Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0019717 Sechium edule HOM05D003890 ORTHO05D004514 5.1e-125 451.1 223 100.0
ClCG03G013240 Citrullus lanatus HOM05D003890 ORTHO05D004514 9.1e-106 387.1 223 86.1
CsaV3_1G042820 Cucumis sativus L. HOM05D003890 ORTHO05D004514 7.9e-102 374.0 224 83.0
QL01p004686 Quercus lobata HOM05D003890 ORTHO05D004514 8.8e-93 344.0 226 73.9
Manes.14G002800 Manihot esculenta HOM05D003890 ORTHO05D004514 2.0e-89 332.8 229 73.4
CiPaw.14G119100 Carya illinoinensis HOM05D003890 ORTHO05D004514 3.5e-89 332.0 226 71.7
CiPaw.13G160900 Carya illinoinensis HOM05D003890 ORTHO05D004514 2.9e-88 328.9 227 71.4
Sabra16G0157800 Salix brachista HOM05D003890 ORTHO05D004514 3.8e-88 328.6 226 69.9
Potri.001G258100 Populus trichocarpa HOM05D003890 ORTHO05D004514 1.1e-87 327.0 226 69.5
Haze_23135 Corylus avellana HOM05D000807 ORTHO05D000662 1.5e-87 326.6 226 70.4
Cfa009770 Carpinus fangiana HOM05D003890 ORTHO05D004514 7.2e-87 324.3 226 69.9
Manes.06G164200 Manihot esculenta HOM05D003890 ORTHO05D004514 1.2e-86 323.6 227 70.5
Thecc.09G233900 Theobroma cacao HOM05D003890 ORTHO05D004514 1.2e-86 323.6 227 69.6
Dinv36258 Davidia involucrata HOM05D003890 ORTHO05D004514 2.1e-86 322.8 225 71.1
FAN21G3604 Fragaria x ananassa HOM05D003890 ORTHO05D004514 2.1e-86 322.8 224 70.1
Prupe.4G249500 Prunus persica HOM05D003890 ORTHO05D004514 3.6e-86 322.0 226 70.8
TAR636G2753 Trochodendron aralioides HOM05D003890 ORTHO05D004514 4.7e-86 321.6 226 69.0
COL.COLO4_07583 Corchorus olitorius HOM05D003890 ORTHO05D004514 6.1e-86 321.2 229 68.6
FAN25G3809 Fragaria x ananassa HOM05D003890 ORTHO05D004514 1.0e-85 320.5 224 69.6
Glyma.08G335500 Glycine max HOM05D003890 ORTHO05D004514 1.4e-85 320.1 230 70.9
Potri.009G053300 Populus trichocarpa HOM05D003890 ORTHO05D004514 2.3e-85 319.3 226 70.4
FvH4_3g28850 Fragaria vesca HOM05D003890 ORTHO05D004514 3.0e-85 318.9 224 69.2
FAN11G0759 Fragaria x ananassa HOM05D003890 ORTHO05D004514 4.0e-85 318.5 224 69.2
FAN16G3317 Fragaria x ananassa HOM05D003890 ORTHO05D004514 5.2e-85 318.2 224 69.2
Glyma.18G070500 Glycine max HOM05D003890 ORTHO05D004514 6.8e-85 317.8 226 71.2
Hma1.2p1_0027F.1_g017050 Hydrangea macrophylla HOM05D003890 ORTHO05D004514 1.2e-84 317.0 223 70.4
RcHm_v2.0_Chr5g0052051 Rosa chinensis HOM05D003890 ORTHO05D004514 1.5e-84 316.6 224 70.1
Actinidia06907 Actinidia chinensis HOM05D003890 ORTHO05D004514 2.0e-84 316.2 223 70.9
Phvul.006G062600 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 3.4e-84 315.5 226 69.0
Duzib170G0856 Durio zibethinus HOM05D003890 ORTHO05D004514 5.7e-84 314.7 226 67.7
