Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0019738 Sechium edule HOM05D007109 ORTHO05D008813 2.1e-155 552.4 290 100.0
Sed0023192 Sechium edule HOM05D007109 ORTHO05D008813 2.9e-88 329.3 300 64.7
ClCG09G004450 Citrullus lanatus HOM05D007109 ORTHO05D008813 1.7e-80 303.5 307 60.6
CsaV3_7G030690 Cucumis sativus L. HOM05D007109 ORTHO05D008813 3.6e-78 295.8 303 57.8
MELO3C023587.2 Cucumis melo HOM05D007109 ORTHO05D008813 8.0e-70 268.1 303 53.5
QL04p010443 Quercus lobata HOM05D007109 ORTHO05D008813 5.4e-42 175.6 321 39.6
CiPaw.13G008200 Carya illinoinensis HOM05D007109 ORTHO05D008813 6.0e-41 172.2 306 39.2
Cfa010821 Carpinus fangiana HOM05D007109 ORTHO05D008813 3.0e-40 169.9 309 38.8
CiPaw.14G003600 Carya illinoinensis HOM05D007109 ORTHO05D008813 2.3e-37 160.2 306 37.9
Potri.009G055800 Populus trichocarpa HOM05D007109 ORTHO05D008813 2.3e-37 160.2 308 37.0
Duzib138G1369 Durio zibethinus HOM05D007109 ORTHO05D008813 3.1e-37 159.8 310 37.4
Thecc.01G404600 Theobroma cacao HOM05D007109 ORTHO05D008813 4.0e-37 159.5 313 38.0
Sabra09G0040900 Salix brachista HOM05D007109 ORTHO05D008813 6.8e-37 158.7 305 36.4
Dinv07428 Davidia involucrata HOM05D007109 ORTHO05D008813 8.9e-37 158.3 294 38.8
Ciclev10032181m.g Citrus clementina HOM05D007109 ORTHO05D008813 2.6e-36 156.8 307 34.9
CiPaw.15G135600 Carya illinoinensis HOM05D007109 ORTHO05D008813 3.4e-36 156.4 306 37.9
Phvul.005G036000 Phaseolus vulgaris HOM05D007109 ORTHO05D008813 5.8e-36 155.6 310 36.5
RcHm_v2.0_Chr1g0318291 Rosa chinensis HOM05D007109 ORTHO05D008813 3.7e-35 152.9 317 34.4
Prupe.2G023200 Prunus persica HOM05D007109 ORTHO05D008813 1.1e-34 151.4 313 34.2
Duzib133G0385 Durio zibethinus HOM05D007109 ORTHO05D008813 1.4e-34 151.0 279 36.6
Cpa.g.c33908 Carica papaya HOM05D007109 ORTHO05D008813 1.9e-34 150.6 281 38.8
Cpa.g.sc125.54 Carica papaya HOM05D007109 ORTHO05D008813 4.1e-34 149.4 281 38.8
Duzib268G1698 Durio zibethinus HOM05D007109 ORTHO05D008813 4.1e-34 149.4 293 38.6
Cc02_g28960 Coffea canephora HOM05D007109 ORTHO05D008813 1.6e-33 147.5 297 36.4
MD02G1301300 Malus domestica HOM05D007109 ORTHO05D008813 1.6e-33 147.5 317 34.4
Atru.chr11.2527 Acer truncatum HOM05D007109 ORTHO05D008813 2.1e-33 147.1 329 31.6
MD07G1022700 Malus domestica HOM05D007109 ORTHO05D008813 2.1e-33 147.1 314 34.1
TPR.G14571 Trifolium pratense HOM05D007109 ORTHO05D008813 1.3e-32 144.4 291 34.4
FvH4_7g01730 Fragaria vesca HOM05D007109 ORTHO05D008813 1.7e-32 144.1 316 33.9
