Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0019751 Sechium edule HOM05D007171 ORTHO05D008946 7.7e-129 463.8 225 100.0
MELO3C003081.2 Cucumis melo HOM05D007171 ORTHO05D008946 1.1e-79 300.4 227 65.2
CiPaw.10G139300 Carya illinoinensis HOM05D007171 ORTHO05D008946 2.6e-76 289.3 228 62.7
CsaV3_4G024490 Cucumis sativus L. HOM05D007171 ORTHO05D008946 3.7e-75 285.4 227 61.7
QL07p045896 Quercus lobata HOM05D007171 ORTHO05D008946 1.2e-70 270.4 220 60.9
Hma1.2p1_0350F.1_g132480 Hydrangea macrophylla HOM05D007171 ORTHO05D008946 5.2e-69 265.0 224 58.9
Actinidia11236 Actinidia chinensis HOM05D007171 ORTHO05D008946 9.9e-68 260.8 225 57.3
CSS0013206 Camellia sinensis var. sinensis HOM05D007171 ORTHO05D008946 1.4e-66 256.9 224 58.0
CSS0034218 Camellia sinensis var. sinensis HOM05D007171 ORTHO05D008946 1.4e-66 256.9 224 58.0
Dinv37232 Davidia involucrata HOM05D007171 ORTHO05D008946 1.4e-66 256.9 226 56.6
Ciclev10012666m.g Citrus clementina HOM05D007171 ORTHO05D008946 3.2e-66 255.8 228 56.6
Manes.09G071900 Manihot esculenta HOM05D007171 ORTHO05D008946 2.7e-65 252.7 228 56.1
Lj2C103T12 Lonicera japonica HOM05D007171 ORTHO05D008946 8.7e-64 247.7 228 53.5
Cfa017468 Carpinus fangiana HOM05D007171 ORTHO05D008946 7.3e-63 244.6 228 53.5
Eucgr.K03186 Eucalyptus grandis HOM05D007171 ORTHO05D008946 2.8e-62 242.7 220 58.2
GSVIVG01025575001 Vitis vinifera HOM05D007171 ORTHO05D008946 4.8e-62 241.9 209 56.5
MD04G1110400 Malus domestica HOM05D007171 ORTHO05D008946 1.4e-61 240.4 239 52.7
TWI74G0166 Tripterygium wilfordii HOM05D007171 ORTHO05D008946 6.9e-61 238.0 231 55.4
PGR004G1538 Punica granatum HOM05D007171 ORTHO05D008946 9.9e-60 234.2 223 52.5
Lalb_Chr21g0317461 Lupinus albus HOM05D007171 ORTHO05D008946 1.7e-59 233.4 216 53.2
Atru.chr8.2508 Acer truncatum HOM05D007171 ORTHO05D008946 2.2e-59 233.0 231 51.1
CANSAT80G0026 Cannabis sativa HOM05D007171 ORTHO05D008946 1.1e-58 230.7 232 53.0
Nn2g10565 Nelumbo nucifera HOM05D007171 ORTHO05D008946 3.2e-58 229.2 227 52.0
arahy.Tifrunner.gnm1.ann1.56UX32 Arachis hypogaea HOM05D007171 ORTHO05D008946 7.9e-57 224.6 215 52.1
Prupe.6G245500 Prunus persica HOM05D007171 ORTHO05D008946 1.0e-56 224.2 177 57.6
arahy.Tifrunner.gnm1.ann1.J666ZG Arachis hypogaea HOM05D007171 ORTHO05D008946 1.7e-56 223.4 215 52.1
Cc06_g03280 Coffea canephora HOM05D007171 ORTHO05D008946 3.0e-56 222.6 216 53.7
Medtr6g023885 Medicago truncatula HOM05D007171 ORTHO05D008946 3.0e-56 222.6 224 52.2
Migut.L01644 Erythranthe guttata HOM05D007171 ORTHO05D008946 6.6e-56 221.5 221 52.0
Peaxi162Scf00039g00419 Petunia axillaris HOM05D007171 ORTHO05D008946 3.3e-55 219.2 224 47.8
RcHm_v2.0_Chr3g0468061 Rosa chinensis HOM05D007171 ORTHO05D008946 4.3e-55 218.8 239 50.6
Gorai.001G248800 Gossypium raimondii HOM05D007171 ORTHO05D008946 5.6e-55 218.4 228 49.1
Gohir.A13G095390 Gossypium hirsutum HOM05D007171 ORTHO05D008946 7.4e-55 218.0 228 48.7
MSTRG.10286 Avicennia marina HOM05D007171 ORTHO05D008946 9.6e-55 217.6 210 52.9