MD03G1175000 Malus domestica HOM05D003890 ORTHO05D004514 1.7e-83 313.2 226 69.0
Duzib150G1364 Durio zibethinus HOM05D003890 ORTHO05D004514 2.2e-83 312.8 229 68.1
Atru.chr3.2715 Acer truncatum HOM05D003890 ORTHO05D004514 6.3e-83 311.2 224 69.2
TAR633G1481 Trochodendron aralioides HOM05D003890 ORTHO05D004514 8.3e-83 310.8 226 67.3
MD11G1193100 Malus domestica HOM05D003890 ORTHO05D004514 5.4e-82 308.1 227 69.6
VMungo0540G2384 Vigna mungo HOM05D003890 ORTHO05D004514 7.0e-82 307.8 226 68.1
Actinidia16334 Actinidia chinensis HOM05D003890 ORTHO05D004514 9.1e-82 307.4 223 69.5
Ca_14881_v3 Cicer arietinum L. HOM05D003890 ORTHO05D004514 2.0e-81 306.2 226 67.3
Ciclev10016574m.g Citrus clementina HOM05D003890 ORTHO05D004514 5.9e-81 304.7 230 66.5
Cpa.g.sc84.53 Carica papaya HOM05D003890 ORTHO05D004514 2.2e-80 302.8 225 68.0
Psat5g163000 Pisum sativum HOM05D003890 ORTHO05D004514 2.2e-80 302.8 226 66.4
Nn2g15369 Nelumbo nucifera HOM05D003890 ORTHO05D004514 5.0e-80 301.6 222 66.7
Sabra09G0038800 Salix brachista HOM05D003890 ORTHO05D004514 5.0e-80 301.6 227 66.5
Lalb_Chr18g0050551 Lupinus albus HOM05D003890 ORTHO05D004514 8.5e-80 300.8 216 67.1
Medtr3g061630 Medicago truncatula HOM05D003890 ORTHO05D004514 2.5e-79 299.3 227 64.3
MELO3C015193.2 Cucumis melo HOM05D003890 ORTHO05D004514 3.2e-79 298.9 183 82.5
Gohir.A05G069400 Gossypium hirsutum HOM05D003890 ORTHO05D004514 2.7e-78 295.8 228 64.9
Gohir.D05G072300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 3.6e-78 295.4 228 65.8
Gorai.009G073300 Gossypium raimondii HOM05D003890 ORTHO05D004514 3.6e-78 295.4 228 65.8
CANSAT56G1539 Cannabis sativa HOM05D003890 ORTHO05D004514 8.0e-78 294.3 233 64.8
Lj6g0021955 Lotus japonicus HOM05D003890 ORTHO05D004514 8.0e-78 294.3 227 63.0
Aqoxy2G00137 Aquilegia oxysepala HOM05D003890 ORTHO05D004514 1.4e-77 293.5 227 63.4
TPR.G30124 Trifolium pratense HOM05D003890 ORTHO05D004514 1.8e-77 293.1 226 64.2
Hund07506 Selenicereus undatus HOM05D003890 ORTHO05D004514 5.2e-77 291.6 223 65.0
EL10Ac4g10247 Beta vulgaris HOM05D003890 ORTHO05D004514 1.2e-76 290.4 226 62.4
PGR102G1724 Punica granatum HOM05D003890 ORTHO05D004514 3.4e-76 288.9 236 62.3
AUR62019304 Chenopodium quinoa HOM05D003890 ORTHO05D004514 7.5e-76 287.7 226 61.9
DCAR_002072 Daucus carota HOM05D003890 ORTHO05D004514 9.8e-76 287.3 225 64.0
Rhsim01G0191800 Rhododendron simsii HOM05D003890 ORTHO05D004514 1.7e-75 286.6 224 66.5
SGA_v2.0_scaffold8G04590 Striga asiatica HOM05D003890 ORTHO05D004514 5.4e-74 281.6 223 62.8
arahy.Tifrunner.gnm1.ann1.5L0PCQ Arachis hypogaea HOM05D003890 ORTHO05D004514 1.6e-73 280.0 226 63.7
