Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0019770 Sechium edule HOM05D004920 ORTHO05D005998 5.8e-138 494.2 245 100.0
ClCG01G023480 Citrullus lanatus HOM05D004920 ORTHO05D005998 2.9e-121 438.7 243 88.9
CsaV3_6G050600 Cucumis sativus L. HOM05D004920 ORTHO05D005998 6.7e-118 427.6 243 86.4
Sed0013972 Sechium edule HOM05D004920 ORTHO05D005998 5.1e-110 401.4 232 84.1
CiPaw.09G066500 Carya illinoinensis HOM05D004920 ORTHO05D005998 7.1e-104 380.9 248 75.8
CANSAT35G1037 Cannabis sativa HOM05D004920 ORTHO05D005998 1.5e-101 373.2 250 74.0
Cfa000557 Carpinus fangiana HOM05D004920 ORTHO05D005998 3.3e-101 372.1 247 72.1
Haze_06318 Corylus avellana HOM05D004920 ORTHO05D005998 4.3e-101 371.7 247 72.1
MELO3C007238.2 Cucumis melo HOM05D004920 ORTHO05D005998 4.3e-101 371.7 243 78.6
TPR.G17014 Trifolium pratense HOM05D004920 ORTHO05D005998 8.2e-100 367.5 240 74.2
Dinv40630 Davidia involucrata HOM05D004920 ORTHO05D005998 1.1e-99 367.1 247 73.3
VMungo1127G0753 Vigna mungo HOM05D004920 ORTHO05D005998 1.8e-99 366.3 208 82.2
Glyma.12G114600 Glycine max HOM05D004920 ORTHO05D005998 1.5e-98 363.2 209 80.4
Phvul.001G005700 Phaseolus vulgaris HOM05D004920 ORTHO05D005998 2.0e-98 362.8 208 80.8
Ca_10660_v3 Cicer arietinum L. HOM05D004920 ORTHO05D005998 3.4e-98 362.1 243 72.8
Peaxi162Scf00367g00049 Petunia axillaris HOM05D004920 ORTHO05D005998 3.4e-98 362.1 235 74.9
Ciclev10016425m.g Citrus clementina HOM05D004920 ORTHO05D005998 7.6e-98 360.9 243 72.8
Oeu043091.1 Olea europaea HOM05D004920 ORTHO05D005998 1.3e-97 360.1 240 72.5
TAR624G0520 Trochodendron aralioides HOM05D004920 ORTHO05D005998 1.3e-97 360.1 246 71.5
Peaxi162Scf00016g00346 Petunia axillaris HOM05D004920 ORTHO05D005998 2.2e-97 359.4 226 77.0
Lj4g0024893 Lotus japonicus HOM05D004920 ORTHO05D005998 2.9e-97 359.0 243 71.2
Nn2g14559 Nelumbo nucifera HOM05D004920 ORTHO05D005998 2.9e-97 359.0 217 78.3
Potri.004G052200 Populus trichocarpa HOM05D004920 ORTHO05D005998 5.0e-97 358.2 239 72.8
Actinidia07625 Actinidia chinensis HOM05D004920 ORTHO05D005998 6.5e-97 357.8 246 71.5
Solyc02g031770.4 Solanum lycopersicum HOM05D004920 ORTHO05D005998 1.4e-96 356.7 226 76.1
Manes.17G051900 Manihot esculenta HOM05D004920 ORTHO05D005998 2.5e-96 355.9 235 74.0
Cc02_g14330 Coffea canephora HOM05D004920 ORTHO05D005998 3.2e-96 355.5 210 78.1
Sopen02g010080 Solanum pennellii HOM05D004920 ORTHO05D005998 3.2e-96 355.5 226 75.7
FvH4_3g08250 Fragaria vesca HOM05D004920 ORTHO05D005998 5.5e-96 354.8 245 70.6
FAN11G1044 Fragaria x ananassa HOM05D004920 ORTHO05D005998 5.5e-96 354.8 245 70.6
FAN16G1146 Fragaria x ananassa HOM05D004920 ORTHO05D005998 5.5e-96 354.8 245 70.6
Rhsim02G0138400 Rhododendron simsii HOM05D004920 ORTHO05D005998 5.5e-96 354.8 247 72.5