Ca_04434_v3 Cicer arietinum L. HOM05D007171 ORTHO05D008946 1.3e-54 217.2 197 55.3
Gohir.D13G097200 Gossypium hirsutum HOM05D007171 ORTHO05D008946 1.3e-54 217.2 228 49.1
VMungo0464G1509 Vigna mungo HOM05D007171 ORTHO05D008946 2.8e-54 216.1 217 53.9
Thecc.05G049600 Theobroma cacao HOM05D007171 ORTHO05D008946 6.2e-54 214.9 229 48.9
EL10Ac7g17274 Beta vulgaris HOM05D007171 ORTHO05D008946 1.4e-53 213.8 228 48.7
Phvul.004G054300 Phaseolus vulgaris HOM05D007171 ORTHO05D008946 1.4e-53 213.8 198 55.6
Lj2g0011641 Lotus japonicus HOM05D007171 ORTHO05D008946 1.8e-53 213.4 208 52.4
HanXRQChr13g0399321 Helianthus annuus HOM05D007171 ORTHO05D008946 6.9e-53 211.5 192 55.2
TPR.G16189 Trifolium pratense HOM05D007171 ORTHO05D008946 6.9e-53 211.5 222 51.4
ATR0594G074 Amborella trichopoda HOM05D007171 ORTHO05D008946 2.6e-52 209.5 178 53.4
AUR62036841 Chenopodium quinoa HOM05D007171 ORTHO05D008946 3.4e-52 209.1 216 49.5
SHI12609 Sapria himalayana HOM05D007171 ORTHO05D008946 3.4e-52 209.1 164 58.5
AUR62042289 Chenopodium quinoa HOM05D007171 ORTHO05D008946 2.2e-51 206.5 216 49.5
Nitab4.5_0002774g0040 Nicotiana tabacum HOM05D007171 ORTHO05D008946 3.8e-51 205.7 191 52.9
FvH4_6g14830 Fragaria vesca HOM05D007171 ORTHO05D008946 4.9e-51 205.3 241 48.1
FAN09G2349 Fragaria x ananassa HOM05D007171 ORTHO05D008946 6.4e-51 204.9 241 48.1
FAN14G2678 Fragaria x ananassa HOM05D007171 ORTHO05D008946 2.4e-50 203.0 241 47.7
Nitab4.5_0000643g0130 Nicotiana tabacum HOM05D007171 ORTHO05D008946 4.2e-50 202.2 191 52.4
FAN05G0875 Fragaria x ananassa HOM05D007171 ORTHO05D008946 1.6e-49 200.3 209 51.7
Haze_20689 Corylus avellana HOM05D007171 ORTHO05D008946 2.1e-49 199.9 184 54.3
SalBow4G3339 Salvia bowleyana HOM05D007171 ORTHO05D008946 1.0e-48 197.6 195 52.3
FAN02G0958 Fragaria x ananassa HOM05D007171 ORTHO05D008946 2.3e-48 196.4 241 47.7
THA.LOC104826994 Tarenaya hassleriana HOM05D007171 ORTHO05D008946 3.0e-48 196.1 190 52.1
ECA233G5714 Erigeron canadensis HOM05D007171 ORTHO05D008946 3.3e-47 192.6 165 56.4
Glyma.05G078000 Glycine max HOM05D007171 ORTHO05D008946 4.8e-46 188.7 199 48.7
Sopen09g001790 Solanum pennellii HOM05D007171 ORTHO05D008946 4.8e-46 188.7 197 48.7
PGSC0003DMG400023935 Solanum tuberosum HOM05D007171 ORTHO05D008946 8.1e-46 188.0 226 44.2
MBI14_g46135_MAGBIO Magnolia biondii HOM05D007171 ORTHO05D008946 1.4e-45 187.2 317 37.9
Solyc09g005930.4 Solanum lycopersicum HOM05D007171 ORTHO05D008946 1.4e-45 187.2 197 47.7
SGA_v2.0_scaffold94G28650 Striga asiatica HOM05D007171 ORTHO05D008946 1.4e-45 187.2 226 44.7
CAN.G350.19 Capsicum annuum HOM05D007171 ORTHO05D008946 1.2e-44 184.1 181 51.4
Glyma.19G071700 Glycine max HOM05D007171 ORTHO05D008946 2.0e-44 183.3 199 47.2
Duzib128G0424 Durio zibethinus HOM05D007171 ORTHO05D008946 3.4e-44 182.6 229 45.0
Lsat_1_v5_gn_6_33220 Lactuca sativa HOM05D007171 ORTHO05D008946 5.8e-44 181.8 182 50.0
Potri.006G215800 Populus trichocarpa HOM05D007171 ORTHO05D008946 1.0e-43 181.0 259 40.9
unitig_0.g696 Utricularia gibba HOM05D007171 ORTHO05D008946 2.2e-43 179.9 210 44.8