CsaV3_4G024270 Cucumis sativus L. HOM05D003890 ORTHO05D004514 2.0e-73 279.6 215 65.6
Dinv09354 Davidia involucrata HOM05D003890 ORTHO05D004514 2.0e-73 279.6 221 60.6
MBI04_g36752_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 2.0e-73 279.6 232 61.6
PSO384G2797 Papaver somniferum HOM05D003890 ORTHO05D004514 2.7e-73 279.3 229 62.0
TWI60G0796 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 4.5e-73 278.5 224 61.6
ClCG02G023230 Citrullus lanatus HOM05D003890 ORTHO05D004514 1.0e-72 277.3 215 64.2
TWI32G0323 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 1.0e-72 277.3 225 62.7
MELO3C014593.2 Cucumis melo HOM05D003890 ORTHO05D004514 2.9e-72 275.8 215 64.2
MBI02_g05665_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 1.5e-71 273.5 226 61.1
Hund22030 Selenicereus undatus HOM05D003890 ORTHO05D004514 3.3e-71 272.3 226 63.3
THA.LOC104807531 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 4.3e-71 271.9 229 61.1
THA.LOC104811066 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 5.6e-71 271.6 228 62.7
Lj1A330T24 Lonicera japonica HOM05D003890 ORTHO05D004514 1.2e-70 270.4 228 63.2
Oeu001480.1 Olea europaea HOM05D003890 ORTHO05D004514 1.6e-70 270.0 223 59.6
MSTRG.21378 Avicennia marina HOM05D003890 ORTHO05D004514 4.7e-70 268.5 223 58.7
Ah.04g161930 Amaranthus hybridus HOM05D003890 ORTHO05D004514 6.1e-70 268.1 226 59.7
Oeu016684.1 Olea europaea HOM05D003890 ORTHO05D004514 1.8e-69 266.5 220 60.9
Eucgr.J00766 Eucalyptus grandis HOM05D003890 ORTHO05D004514 3.0e-69 265.8 227 61.2
Gohir.D09G111000 Gossypium hirsutum HOM05D003890 ORTHO05D004514 3.0e-69 265.8 227 62.6
ATR0332G008 Amborella trichopoda HOM05D003890 ORTHO05D004514 4.0e-69 265.4 228 60.5
Gorai.006G128600 Gossypium raimondii HOM05D003890 ORTHO05D004514 4.0e-69 265.4 227 62.6
Nitab4.5_0001587g0060 Nicotiana tabacum HOM05D003890 ORTHO05D004514 1.2e-68 263.8 227 60.8
Lsat_1_v5_gn_1_66000 Lactuca sativa HOM05D003890 ORTHO05D004514 1.5e-68 263.5 223 59.6
GSVIVG01025257001 Vitis vinifera HOM05D003890 ORTHO05D004514 1.5e-68 263.5 168 75.0
Lalb_Chr04g0247401 Lupinus albus HOM05D003890 ORTHO05D004514 2.6e-68 262.7 223 61.4
Lalb_Chr04g0247641 Lupinus albus HOM05D003890 ORTHO05D004514 2.6e-68 262.7 223 61.4
Gohir.A09G114300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 3.4e-68 262.3 227 61.7
Nitab4.5_0002741g0130 Nicotiana tabacum HOM05D003890 ORTHO05D004514 7.5e-68 261.2 227 59.9
Sopen11g025500 Solanum pennellii HOM05D003890 ORTHO05D004514 9.8e-68 260.8 221 60.6
