Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0019714 Sechium edule HOM05D006660 ORTHO05D008184 0.0e+00 1174.1 591 100.0
ClCG02G009540 Citrullus lanatus HOM05D006660 ORTHO05D008184 1.5e-296 1022.3 612 84.0
CsaV3_2G034260 Cucumis sativus L. HOM05D006660 ORTHO05D008184 9.9e-293 1009.6 580 86.6
MELO3C019360.2 Cucumis melo HOM05D006660 ORTHO05D008184 1.3e-292 1009.2 579 86.5
Thecc.01G186300 Theobroma cacao HOM05D006660 ORTHO05D008184 6.1e-258 894.0 585 78.3
FAN14G2696 Fragaria x ananassa HOM05D006660 ORTHO05D008184 1.3e-255 886.3 577 77.6
FAN14G4026 Fragaria x ananassa HOM05D006660 ORTHO05D008184 1.3e-255 886.3 577 77.6
FvH4_6g41550 Fragaria vesca HOM05D006660 ORTHO05D008184 2.2e-255 885.6 577 77.5
PGR142G4370 Punica granatum HOM05D006660 ORTHO05D008184 2.4e-254 882.1 582 75.6
RcHm_v2.0_Chr2g0157231 Rosa chinensis HOM05D006660 ORTHO05D008184 1.2e-253 879.8 577 77.1
FAN02G1797 Fragaria x ananassa HOM05D006660 ORTHO05D008184 4.5e-253 877.9 577 77.5
Rhsim04G0045800 Rhododendron simsii HOM05D006660 ORTHO05D008184 1.7e-252 875.9 579 76.3
Manes.12G060700 Manihot esculenta HOM05D006660 ORTHO05D008184 2.2e-252 875.5 580 76.7
Prupe.3G205300 Prunus persica HOM05D006660 ORTHO05D008184 2.5e-251 872.1 583 75.0
CSS0034515 Camellia sinensis var. sinensis HOM05D006660 ORTHO05D008184 3.2e-251 871.7 586 76.8
Gorai.001G097700 Gossypium raimondii HOM05D006660 ORTHO05D008184 9.4e-251 870.2 582 76.1
Eucgr.K00713 Eucalyptus grandis HOM05D006660 ORTHO05D008184 4.6e-250 867.8 580 73.8
Potri.014G163200 Populus trichocarpa HOM05D006660 ORTHO05D008184 6.1e-250 867.5 575 76.2
FAN05G5067 Fragaria x ananassa HOM05D006660 ORTHO05D008184 1.0e-249 866.7 577 76.9
TWI36G0095 Tripterygium wilfordii HOM05D006660 ORTHO05D008184 1.0e-249 866.7 576 75.7
Actinidia10783 Actinidia chinensis HOM05D006660 ORTHO05D008184 3.9e-249 864.8 577 76.6
Sabra14G0124600 Salix brachista HOM05D006660 ORTHO05D008184 6.7e-249 864.0 576 76.6
Duzib133G0254 Durio zibethinus HOM05D006660 ORTHO05D008184 2.2e-247 859.0 584 75.3
Nn1g07385 Nelumbo nucifera HOM05D006660 ORTHO05D008184 1.4e-246 856.3 574 75.3
Atru.chr6.3323 Acer truncatum HOM05D006660 ORTHO05D008184 1.8e-246 855.9 571 76.2
Nitab4.5_0000130g0170 Nicotiana tabacum HOM05D006660 ORTHO05D008184 2.2e-244 849.0 562 76.0
Ciclev10014722m.g Citrus clementina HOM05D006660 ORTHO05D008184 4.2e-243 844.7 576 73.6
Nitab4.5_0008746g0020 Nicotiana tabacum HOM05D006660 ORTHO05D008184 7.2e-243 844.0 569 75.6
CAN.G784.8 Capsicum annuum HOM05D006660 ORTHO05D008184 3.6e-242 841.6 562 75.8
Solyc07g049590.3 Solanum lycopersicum HOM05D006660 ORTHO05D008184 3.6e-242 841.6 563 75.8
arahy.Tifrunner.gnm1.ann1.V90YU5 Arachis hypogaea HOM05D006660 ORTHO05D008184 1.4e-241 839.7 561 74.5
TAR626G1025 Trochodendron aralioides HOM05D006660 ORTHO05D008184 1.4e-241 839.7 572 74.7
Ca_16352_v3 Cicer arietinum L. HOM05D006660 ORTHO05D008184 2.3e-241 839.0 566 74.2
arahy.Tifrunner.gnm1.ann1.7S53TL Arachis hypogaea HOM05D006660 ORTHO05D008184 3.9e-241 838.2 561 74.7