Atru.chr10.1743 Acer truncatum HOM05D004920 ORTHO05D005998 7.2e-96 354.4 245 69.0
Dinv36435 Davidia involucrata HOM05D004920 ORTHO05D005998 7.2e-96 354.4 235 72.8
Sabra04G0033000 Salix brachista HOM05D004920 ORTHO05D005998 7.2e-96 354.4 239 73.2
Oeu025561.1 Olea europaea HOM05D004920 ORTHO05D005998 9.3e-96 354.0 240 72.1
MD05G1306300 Malus domestica HOM05D004920 ORTHO05D005998 1.2e-95 353.6 249 70.3
Nitab4.5_0000138g0010 Nicotiana tabacum HOM05D004920 ORTHO05D005998 1.2e-95 353.6 257 69.6
RcHm_v2.0_Chr5g0009901 Rosa chinensis HOM05D004920 ORTHO05D005998 1.6e-95 353.2 248 69.8
TWI38G1999 Tripterygium wilfordii HOM05D004920 ORTHO05D005998 1.6e-95 353.2 211 78.2
FAN03G1929 Fragaria x ananassa HOM05D004920 ORTHO05D005998 2.1e-95 352.8 245 71.0
FvH4_7g02080 Fragaria vesca HOM05D004920 ORTHO05D005998 3.6e-95 352.1 245 70.2
FAN06G4868 Fragaria x ananassa HOM05D004920 ORTHO05D005998 3.6e-95 352.1 245 70.2
Duzib235G1063 Durio zibethinus HOM05D004920 ORTHO05D005998 4.6e-95 351.7 247 69.6
GSVIVG01021153001 Vitis vinifera HOM05D004920 ORTHO05D005998 4.6e-95 351.7 243 72.0
Lalb_Chr07g0189681 Lupinus albus HOM05D004920 ORTHO05D005998 7.9e-95 350.9 252 69.0
CAN.G1961.2 Capsicum annuum HOM05D004920 ORTHO05D005998 1.3e-94 350.1 244 70.5
Hma1.2p1_0155F.1_g068520 Hydrangea macrophylla HOM05D004920 ORTHO05D005998 1.3e-94 350.1 246 70.3
Gohir.D01G045600 Gossypium hirsutum HOM05D004920 ORTHO05D005998 2.3e-94 349.4 206 81.1
Thecc.06G177000 Theobroma cacao HOM05D004920 ORTHO05D005998 2.3e-94 349.4 221 74.7
Medtr4g087955 Medicago truncatula HOM05D004920 ORTHO05D005998 3.0e-94 349.0 240 70.0
Gohir.D05G160000 Gossypium hirsutum HOM05D004920 ORTHO05D005998 5.1e-94 348.2 218 76.6
MD10G1285300 Malus domestica HOM05D004920 ORTHO05D005998 6.7e-94 347.8 249 68.3
Gohir.A05G157100 Gossypium hirsutum HOM05D004920 ORTHO05D005998 8.7e-94 347.4 217 76.5
Gorai.002G065200 Gossypium raimondii HOM05D004920 ORTHO05D005998 1.1e-93 347.1 206 81.1
Cpa.g.sc80.25 Carica papaya HOM05D004920 ORTHO05D005998 1.5e-93 346.7 244 69.7
MSTRG.14155 Avicennia marina HOM05D004920 ORTHO05D005998 9.7e-93 344.0 243 69.5
SGA_v2.0_scaffold16G07660 Striga asiatica HOM05D004920 ORTHO05D005998 1.6e-92 343.2 241 70.1
PGR004G0415 Punica granatum HOM05D004920 ORTHO05D005998 6.3e-92 341.3 227 74.4
PGR046G0004 Punica granatum HOM05D004920 ORTHO05D005998 6.3e-92 341.3 227 74.4
Eucgr.D00572 Eucalyptus grandis HOM05D004920 ORTHO05D005998 8.2e-92 340.9 212 75.0
MBI07_g06434_MAGBIO Magnolia biondii HOM05D004920 ORTHO05D005998 8.2e-92 340.9 203 78.8
Ah.05g178940 Amaranthus hybridus HOM05D004920 ORTHO05D005998 2.4e-91 339.3 205 77.1
Aqoxy1G02218 Aquilegia oxysepala HOM05D004920 ORTHO05D005998 4.1e-91 338.6 248 67.3