Solyc11g065740.2 Solanum lycopersicum HOM05D003890 ORTHO05D004514 1.3e-67 260.4 221 60.6
PGR119G1229 Punica granatum HOM05D003890 ORTHO05D004514 1.7e-67 260.0 230 60.0
CAN.G599.2 Capsicum annuum HOM05D003890 ORTHO05D004514 3.7e-67 258.8 218 61.0
ECA240G2592 Erigeron canadensis HOM05D003890 ORTHO05D004514 4.9e-67 258.5 226 58.4
PGSC0003DMG400007341 Solanum tuberosum HOM05D003890 ORTHO05D004514 8.3e-67 257.7 221 60.2
Phvul.008G283400 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 1.1e-66 257.3 223 60.5
Cc10_g03220 Coffea canephora HOM05D003890 ORTHO05D004514 1.4e-66 256.9 226 58.8
MSTRG.18426 Avicennia marina HOM05D003890 ORTHO05D004514 2.4e-66 256.1 216 61.6
Cc02_g28010 Coffea canephora HOM05D003890 ORTHO05D004514 2.4e-66 256.1 220 56.8
Glyma.14G009900 Glycine max HOM05D003890 ORTHO05D004514 2.0e-65 253.1 223 61.4
ECA233G4357 Erigeron canadensis HOM05D003890 ORTHO05D004514 3.5e-65 252.3 213 59.6
Sed0005000 Sechium edule HOM05D003890 ORTHO05D004514 4.6e-65 251.9 215 60.5
MBI04_g40116_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 1.0e-64 250.8 243 55.6
HanXRQChr02g0056201 Helianthus annuus HOM05D003890 ORTHO05D004514 1.3e-64 250.4 221 56.6
Lsat_1_v5_gn_6_47921 Lactuca sativa HOM05D003890 ORTHO05D004514 3.0e-64 249.2 220 56.4
vmacro12718 Vaccinium macrocarpon HOM05D003890 ORTHO05D004514 3.9e-64 248.8 257 55.6
arahy.Tifrunner.gnm1.ann1.HEYT23 Arachis hypogaea HOM05D003890 ORTHO05D004514 6.6e-64 248.1 226 59.3
BcaB08g36566 Brassica carinata HOM05D003890 ORTHO05D004514 8.6e-64 247.7 223 57.8
C03p11250 Brassica napus HOM05D003890 ORTHO05D004514 2.5e-63 246.1 223 55.6
BcaB01g04825 Brassica carinata HOM05D003890 ORTHO05D004514 3.3e-63 245.7 223 55.6
A03p09680 Brassica napus HOM05D003890 ORTHO05D004514 3.3e-63 245.7 223 55.2
BolC3t13596H Brassica oleracea HOM05D003890 ORTHO05D004514 3.3e-63 245.7 223 55.6
Nn7g36206 Nelumbo nucifera HOM05D003890 ORTHO05D004514 4.3e-63 245.4 227 56.4
Aa31LG4G8640 Aethionema arabicum HOM05D003890 ORTHO05D004514 7.3e-63 244.6 221 55.7
AT5G19855 Arabidopsis thaliana HOM05D003890 ORTHO05D004514 1.0e-61 240.7 218 56.4
CDE02G1666 Ceratophyllum demersum HOM05D003890 ORTHO05D004514 1.0e-61 240.7 233 53.6
VMungo0647G1030 Vigna mungo HOM05D003890 ORTHO05D004514 1.4e-61 240.4 220 58.2
BcaC03g13717 Brassica carinata HOM05D003890 ORTHO05D004514 3.1e-61 239.2 223 56.1
BNapus_Darmor_BZH_scaffold_38p02060 Brassica napus HOM05D003890 ORTHO05D004514 5.2e-61 238.4 223 56.1
Peaxi162Scf00004g02340 Petunia axillaris HOM05D003890 ORTHO05D004514 1.2e-60 237.3 224 58.5
BraA03t10284Z Brassica rapa HOM05D003890 ORTHO05D004514 1.5e-60 236.9 237 51.9