FAN06G2427 Fragaria x ananassa HOM05D007109 ORTHO05D008813 1.7e-32 144.1 316 33.9
Manes.07G011500 Manihot esculenta HOM05D007109 ORTHO05D008813 3.0e-32 143.3 309 32.7
FAN03G1693 Fragaria x ananassa HOM05D007109 ORTHO05D008813 1.1e-31 141.4 317 33.4
MD07G1022600 Malus domestica HOM05D007109 ORTHO05D008813 4.3e-31 139.4 320 34.1
Manes.10G135500 Manihot esculenta HOM05D007109 ORTHO05D008813 5.6e-31 139.0 289 32.5
COL.COLO4_12331 Corchorus olitorius HOM05D007109 ORTHO05D008813 9.5e-31 138.3 304 35.5
Gorai.004G169100 Gossypium raimondii HOM05D007109 ORTHO05D008813 9.5e-31 138.3 278 34.9
Glyma.11G159021 Glycine max HOM05D007109 ORTHO05D008813 2.8e-30 136.7 314 33.8
Lsat_1_v5_gn_1_104720 Lactuca sativa HOM05D007109 ORTHO05D008813 6.2e-30 135.6 278 34.5
Gohir.D08G162700 Gossypium hirsutum HOM05D007109 ORTHO05D008813 1.4e-29 134.4 312 32.7
TAR633G0887 Trochodendron aralioides HOM05D007109 ORTHO05D008813 4.0e-29 132.9 286 37.4
Lalb_Chr25g0282601 Lupinus albus HOM05D007109 ORTHO05D008813 5.2e-29 132.5 303 33.7
Rhsim01G0124900 Rhododendron simsii HOM05D007109 ORTHO05D008813 5.2e-29 132.5 280 35.7
Rhsim07G0059100 Rhododendron simsii HOM05D007109 ORTHO05D008813 5.2e-29 132.5 296 34.1
CAN.G909.14 Capsicum annuum HOM05D007109 ORTHO05D008813 8.9e-29 131.7 313 31.3
PGSC0003DMG400041994 Solanum tuberosum HOM05D007109 ORTHO05D008813 1.2e-28 131.3 299 30.4
PGSC0003DMG402006771 Solanum tuberosum HOM05D007109 ORTHO05D008813 1.2e-28 131.3 299 30.4
vmacro13701 Vaccinium macrocarpon HOM05D007109 ORTHO05D008813 1.5e-28 131.0 288 34.7
Sed0006814 Sechium edule HOM05D007109 ORTHO05D008813 2.0e-28 130.6 297 38.0
Actinidia19426 Actinidia chinensis HOM05D007109 ORTHO05D008813 2.6e-28 130.2 288 33.0
Hma1.2p1_0269F.1_g107760 Hydrangea macrophylla HOM05D007109 ORTHO05D008813 2.6e-28 130.2 280 37.1
THA.LOC104827430 Tarenaya hassleriana HOM05D007109 ORTHO05D008813 3.4e-28 129.8 302 31.8
arahy.Tifrunner.gnm1.ann1.K9M8RY Arachis hypogaea HOM05D007109 ORTHO05D008813 9.9e-28 128.3 300 32.7
Glyma.04G142400 Glycine max HOM05D007109 ORTHO05D008813 9.9e-28 128.3 310 33.5
Sopen01g034880 Solanum pennellii HOM05D007109 ORTHO05D008813 1.3e-27 127.9 286 30.8
Nitab4.5_0001244g0020 Nicotiana tabacum HOM05D007109 ORTHO05D008813 1.7e-27 127.5 312 33.0
Medtr3g028060 Medicago truncatula HOM05D007109 ORTHO05D008813 2.2e-27 127.1 296 31.8
Peaxi162Scf01108g00310 Petunia axillaris HOM05D007109 ORTHO05D008813 2.9e-27 126.7 303 33.3