TPR.G16259 Trifolium pratense HOM05D004920 ORTHO05D005998 6.9e-91 337.8 208 74.5
Rhsim06G0035100 Rhododendron simsii HOM05D004920 ORTHO05D005998 9.1e-91 337.4 261 68.2
CDE02G3849 Ceratophyllum demersum HOM05D004920 ORTHO05D005998 3.4e-90 335.5 204 77.5
DCAR_007975 Daucus carota HOM05D004920 ORTHO05D005998 3.4e-90 335.5 210 74.3
Migut.M01075 Erythranthe guttata HOM05D004920 ORTHO05D005998 3.4e-90 335.5 211 76.8
Hund21192 Selenicereus undatus HOM05D004920 ORTHO05D005998 7.7e-90 334.3 245 66.9
Aa31LG9G13860 Aethionema arabicum HOM05D004920 ORTHO05D005998 1.3e-89 333.6 246 66.3
BcaC02g07783 Brassica carinata HOM05D004920 ORTHO05D005998 1.3e-89 333.6 247 66.4
PSO541G3866 Papaver somniferum HOM05D004920 ORTHO05D005998 5.0e-89 331.6 218 71.6
A04p26140 Brassica napus HOM05D004920 ORTHO05D005998 8.5e-89 330.9 245 65.7
PSO675G0526 Papaver somniferum HOM05D004920 ORTHO05D005998 1.1e-88 330.5 218 71.6
Thhalv10017133m.g Eutrema salsugineum HOM05D004920 ORTHO05D005998 1.9e-88 329.7 251 64.1
PSO063G1259 Papaver somniferum HOM05D004920 ORTHO05D005998 1.9e-88 329.7 244 66.0
C04p63520 Brassica napus HOM05D004920 ORTHO05D005998 2.5e-88 329.3 245 65.3
BraA04t18117Z Brassica rapa HOM05D004920 ORTHO05D005998 2.5e-88 329.3 245 65.3
AUR62031127 Chenopodium quinoa HOM05D004920 ORTHO05D005998 4.2e-88 328.6 201 75.1
ECA236G4389 Erigeron canadensis HOM05D004920 ORTHO05D005998 9.4e-88 327.4 194 79.9
SGA_v2.0_scaffold341G49353 Striga asiatica HOM05D004920 ORTHO05D005998 9.4e-88 327.4 223 70.9
HanXRQChr15g0481321 Helianthus annuus HOM05D004920 ORTHO05D005998 1.2e-87 327.0 199 77.9
EL10Ac1g01008 Beta vulgaris HOM05D004920 ORTHO05D005998 1.6e-87 326.6 203 74.4
FAN25G0865 Fragaria x ananassa HOM05D004920 ORTHO05D005998 1.6e-87 326.6 292 58.2
AUR62014920 Chenopodium quinoa HOM05D004920 ORTHO05D005998 2.1e-87 326.2 203 73.9
Sc17g0005830 Simmondsia chinensis HOM05D004920 ORTHO05D005998 2.1e-87 326.2 245 64.5
BolC4t27823H Brassica oleracea HOM05D004920 ORTHO05D005998 2.7e-87 325.9 247 64.4
Lsat_1_v5_gn_7_23761 Lactuca sativa HOM05D004920 ORTHO05D005998 2.7e-87 325.9 239 67.4
AT2G34050 Arabidopsis thaliana HOM05D004920 ORTHO05D005998 3.6e-87 325.5 252 63.9
Carub.0004s1568 Capsella rubella HOM05D004920 ORTHO05D005998 3.6e-87 325.5 247 65.6
Sp4g16400 Schrenkiella parvula HOM05D004920 ORTHO05D005998 1.4e-86 323.6 248 65.3
CARHR128130 Cardamine hirsuta HOM05D004920 ORTHO05D005998 2.3e-86 322.8 253 62.5
A05p11610 Brassica napus HOM05D004920 ORTHO05D005998 3.9e-86 322.0 244 65.6
BraA05t20108Z Brassica rapa HOM05D004920 ORTHO05D005998 3.9e-86 322.0 244 65.6
AL4G29930 Arabidopsis lyrata HOM05D004920 ORTHO05D005998 5.1e-86 321.6 204 72.5
THA.LOC104812631 Tarenaya hassleriana HOM05D004920 ORTHO05D005998 6.7e-86 321.2 207 73.4