GSVIVG01032095001 Vitis vinifera HOM05D003890 ORTHO05D004514 2.6e-60 236.1 150 72.0
BcaB01g04844 Brassica carinata HOM05D003890 ORTHO05D004514 5.8e-60 235.0 223 55.6
Carub.0006s1821 Capsella rubella HOM05D003890 ORTHO05D004514 5.8e-60 235.0 216 55.6
AL6G31380 Arabidopsis lyrata HOM05D003890 ORTHO05D004514 7.5e-60 234.6 216 56.5
Eucgr.B03687 Eucalyptus grandis HOM05D003890 ORTHO05D004514 7.5e-60 234.6 189 64.0
Migut.N02317 Erythranthe guttata HOM05D003890 ORTHO05D004514 1.3e-59 233.8 225 56.0
BolC2t06986H Brassica oleracea HOM05D003890 ORTHO05D004514 1.1e-58 230.7 234 53.4
Migut.D00602 Erythranthe guttata HOM05D003890 ORTHO05D004514 6.0e-57 224.9 227 52.4
BraA02t05537Z Brassica rapa HOM05D003890 ORTHO05D004514 7.8e-57 224.6 234 51.7
A02p05850 Brassica napus HOM05D003890 ORTHO05D004514 1.3e-56 223.8 245 50.6
MSTRG.17029 Avicennia marina HOM05D003890 ORTHO05D004514 5.0e-56 221.9 202 55.0
MSTRG.28066 Avicennia marina HOM05D003890 ORTHO05D004514 1.1e-55 220.7 220 52.7
SGA_v2.0_scaffold3G01504 Striga asiatica HOM05D003890 ORTHO05D004514 1.1e-55 220.7 214 51.4
CARHR193020 Cardamine hirsuta HOM05D003890 ORTHO05D004514 3.3e-55 219.2 199 54.8
AUR62000123 Chenopodium quinoa HOM05D003890 ORTHO05D004514 3.3e-55 219.2 224 51.3
Peaxi162Scf00953g00113 Petunia axillaris HOM05D003890 ORTHO05D004514 1.1e-53 214.2 218 51.4
arahy.Tifrunner.gnm1.ann1.13C5F2 Arachis hypogaea HOM05D003890 ORTHO05D004514 1.4e-53 213.8 227 53.3
Solyc01g087190.4 Solanum lycopersicum HOM05D003890 ORTHO05D004514 3.1e-53 212.6 219 49.8
Zm00001eb212460 Zea mays HOM05D003890 ORTHO05D004514 3.1e-53 212.6 146 67.8
Thhalv10015929m.g Eutrema salsugineum HOM05D003890 ORTHO05D004514 5.2e-53 211.8 223 50.7
Sopen01g034250 Solanum pennellii HOM05D003890 ORTHO05D004514 5.2e-53 211.8 219 49.3
DCAR_003214 Daucus carota HOM05D003890 ORTHO05D004514 1.2e-52 210.7 186 57.0
unitig_22.g6202 Utricularia gibba HOM05D003890 ORTHO05D004514 1.5e-52 210.3 207 53.6
Os03g0807900 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 3.4e-52 209.1 141 68.1
Nitab4.5_0004290g0020 Nicotiana tabacum HOM05D003890 ORTHO05D004514 4.4e-52 208.8 219 49.8
PGSC0003DMG400006801 Solanum tuberosum HOM05D003890 ORTHO05D004514 5.8e-52 208.4 225 48.9
Os07g0569600 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 2.2e-51 206.5 128 71.1
unitig_8.g2995 Utricularia gibba HOM05D003890 ORTHO05D004514 2.2e-51 206.5 239 48.1
SalBow6G5214 Salvia bowleyana HOM05D003890 ORTHO05D004514 3.7e-51 205.7 201 54.2
CAN.G1560.2 Capsicum annuum HOM05D003890 ORTHO05D004514 6.4e-51 204.9 220 49.5