vmacro13699 Vaccinium macrocarpon HOM05D007109 ORTHO05D008813 6.4e-27 125.6 307 32.2
Nitab4.5_0004222g0010 Nicotiana tabacum HOM05D007109 ORTHO05D008813 1.4e-26 124.4 313 32.3
Eucgr.G03285 Eucalyptus grandis HOM05D007109 ORTHO05D008813 1.9e-26 124.0 282 33.0
Oeu014598.1 Olea europaea HOM05D007109 ORTHO05D008813 1.9e-26 124.0 284 32.7
CANSAT80G2748 Cannabis sativa HOM05D007109 ORTHO05D008813 2.4e-26 123.6 281 33.1
Lsat_1_v5_gn_1_104740 Lactuca sativa HOM05D007109 ORTHO05D008813 4.1e-26 122.9 286 29.7
Lj3g0020735 Lotus japonicus HOM05D007109 ORTHO05D008813 5.4e-26 122.5 282 32.3
Ca_26440_v3 Cicer arietinum L. HOM05D007109 ORTHO05D008813 7.1e-26 122.1 279 33.3
Nn7g36341 Nelumbo nucifera HOM05D007109 ORTHO05D008813 1.2e-25 121.3 312 32.7
Sed0007712 Sechium edule HOM05D007109 ORTHO05D008813 1.6e-25 120.9 289 34.9
Lj3g0012595 Lotus japonicus HOM05D007109 ORTHO05D008813 2.7e-25 120.2 339 27.4
Psat7g150920 Pisum sativum HOM05D007109 ORTHO05D008813 2.7e-25 120.2 297 30.6
HanXRQChr01g0007891 Helianthus annuus HOM05D007109 ORTHO05D008813 6.0e-25 119.0 284 30.6
ClCG10G012150 Citrullus lanatus HOM05D007109 ORTHO05D008813 3.0e-24 116.7 294 32.7
ECA248G3518 Erigeron canadensis HOM05D007109 ORTHO05D008813 3.0e-24 116.7 280 32.1
MELO3C024000.2 Cucumis melo HOM05D007109 ORTHO05D008813 5.1e-24 115.9 276 34.1
FAN10G2826 Fragaria x ananassa HOM05D007109 ORTHO05D008813 8.6e-24 115.2 279 31.9
Migut.B01259 Erythranthe guttata HOM05D007109 ORTHO05D008813 1.5e-23 114.4 279 29.7
MSTRG.17005 Avicennia marina HOM05D007109 ORTHO05D008813 1.9e-23 114.0 272 32.0
Lalb_Chr01g0000491 Lupinus albus HOM05D007109 ORTHO05D008813 3.3e-23 113.2 289 32.5
TPR.G8349 Trifolium pratense HOM05D007109 ORTHO05D008813 3.3e-23 113.2 289 31.1
MSTRG.20556 Avicennia marina HOM05D007109 ORTHO05D008813 4.3e-23 112.8 277 32.1
Medtr0003s0580 Medicago truncatula HOM05D007109 ORTHO05D008813 4.3e-23 112.8 280 30.4
TWI09G0588 Tripterygium wilfordii HOM05D007109 ORTHO05D008813 4.3e-23 112.8 311 32.5
MSTRG.5044 Avicennia marina HOM05D007109 ORTHO05D008813 7.3e-23 112.1 307 30.9
VMungo1080G0219 Vigna mungo HOM05D007109 ORTHO05D008813 7.3e-23 112.1 221 34.4
AUR62023101 Chenopodium quinoa HOM05D007109 ORTHO05D008813 3.6e-22 109.8 277 33.9
Ca_27474_v3 Cicer arietinum L. HOM05D007109 ORTHO05D008813 6.2e-22 109.0 296 30.4
Actinidia23253 Actinidia chinensis HOM05D007109 ORTHO05D008813 1.1e-21 108.2 232 34.1