C04p15060 Brassica napus HOM05D004920 ORTHO05D005998 1.1e-85 320.5 249 63.1
BolC4t23082H Brassica oleracea HOM05D004920 ORTHO05D005998 3.3e-85 318.9 249 63.9
BcaB02g10610 Brassica carinata HOM05D004920 ORTHO05D005998 9.7e-85 317.4 204 71.6
HPP92_018237 Vanilla planifolia HOM05D004920 ORTHO05D005998 9.7e-85 317.4 251 61.8
BcaB06g28727 Brassica carinata HOM05D004920 ORTHO05D005998 6.3e-84 314.7 204 72.5
Nitab4.5_0008952g0010 Nicotiana tabacum HOM05D004920 ORTHO05D005998 1.4e-83 313.5 324 52.8
Lj7P478G59 Lonicera japonica HOM05D004920 ORTHO05D005998 2.7e-79 299.3 172 80.2
Gorai.009G165000 Gossypium raimondii HOM05D004920 ORTHO05D005998 3.0e-78 295.8 218 67.9
ATR0712G057 Amborella trichopoda HOM05D004920 ORTHO05D005998 3.8e-73 278.9 204 65.7
vmacro15953 Vaccinium macrocarpon HOM05D004920 ORTHO05D005998 2.1e-71 273.1 309 51.5
FAN21G0445 Fragaria x ananassa HOM05D004920 ORTHO05D005998 7.5e-69 264.6 285 52.6
Glyma.06G291400 Glycine max HOM05D004920 ORTHO05D005998 1.3e-68 263.8 158 79.7
THA.LOC104814688 Tarenaya hassleriana HOM05D004920 ORTHO05D005998 3.7e-68 262.3 174 70.7
QL04p069154 Quercus lobata HOM05D004920 ORTHO05D005998 9.4e-64 247.7 136 85.3
BcaB06g28732 Brassica carinata HOM05D004920 ORTHO05D005998 1.8e-59 233.4 175 64.6
AagrBONN_evm.TU.Sc2ySwM_228.2942 Anthoceros agrestis HOM05D004920 ORTHO05D005998 6.5e-57 224.9 189 54.0
DCAR_004027 Daucus carota HOM05D004920 ORTHO05D005998 4.2e-56 222.2 247 50.6
Mapoly0023s0159 Marchantia polymorpha HOM05D004920 ORTHO05D005998 7.2e-56 221.5 189 55.0
Pp3c14_19140 Physcomitrium patens HOM05D004920 ORTHO05D005998 2.1e-55 219.9 192 52.1
SEGI_15656 Sequoiadendron giganteum HOM05D004920 ORTHO05D005998 4.7e-55 218.8 145 69.7
Glyma.04G173800 Glycine max HOM05D004920 ORTHO05D005998 1.6e-50 203.8 119 82.4
BcaC01g05809 Brassica carinata HOM05D004920 ORTHO05D005998 4.7e-47 192.2 154 60.4
SMO196G0025 Selaginella moellendorffii HOM05D004920 ORTHO05D005998 2.0e-45 186.8 181 46.4
Prupe.4G056300 Prunus persica HOM05D004920 ORTHO05D005998 3.7e-44 182.6 147 61.9
BolC3t14602H Brassica oleracea HOM05D004920 ORTHO05D005998 4.9e-44 182.2 169 55.0
SHI18442 Sapria himalayana HOM05D004920 ORTHO05D005998 4.9e-44 182.2 194 49.0
COL.COLO4_31383 Corchorus olitorius HOM05D004920 ORTHO05D005998 1.1e-43 181.0 106 80.2
CAN.G160.23 Capsicum annuum HOM05D004920 ORTHO05D005998 1.2e-42 177.6 142 62.0
TAR626G0293 Trochodendron aralioides HOM05D004920 ORTHO05D005998 8.6e-41 171.4 100 79.0
Cpa.g.sc80.22 Carica papaya HOM05D004920 ORTHO05D005998 1.5e-40 170.6 100 81.0
Ca_26043_v3 Cicer arietinum L. HOM05D004920 ORTHO05D005998 1.5e-40 170.6 100 80.0
unitig_60.g25415 Utricularia gibba HOM05D004920 ORTHO05D005998 6.2e-39 165.2 97 81.4