arahy.Tifrunner.gnm1.ann1.GN08CG Arachis hypogaea HOM05D006660 ORTHO05D008184 3.9e-241 838.2 561 74.7
CANSAT64G1453 Cannabis sativa HOM05D006660 ORTHO05D008184 8.8e-241 837.0 567 75.0
Sopen07g024990 Solanum pennellii HOM05D006660 ORTHO05D008184 1.5e-240 836.3 577 74.2
Peaxi162Scf01333g00136 Petunia axillaris HOM05D006660 ORTHO05D008184 4.4e-240 834.7 563 75.7
Medtr3g082870 Medicago truncatula HOM05D006660 ORTHO05D008184 9.7e-240 833.6 585 71.5
PGSC0003DMG400006428 Solanum tuberosum HOM05D006660 ORTHO05D008184 9.7e-240 833.6 563 75.3
Sc20g0003860 Simmondsia chinensis HOM05D006660 ORTHO05D008184 2.2e-239 832.4 572 74.7
TPR.G22464 Trifolium pratense HOM05D006660 ORTHO05D008184 5.3e-238 827.8 584 71.6
Psat5g103920 Pisum sativum HOM05D006660 ORTHO05D008184 5.9e-237 824.3 592 70.3
DCAR_019721 Daucus carota HOM05D006660 ORTHO05D008184 1.3e-236 823.2 561 74.0
Gohir.A07G086100 Gossypium hirsutum HOM05D006660 ORTHO05D008184 6.5e-236 820.8 582 72.7
Glyma.20G057100 Glycine max HOM05D006660 ORTHO05D008184 8.5e-236 820.5 564 73.4
AUR62015095 Chenopodium quinoa HOM05D006660 ORTHO05D008184 1.9e-235 819.3 573 71.6
Thhalv10002462m.g Eutrema salsugineum HOM05D006660 ORTHO05D008184 9.4e-235 817.0 581 69.4
THA.LOC104808860 Tarenaya hassleriana HOM05D006660 ORTHO05D008184 9.4e-235 817.0 572 70.8
Cc10_g08860 Coffea canephora HOM05D006660 ORTHO05D008184 1.2e-234 816.6 569 73.1
PSO541G2904 Papaver somniferum HOM05D006660 ORTHO05D008184 6.1e-234 814.3 573 71.6
Lj6g0000837 Lotus japonicus HOM05D006660 ORTHO05D008184 2.3e-233 812.4 566 73.1
HanXRQChr10g0306331 Helianthus annuus HOM05D006660 ORTHO05D008184 3.9e-233 811.6 563 72.1
Lsat_1_v5_gn_5_124741 Lactuca sativa HOM05D006660 ORTHO05D008184 5.2e-233 811.2 558 72.6
Carub.0003s2635 Capsella rubella HOM05D006660 ORTHO05D008184 6.7e-233 810.8 576 69.4
Aqoxy1G02841 Aquilegia oxysepala HOM05D006660 ORTHO05D008184 1.5e-232 809.7 605 67.9
AL3G42350 Arabidopsis lyrata HOM05D006660 ORTHO05D008184 2.0e-232 809.3 593 69.5
Aa31sc53G10 Aethionema arabicum HOM05D006660 ORTHO05D008184 3.3e-232 808.5 581 68.5
PSO675G7408 Papaver somniferum HOM05D006660 ORTHO05D008184 1.3e-231 806.6 572 71.3
AT2G04740 Arabidopsis thaliana HOM05D006660 ORTHO05D008184 4.8e-231 804.7 582 69.4
Sp3g23370 Schrenkiella parvula HOM05D006660 ORTHO05D008184 1.8e-230 802.7 573 68.9
MSTRG.14936 Avicennia marina HOM05D006660 ORTHO05D008184 4.1e-230 801.6 568 70.4
FAN09G0285 Fragaria x ananassa HOM05D006660 ORTHO05D008184 4.1e-230 801.6 582 72.2
BolC3t17779H Brassica oleracea HOM05D006660 ORTHO05D008184 5.9e-229 797.7 583 68.3
MBI16_g31717_MAGBIO Magnolia biondii HOM05D006660 ORTHO05D008184 5.0e-228 794.7 575 70.6
CARHR102690 Cardamine hirsuta HOM05D006660 ORTHO05D008184 6.5e-228 794.3 588 68.5
SGA_v2.0_scaffold73G24530 Striga asiatica HOM05D006660 ORTHO05D008184 1.9e-227 792.7 557 72.0
COL.COLO4_35986 Corchorus olitorius HOM05D006660 ORTHO05D008184 5.5e-227 791.2 585 70.9
BcaB08g34485 Brassica carinata HOM05D006660 ORTHO05D008184 7.2e-227 790.8 582 69.4
BcaC01g03192 Brassica carinata HOM05D006660 ORTHO05D008184 9.4e-227 790.4 581 68.0