AUR62009423 Chenopodium quinoa HOM05D007109 ORTHO05D008813 8.9e-21 105.1 269 32.0
TWI73G0029 Tripterygium wilfordii HOM05D007109 ORTHO05D008813 8.9e-21 105.1 281 32.4
Oeu049473.1 Olea europaea HOM05D007109 ORTHO05D008813 3.4e-20 103.2 280 30.4
SGA_v2.0_scaffold4G02475 Striga asiatica HOM05D007109 ORTHO05D008813 4.4e-20 102.8 286 31.5
Gohir.A08G141600 Gossypium hirsutum HOM05D007109 ORTHO05D008813 2.2e-19 100.5 267 31.8
SalBow5G4816 Salvia bowleyana HOM05D007109 ORTHO05D008813 2.2e-19 100.5 285 30.5
SalBow5G4465 Salvia bowleyana HOM05D007109 ORTHO05D008813 2.9e-19 100.1 281 30.2
Solyc01g087980.4 Solanum lycopersicum HOM05D007109 ORTHO05D008813 3.8e-19 99.8 230 29.1
Ah.10g038560 Amaranthus hybridus HOM05D007109 ORTHO05D008813 1.1e-18 98.2 302 29.5
Migut.B01258 Erythranthe guttata HOM05D007109 ORTHO05D008813 1.4e-18 97.8 314 29.0
Medtr3g034370 Medicago truncatula HOM05D007109 ORTHO05D008813 4.6e-17 92.8 299 27.4
SGA_v2.0_scaffold354G49753 Striga asiatica HOM05D007109 ORTHO05D008813 1.3e-16 91.3 294 29.6
Sc14g0004980 Simmondsia chinensis HOM05D007109 ORTHO05D008813 6.2e-14 82.4 334 25.1
Psat3g108760 Pisum sativum HOM05D002440 ORTHO05D002576 2.9e-11 73.6 297 25.6
Psat3g108800 Pisum sativum HOM05D002440 ORTHO05D002576 6.4e-11 72.4 297 24.9
Medtr3g034410 Medicago truncatula HOM05D007109 ORTHO05D008813 1.4e-10 71.2 283 26.5
Medtr7g078700 Medicago truncatula HOM05D002440 ORTHO05D002576 1.4e-10 71.2 304 24.0
Solyc04g050200.1 Solanum lycopersicum HOM05D007109 ORTHO05D008813 1.9e-10 70.9 120 35.8
Actinidia10051 Actinidia chinensis HOM05D002440 ORTHO05D002576 5.4e-10 69.3 297 23.2
CsaV3_3G031910 Cucumis sativus L. HOM05D007109 ORTHO05D008813 5.4e-10 69.3 123 39.0
ATR0782G062 Amborella trichopoda HOM05D002440 ORTHO05D008813 9.3e-10 68.6 101 37.6
TPR.G40170 Trifolium pratense HOM05D007109 ORTHO05D008813 1.6e-09 67.8 77 41.6
Cc00_g17880 Coffea canephora HOM05D002440 ORTHO05D002576 2.1e-09 67.4 303 24.4
Gorai.008G120000 Gossypium raimondii HOM05D002440 ORTHO05D002576 4.6e-09 66.2 121 32.2
Migut.N01457 Erythranthe guttata HOM05D002440 ORTHO05D002576 1.0e-08 65.1 305 26.6
CiPaw.01G065100 Carya illinoinensis HOM05D002440 ORTHO05D002576 1.8e-08 64.3 312 25.0
Eucgr.D02314 Eucalyptus grandis HOM05D002440 ORTHO05D002576 2.3e-08 63.9 306 22.5
MELO3C021186.2 Cucumis melo HOM05D002440 ORTHO05D002576 3.0e-08 63.5 139 30.9
arahy.Tifrunner.gnm1.ann1.PB6JBD Arachis hypogaea HOM05D002440 ORTHO05D002576 3.9e-08 63.2 300 24.3