Zm00001eb237640 Zea mays HOM05D004920 ORTHO05D005998 1.3e-33 147.5 141 52.5
Cpa.g.sc12.156 Carica papaya HOM05D004920 ORTHO05D005998 3.9e-33 146.0 87 79.3
Os02g0312700 Oryza sativa ssp. japonica HOM05D004920 ORTHO05D005998 8.9e-30 134.8 84 71.4
Psat4g001400 Pisum sativum HOM05D004920 ORTHO05D005998 3.4e-29 132.9 91 65.9
BcaB01g03906 Brassica carinata HOM05D004920 ORTHO05D005998 5.1e-25 119.0 183 40.4
Cre10.g437050 Chlamydomonas reinhardtii HOM05D004920 ORTHO05D005998 1.5e-24 117.5 204 33.3
CBR_g54210 Chara braunii HOM05D004920 ORTHO05D005998 2.5e-24 116.7 100 53.0
BcaNung00861 Brassica carinata HOM05D001872 ORTHO05D001859 1.2e-23 114.4 89 61.8
BolC7t45617H Brassica oleracea HOM05D001872 ORTHO05D001859 1.2e-23 114.4 89 61.8
BcaC04g19340 Brassica carinata HOM05D001872 ORTHO05D005998 1.6e-23 114.0 69 75.4
BolC1t01767H Brassica oleracea HOM05D001872 ORTHO05D005998 1.6e-23 114.0 92 62.0
BcaC05g29287 Brassica carinata HOM05D001911 ORTHO05D001951 2.1e-23 113.6 89 62.9
C01p18450 Brassica napus HOM05D001872 ORTHO05D001859 8.1e-23 111.7 88 62.5
Medtr1g097870 Medicago truncatula HOM05D004920 ORTHO05D005998 1.3e-20 104.4 102 54.9
QL04p069158 Quercus lobata HOM05D004920 ORTHO05D005998 2.2e-20 103.6 97 50.5
PRCOL_00005737 Prasinoderma coloniale HOM05D004920 ORTHO05D005998 1.3e-17 94.4 181 30.9
MCO09G652 Micromonas commoda HOM05D004920 ORTHO05D005998 1.8e-14 84.0 117 30.8
Duzib192G0917 Durio zibethinus HOM05D004920 ORTHO05D005998 9.0e-14 81.6 54 68.5
Cpa.g.sc80.20 Carica papaya HOM05D009365 ORTHO05D000952 2.0e-13 80.5 49 75.5
A02p38170 Brassica napus HOM05D011482 ORTHO05D001953 2.9e-12 76.6 44 77.3
BraA02t08794Z Brassica rapa HOM05D001897 ORTHO05D001953 2.9e-12 76.6 44 77.3
Medtr1g097880 Medicago truncatula HOM05D004920 ORTHO05D005998 2.7e-10 70.1 86 47.7
DCAR_032321 Daucus carota HOM05D004920 ORTHO05D005998 6.0e-10 68.9 51 58.8
BcaC01g03531 Brassica carinata HOM05D004920 ORTHO05D094784 1.3e-09 67.8 77 44.2
BolC5t34235H Brassica oleracea HOM05D001872 ORTHO05D001859 1.7e-09 67.4 56 57.1
Oeu062327.1 Olea europaea HOM05D004920 ORTHO05D005998 1.7e-09 67.4 42 73.8
SEGI_14350 Sequoiadendron giganteum HOM05D004920 ORTHO05D005998 5.1e-09 65.9 54 51.9
BcaC01g04260 Brassica carinata HOM05D004920 ORTHO05D010632 8.7e-09 65.1 55 56.4
Glyma.06G291500 Glycine max HOM05D006477 ORTHO05D008311 8.7e-09 65.1 57 57.9
BolC3t16607H Brassica oleracea HOM05D008686 ORTHO05D010632 3.3e-08 63.2 47 61.7
C03p43360 Brassica napus HOM05D004920 ORTHO05D010632 4.3e-08 62.8 35 77.1
Oeu019523.1 Olea europaea HOM05D004920 ORTHO05D005998 4.3e-08 62.8 41 65.9
C03p13910 Brassica napus HOM05D004920 ORTHO05D005998 7.3e-08 62.0 40 67.5


User provided reference genes

Program Settings