EL10Ac3g05658 Beta vulgaris HOM05D006660 ORTHO05D008184 1.2e-226 790.0 563 70.7
C03p55040 Brassica napus HOM05D006660 ORTHO05D008184 1.6e-226 789.6 581 68.0
A03p44410 Brassica napus HOM05D006660 ORTHO05D008184 8.0e-226 787.3 581 68.0
BraA03t13574Z Brassica rapa HOM05D006660 ORTHO05D008184 2.3e-225 785.8 584 68.0
Migut.M00006 Erythranthe guttata HOM05D006660 ORTHO05D008184 4.4e-224 781.6 573 69.3
HPP92_017850 Vanilla planifolia HOM05D006660 ORTHO05D008184 4.4e-224 781.6 575 69.0
AUR62017555 Chenopodium quinoa HOM05D006660 ORTHO05D008184 5.4e-222 774.6 631 64.5
Ah.14g082930 Amaranthus hybridus HOM05D006660 ORTHO05D008184 5.0e-220 768.1 569 68.7
Zm00001eb281240 Zea mays HOM05D006660 ORTHO05D008184 2.1e-202 709.5 581 64.4
Haze_12725 Corylus avellana HOM05D006660 ORTHO05D008184 3.6e-202 708.8 464 77.2
ECA234G1491 Erigeron canadensis HOM05D006660 ORTHO05D008184 4.7e-202 708.4 560 66.1
CiPaw.04G193900 Carya illinoinensis HOM05D006660 ORTHO05D008184 2.3e-201 706.1 460 76.3
Os06g0318200 Oryza sativa ssp. japonica HOM05D006660 ORTHO05D008184 2.3e-201 706.1 578 64.2
SEGI_29705 Sequoiadendron giganteum HOM05D006660 ORTHO05D008184 9.2e-198 694.1 626 58.9
Cpa.g.sc132.76 Carica papaya HOM05D006660 ORTHO05D008184 6.0e-181 638.3 462 70.6
Lalb_Chr24g0402731 Lupinus albus HOM05D006660 ORTHO05D008184 2.4e-177 626.3 421 74.8
Mapoly0031s0110 Marchantia polymorpha HOM05D006660 ORTHO05D008184 4.0e-177 625.5 633 53.6
vmacro09381 Vaccinium macrocarpon HOM05D006660 ORTHO05D008184 1.2e-176 624.0 435 74.3
Pp3c5_19510 Physcomitrium patens HOM05D006660 ORTHO05D008184 3.3e-171 605.9 626 53.2
Pp3c5_19514 Physcomitrium patens HOM05D006660 ORTHO05D008184 3.3e-171 605.9 626 53.2
VMungo1309G1541 Vigna mungo HOM05D006660 ORTHO05D008184 9.6e-171 604.4 415 72.8
Gohir.D07G091200 Gossypium hirsutum HOM05D006660 ORTHO05D008184 4.8e-170 602.1 423 72.8
Dinv07831 Davidia involucrata HOM05D006660 ORTHO05D008184 4.4e-168 595.5 409 74.1
ATR0712G111 Amborella trichopoda HOM05D006660 ORTHO05D008184 9.0e-161 571.2 418 69.9
Oeu040482.1 Olea europaea HOM05D006660 ORTHO05D008184 5.8e-160 568.5 408 70.8
MD17G1109800 Malus domestica HOM05D006660 ORTHO05D008184 6.4e-159 565.1 569 55.2
CDE07G0400 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 3.2e-158 562.8 407 69.5
Atru.chr6.3318 Acer truncatum HOM05D006660 ORTHO05D008184 3.1e-153 546.2 402 69.7
SMO353G0185 Selaginella moellendorffii HOM05D006660 ORTHO05D008184 1.1e-145 521.2 544 51.3
Lj8A132T54 Lonicera japonica HOM05D006660 ORTHO05D008184 3.7e-130 469.5 304 75.3
GSVIVG01030415001 Vitis vinifera HOM05D006660 ORTHO05D008184 1.7e-127 460.7 309 73.1
AagrBONN_evm.TU.Sc2ySwM_344.2917 Anthoceros agrestis HOM05D006660 ORTHO05D008184 1.3e-122 444.5 571 44.8
Hund08409 Selenicereus undatus HOM05D006660 ORTHO05D008184 8.2e-122 441.8 315 69.2
CBR_g47999 Chara braunii HOM05D006660 ORTHO05D008184 4.4e-115 419.5 656 38.4
Lj8C132T7 Lonicera japonica HOM05D006660 ORTHO05D008184 6.3e-106 389.0 239 83.3
GSVIVG01030416001 Vitis vinifera HOM05D006660 ORTHO05D008184 1.7e-87 327.8 197 83.8