Gohir.D12G110700 Gossypium hirsutum HOM05D002440 ORTHO05D002576 3.9e-08 63.2 121 31.4
QL04p054979 Quercus lobata HOM05D002440 ORTHO05D002576 5.1e-08 62.8 298 24.8
Sed0022066 Sechium edule HOM05D002440 ORTHO05D002576 5.1e-08 62.8 298 25.5
Hund16666 Selenicereus undatus HOM05D002440 ORTHO05D002576 5.1e-08 62.8 296 22.0
AUR62004397 Chenopodium quinoa HOM05D002440 ORTHO05D002576 1.1e-07 61.6 318 23.9
Lj1g0008716 Lotus japonicus HOM05D002440 ORTHO05D002576 1.1e-07 61.6 296 24.3
AL1G10850 Arabidopsis lyrata HOM05D002440 ORTHO05D002576 1.5e-07 61.2 120 30.0
AUR62022603 Chenopodium quinoa HOM05D002440 ORTHO05D002576 1.5e-07 61.2 316 23.1
Gohir.A12G107500 Gossypium hirsutum HOM05D002440 ORTHO05D002576 1.5e-07 61.2 120 30.8
Oeu054334.1 Olea europaea HOM05D002440 ORTHO05D002576 1.5e-07 61.2 296 23.3
Ciclev10020322m.g Citrus clementina HOM05D002440 ORTHO05D002576 1.9e-07 60.8 300 22.7
PGR031G3124 Punica granatum HOM05D002440 ORTHO05D002576 1.9e-07 60.8 303 23.4
Sed0005808 Sechium edule HOM05D002440 ORTHO05D002576 1.9e-07 60.8 152 29.6
CSS0042224 Camellia sinensis var. sinensis HOM05D002440 ORTHO05D002576 2.5e-07 60.5 286 21.7
AT1G01550 Arabidopsis thaliana HOM05D002440 ORTHO05D002576 3.3e-07 60.1 117 29.9
Glyma.18G237000 Glycine max HOM05D002440 ORTHO05D002576 4.3e-07 59.7 295 24.1
Rhsim07G0011700 Rhododendron simsii HOM05D002440 ORTHO05D002576 4.3e-07 59.7 297 22.9
TPR.G22299 Trifolium pratense HOM05D002440 ORTHO05D002576 4.3e-07 59.7 299 23.7
Ah.05g180270 Amaranthus hybridus HOM05D002440 ORTHO05D002576 5.6e-07 59.3 304 24.3
CsaV3_6G000840 Cucumis sativus L. HOM05D002440 ORTHO05D002576 5.6e-07 59.3 118 30.5
Actinidia20146 Actinidia chinensis HOM05D002440 ORTHO05D002576 7.4e-07 58.9 301 21.6
C04p72090 Brassica napus HOM05D002440 ORTHO05D002576 7.4e-07 58.9 301 26.2
COL.COLO4_12759 Corchorus olitorius HOM05D002440 ORTHO05D002576 7.4e-07 58.9 304 24.0
Haze_15547 Corylus avellana HOM05D002440 ORTHO05D002576 7.4e-07 58.9 318 23.3
THA.LOC104801398 Tarenaya hassleriana HOM05D002440 ORTHO05D002576 7.4e-07 58.9 299 24.4
Gohir.A12G100450 Gossypium hirsutum HOM05D007109 ORTHO05D008813 9.6e-07 58.5 110 35.5
Sabra02G0147900 Salix brachista HOM05D002440 ORTHO05D002576 9.6e-07 58.5 297 23.6
Sabra02G0148300 Salix brachista HOM05D002440 ORTHO05D002576 9.6e-07 58.5 297 23.6
arahy.Tifrunner.gnm1.ann1.1NF82D Arachis hypogaea HOM05D002440 ORTHO05D002576 1.3e-06 58.2 297 24.2
ClCG06G003470 Citrullus lanatus HOM05D002440 ORTHO05D002576 1.3e-06 58.2 150 28.0