Sc07g0006190 Simmondsia chinensis HOM05D007171 ORTHO05D008946 4.9e-43 178.7 145 57.9
Carub.0006s0150 Capsella rubella HOM05D007171 ORTHO05D008946 1.1e-42 177.6 207 47.3
Thhalv10014568m.g Eutrema salsugineum HOM05D007171 ORTHO05D008946 1.9e-42 176.8 232 41.8
PSO339G0903 Papaver somniferum HOM05D007171 ORTHO05D008946 1.2e-41 174.1 182 48.4
AT5G02740 Arabidopsis thaliana HOM05D007171 ORTHO05D008946 1.6e-41 173.7 191 47.1
PSO384G3756 Papaver somniferum HOM05D007171 ORTHO05D008946 2.1e-41 173.3 184 46.2
DCAR_017747 Daucus carota HOM05D007171 ORTHO05D008946 3.5e-41 172.6 228 42.1
BcaC06g32009 Brassica carinata HOM05D007171 ORTHO05D008946 1.0e-40 171.0 231 41.1
Aa31LG1G22150 Aethionema arabicum HOM05D007171 ORTHO05D008946 1.3e-40 170.6 195 48.2
AL6G11990 Arabidopsis lyrata HOM05D007171 ORTHO05D008946 6.7e-40 168.3 191 45.0
BolC9t60129H Brassica oleracea HOM05D007171 ORTHO05D008946 3.3e-39 166.0 211 41.2
Sabra06G0166400 Salix brachista HOM05D007171 ORTHO05D008946 3.3e-39 166.0 193 45.1
BraA10t45334Z Brassica rapa HOM05D007171 ORTHO05D008946 7.4e-39 164.9 210 41.4
A10p32970 Brassica napus HOM05D007171 ORTHO05D008946 9.6e-39 164.5 210 41.4
BcaNung03278 Brassica carinata HOM05D007171 ORTHO05D008946 1.3e-38 164.1 209 41.1
Zm00001eb397290 Zea mays HOM05D007171 ORTHO05D008946 2.8e-38 162.9 190 42.6
CDE04G2331 Ceratophyllum demersum HOM05D007171 ORTHO05D008946 3.7e-38 162.5 189 44.4
Os03g0282900 Oryza sativa ssp. japonica HOM05D007171 ORTHO05D008946 3.7e-38 162.5 209 42.6
C09p73940 Brassica napus HOM05D007171 ORTHO05D008946 8.2e-38 161.4 210 40.5
ClCG04G008670 Citrullus lanatus HOM05D007171 ORTHO05D008946 2.9e-35 152.9 190 48.4
SEGI_11390 Sequoiadendron giganteum HOM05D007171 ORTHO05D008946 6.5e-35 151.8 192 43.2
COL.COLO4_10310 Corchorus olitorius HOM05D007171 ORTHO05D008946 4.6e-33 145.6 227 38.8
Psat1g085840 Pisum sativum HOM05D007171 ORTHO05D008946 4.3e-31 139.0 118 57.6
vmacro20092 Vaccinium macrocarpon HOM05D007171 ORTHO05D008946 2.0e-28 130.2 152 46.1
Oeu035685.1 Olea europaea HOM05D007171 ORTHO05D008946 1.0e-24 117.9 82 63.4
TAR383G0190 Trochodendron aralioides HOM05D007171 ORTHO05D008946 9.7e-23 111.3 91 53.8
Aqoxy2G01927 Aquilegia oxysepala HOM05D007171 ORTHO05D008946 4.1e-21 105.9 139 45.3
Ah.08g212060 Amaranthus hybridus HOM05D007171 ORTHO05D008946 2.6e-20 103.2 87 50.6
HPP92_001690 Vanilla planifolia HOM05D007171 ORTHO05D008946 2.9e-19 99.8 196 31.6
CARHR210640 Cardamine hirsuta HOM05D007171 ORTHO05D008946 6.5e-19 98.6 122 43.4
SMO358G0627 Selaginella moellendorffii HOM05D007171 ORTHO05D008946 7.4e-15 85.1 185 29.2
Ah.08g212070 Amaranthus hybridus HOM05D007171 ORTHO05D008946 2.8e-14 83.2 97 46.4
MBI14_g16337_MAGBIO Magnolia biondii HOM05D007171 ORTHO05D008946 9.1e-13 78.2 61 57.4
Mapoly0061s0086 Marchantia polymorpha HOM05D007171 ORTHO05D008946 7.7e-12 75.1 174 27.6
HanXRQChr13g0399281 Helianthus annuus HOM05D007171 ORTHO05D008946 4.2e-10 69.3 74 48.6


User provided reference genes

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