CDE04G2012 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 1.8e-76 291.2 538 36.8
Oeu040483.1 Olea europaea HOM05D006660 ORTHO05D008184 1.1e-73 282.0 164 85.4
AagrBONN_evm.TU.Sc2ySwM_228.2541 Anthoceros agrestis HOM05D006660 ORTHO05D008184 3.3e-62 243.8 404 38.6
CDE07G1994 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 1.0e-55 222.2 142 76.1
ATR0712G102 Amborella trichopoda HOM05D006660 ORTHO05D008184 8.7e-55 219.2 141 75.9
Phvul.004G085870 Phaseolus vulgaris HOM05D006660 ORTHO05D008184 7.3e-54 216.1 117 86.3
VMungo1309G0792 Vigna mungo HOM05D006660 ORTHO05D008184 4.0e-52 210.3 128 79.7
Lalb_Chr24g0402711 Lupinus albus HOM05D006660 ORTHO05D008184 5.1e-47 193.4 104 86.5
Cpa.g.sc987.1 Carica papaya HOM05D006660 ORTHO05D008184 3.6e-45 187.2 110 83.6
Atru.chr6.3319 Acer truncatum HOM05D006660 ORTHO05D008184 4.5e-43 180.3 151 64.2
vmacro09380 Vaccinium macrocarpon HOM05D006660 ORTHO05D008184 1.2e-27 129.0 138 54.3
HanXRQChr08g0218831 Helianthus annuus HOM05D006660 ORTHO05D008184 6.1e-24 116.7 68 80.9
CDE04G2605 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 5.1e-15 87.0 54 74.1
Cfa027280 Carpinus fangiana HOM05D006660 ORTHO05D008184 2.2e-10 71.6 163 30.7
Medtr7g094900 Medicago truncatula HOM05D002203 ORTHO05D002647 3.6e-08 64.3 219 26.9
Medtr7g094910 Medicago truncatula HOM05D002203 ORTHO05D002647 3.6e-08 64.3 219 26.9
Os08g0523850 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D008184 4.7e-08 63.9 148 33.8
Os08g0226800 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 2.3e-07 61.6 102 34.3
HanXRQChr11g0336141 Helianthus annuus HOM05D002203 ORTHO05D002647 5.2e-07 60.5 180 25.0
Migut.D00299 Erythranthe guttata HOM05D002203 ORTHO05D002647 1.1e-06 59.3 174 25.9
Pp3c11_17010 Physcomitrium patens HOM05D002203 ORTHO05D002647 1.1e-06 59.3 75 33.3
Cre04.g212100 Chlamydomonas reinhardtii HOM05D009399 ORTHO05D011328 3.3e-06 57.8 135 30.4
Lj2A1172G32 Lonicera japonica HOM05D002203 ORTHO05D002647 3.3e-06 57.8 170 25.9
SGA_v2.0_scaffold138G35338 Striga asiatica HOM05D002203 ORTHO05D002647 4.4e-06 57.4 166 25.3
Pp3c7_11520 Physcomitrium patens HOM05D002203 ORTHO05D002647 5.7e-06 57.0 75 30.7
COL.COLO4_09091 Corchorus olitorius HOM05D002203 ORTHO05D002647 7.4e-06 56.6 166 24.7
Sopen09g026940 Solanum pennellii HOM05D002203 ORTHO05D002647 7.4e-06 56.6 149 27.5
PGSC0003DMG400012880 Solanum tuberosum HOM05D002203 ORTHO05D002647 7.4e-06 56.6 149 27.5
CSS0049394 Camellia sinensis var. sinensis HOM05D002203 ORTHO05D002647 9.7e-06 56.2 166 25.3
CAN.G1549.2 Capsicum annuum HOM05D002203 ORTHO05D002647 9.7e-06 56.2 149 27.5
Cfa015615 Carpinus fangiana HOM05D002203 ORTHO05D002647 9.7e-06 56.2 75 30.7
Haze_00928 Corylus avellana HOM05D002203 ORTHO05D002647 9.7e-06 56.2 75 30.7
Dinv34756 Davidia involucrata HOM05D002203 ORTHO05D002647 9.7e-06 56.2 166 25.9
HPP92_003155 Vanilla planifolia HOM05D002203 ORTHO05D002647 9.7e-06 56.2 149 28.2


User provided reference genes

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