Medtr3g034540 Medicago truncatula HOM05D007109 ORTHO05D008813 1.3e-06 58.2 124 32.3
Aa31LG1G10730 Aethionema arabicum HOM05D002440 ORTHO05D002576 1.6e-06 57.8 296 23.6
arahy.Tifrunner.gnm1.ann1.ZTTB8N Arachis hypogaea HOM05D002440 ORTHO05D002576 1.6e-06 57.8 297 24.2
Carub.0001s0069 Capsella rubella HOM05D002440 ORTHO05D002576 1.6e-06 57.8 123 30.1
MSTRG.4845 Avicennia marina HOM05D002440 ORTHO05D002576 2.1e-06 57.4 297 21.9
BcaB03g13592 Brassica carinata HOM05D002440 ORTHO05D002576 2.1e-06 57.4 108 32.4
A04p34270 Brassica napus HOM05D002440 ORTHO05D002576 2.1e-06 57.4 298 25.2
A10p00440 Brassica napus HOM05D002440 ORTHO05D002576 2.1e-06 57.4 108 32.4
C05p00480 Brassica napus HOM05D002440 ORTHO05D002576 2.1e-06 57.4 108 32.4
BolC5t28837H Brassica oleracea HOM05D002440 ORTHO05D002576 2.1e-06 57.4 108 32.4
BraA10t42324Z Brassica rapa HOM05D002440 ORTHO05D002576 2.1e-06 57.4 108 32.4
Sed0020411 Sechium edule HOM05D002440 ORTHO05D002576 2.1e-06 57.4 150 28.0
BraA04t18888Z Brassica rapa HOM05D002440 ORTHO05D002576 2.8e-06 57.0 297 25.3
Ca_00821_v3 Cicer arietinum L. HOM05D002440 ORTHO05D002576 2.8e-06 57.0 295 23.4
Duzib133G1249 Durio zibethinus HOM05D002440 ORTHO05D002576 2.8e-06 57.0 300 23.3
CSS0035560 Camellia sinensis var. sinensis HOM05D002440 ORTHO05D002576 3.7e-06 56.6 297 22.6
Duzib268G0409 Durio zibethinus HOM05D002440 ORTHO05D002576 3.7e-06 56.6 114 31.6
Sed0022646 Sechium edule HOM05D002440 ORTHO05D002576 3.7e-06 56.6 296 23.3
SGA_v2.0_scaffold4G02292 Striga asiatica HOM05D000137 ORTHO05D002576 3.7e-06 56.6 309 22.0
TWI59G0296 Tripterygium wilfordii HOM05D002440 ORTHO05D002576 3.7e-06 56.6 306 23.2
unitig_26.g9742 Utricularia gibba HOM05D002440 ORTHO05D002576 3.7e-06 56.6 114 29.8
Os10g0513300 Oryza sativa ssp. japonica HOM05D002440 ORTHO05D002576 4.8e-06 56.2 98 34.7
THA.LOC104802045 Tarenaya hassleriana HOM05D002440 ORTHO05D002576 4.8e-06 56.2 300 22.7
Duzib138G1866 Durio zibethinus HOM05D002440 ORTHO05D002576 6.2e-06 55.8 114 29.8
Thhalv10008079m.g Eutrema salsugineum HOM05D002440 ORTHO05D002576 6.2e-06 55.8 299 23.7
Glyma.09G255800 Glycine max HOM05D002440 ORTHO05D002576 6.2e-06 55.8 308 23.1
SEGI_08203 Sequoiadendron giganteum HOM05D002440 ORTHO05D002576 6.2e-06 55.8 337 23.1
Manes.05G031100 Manihot esculenta HOM05D002440 ORTHO05D002576 8.1e-06 55.5 306 21.9


User provided reference genes

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