Nitab4.5_0001186g0010 Nicotiana tabacum HOM05D003890 ORTHO05D004514 2.4e-50 203.0 222 49.5
SalBow6G3376 Salvia bowleyana HOM05D003890 ORTHO05D004514 2.4e-50 203.0 203 53.2
arahy.Tifrunner.gnm1.ann1.V44IJD Arachis hypogaea HOM05D003890 ORTHO05D004514 7.1e-50 201.4 227 51.1
Zm00001eb324740 Zea mays HOM05D003890 ORTHO05D004514 2.1e-49 199.9 150 62.7
HanXRQChr16g0524491 Helianthus annuus HOM05D003890 ORTHO05D004514 6.0e-49 198.4 162 58.6
Pp3c9_10480 Physcomitrium patens HOM05D003890 ORTHO05D004514 2.8e-46 189.5 223 46.6
HPP92_024873 Vanilla planifolia HOM05D003890 ORTHO05D004514 2.8e-46 189.5 159 57.2
Ah.06g194180 Amaranthus hybridus HOM05D003890 ORTHO05D004514 4.7e-46 188.7 277 42.2
HanXRQChr01g0018191 Helianthus annuus HOM05D003890 ORTHO05D004514 6.2e-46 188.3 226 46.9
Mapoly0069s0007 Marchantia polymorpha HOM05D003890 ORTHO05D004514 7.6e-44 181.4 201 48.8
Pp3c12_1270 Physcomitrium patens HOM05D003890 ORTHO05D004514 1.7e-43 180.3 129 63.6
SMO275G0040 Selaginella moellendorffii HOM05D003890 ORTHO05D004514 1.2e-41 174.1 123 65.0
AagrBONN_evm.TU.Sc2ySwM_228.2147 Anthoceros agrestis HOM05D003890 ORTHO05D004514 6.6e-40 168.3 227 42.7
CBR_g21098 Chara braunii HOM05D003890 ORTHO05D004514 1.1e-39 167.5 197 44.7
Mapoly0002s0228 Marchantia polymorpha HOM05D003890 ORTHO05D004514 3.3e-39 166.0 144 53.5
Sc09g0000720 Simmondsia chinensis HOM05D003890 ORTHO05D004514 9.6e-39 164.5 161 55.3
Lsat_1_v5_gn_4_31621 Lactuca sativa HOM05D003890 ORTHO05D004514 1.2e-38 164.1 135 58.5
BcaC04g19383 Brassica carinata HOM05D003890 ORTHO05D004514 1.5e-36 157.1 212 44.8
Sp6g24540 Schrenkiella parvula HOM05D003890 ORTHO05D004514 1.7e-35 153.7 223 43.0
SEGI_02367 Sequoiadendron giganteum HOM05D003890 ORTHO05D004514 2.9e-35 152.9 106 61.3
C09p56300 Brassica napus HOM05D003890 ORTHO05D004514 2.4e-34 149.8 237 40.9
BolC9t58499H Brassica oleracea HOM05D003890 ORTHO05D004514 4.2e-34 149.1 228 42.1
CSS0039551 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 5.1e-32 142.1 82 79.3
arahy.Tifrunner.gnm1.ann1.11Y6U0 Arachis hypogaea HOM05D003890 ORTHO05D004514 1.4e-29 134.0 88 71.6
CSS0045152 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 2.7e-25 119.8 114 55.3
A10p19900 Brassica napus HOM05D003890 ORTHO05D004514 3.1e-21 106.3 65 73.8
BraA10t44065Z Brassica rapa HOM05D003890 ORTHO05D004514 3.5e-17 92.8 54 74.1
BcaC04g19382 Brassica carinata HOM05D000916 ORTHO05D008653 1.5e-15 87.4 52 75.0
SGA_v2.0_scaffold1G00707 Striga asiatica HOM05D003890 ORTHO05D004514 2.1e-06 57.0 134 35.8


User provided reference genes

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