOM05D005457 ORTHO05D006350 9.4e-31 140.6 708 28.4
Duzib170G0589 Durio zibethinus HOM05D005457 ORTHO05D006350 6.3e-27 127.9 316 34.5
Oeu002456.1 Olea europaea HOM05D005457 ORTHO05D006350 2.0e-25 122.9 705 35.6
CDE09G0768 Ceratophyllum demersum HOM05D005457 ORTHO05D006350 4.5e-25 121.7 127 54.3
Actinidia08559 Actinidia chinensis HOM05D005457 ORTHO05D006350 3.6e-22 112.1 96 59.4
unitig_27.g24807 Utricularia gibba HOM05D005457 ORTHO05D006350 7.0e-18 97.8 158 39.2
Duzib170G0080 Durio zibethinus HOM05D005457 ORTHO05D006350 3.5e-17 95.5 820 31.1
CBR_g29779 Chara braunii HOM05D005457 ORTHO05D006350 1.3e-16 93.6 136 31.6
CBR_g49555 Chara braunii HOM05D005457 ORTHO05D006350 3.3e-15 89.0 140 27.1
CBR_g34581 Chara braunii HOM05D005457 ORTHO05D006350 9.5e-15 87.4 131 32.8
CBR_g34582 Chara braunii HOM05D005457 ORTHO05D006350 1.8e-13 83.2 115 33.0
unitig_27.g24810 Utricularia gibba HOM05D005457 ORTHO05D006350 1.8e-13 83.2 199 34.2
CBR_g44392 Chara braunii HOM05D005457 ORTHO05D006350 2.3e-13 82.8 114 34.2
CBR_g34583 Chara braunii HOM05D005457 ORTHO05D006350 5.2e-13 81.6 114 33.3
Psat7g193760 Pisum sativum HOM05D005457 ORTHO05D006350 2.0e-09 69.7 246 31.3
Os12g0155300 Oryza sativa ssp. japonica HOM05D005457 ORTHO05D006350 3.0e-08 65.9 324 28.1
PGSC0003DMG400009632 Solanum tuberosum HOM05D005457 ORTHO05D006350 6.6e-08 64.7 43 65.1
TAR623G0390 Trochodendron aralioides HOM05D005457 ORTHO05D006350 7.3e-07 61.2 385 27.0
C09p51180 Brassica napus HOM05D012589 ORTHO05D024353 3.6e-06 58.9 197 32.0


User provided reference genes

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