Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0019682 Sechium edule HOM05D005604 ORTHO05D006745 0.0e+00 1132.1 586 100.0
ClCG09G008600 Citrullus lanatus HOM05D005604 ORTHO05D006745 1.2e-277 959.5 552 90.4
CsaV3_7G026370 Cucumis sativus L. HOM05D005604 ORTHO05D006745 2.8e-271 938.3 552 88.2
MELO3C021083.2 Cucumis melo HOM05D005604 ORTHO05D006745 8.1e-271 936.8 552 88.9
Prupe.8G199200 Prunus persica HOM05D005604 ORTHO05D006745 3.3e-208 728.8 553 72.3
Thecc.01G220400 Theobroma cacao HOM05D005604 ORTHO05D006745 3.7e-207 725.3 555 70.1
Potri.002G245700 Populus trichocarpa HOM05D005604 ORTHO05D006745 3.1e-206 722.2 554 70.6
COL.COLO4_15621 Corchorus olitorius HOM05D005604 ORTHO05D006745 2.6e-205 719.2 559 70.5
Dinv12653 Davidia involucrata HOM05D005604 ORTHO05D006745 3.2e-203 712.2 555 69.9
CSS0000075 Camellia sinensis var. sinensis HOM05D005604 ORTHO05D006745 1.2e-202 710.3 555 69.2
Dinv19175 Davidia involucrata HOM05D005604 ORTHO05D006745 2.3e-201 706.1 555 70.6
Atru.chr6.1423 Acer truncatum HOM05D005604 ORTHO05D006745 5.2e-201 704.9 568 67.4
MD05G1171800 Malus domestica HOM05D005604 ORTHO05D006745 6.7e-201 704.5 554 70.9
Cpa.g.sc43.114 Carica papaya HOM05D005604 ORTHO05D006745 8.8e-201 704.1 555 68.8
Duzib138G1747 Durio zibethinus HOM05D005604 ORTHO05D006745 5.7e-200 701.4 557 69.1
QL09p051278 Quercus lobata HOM05D005604 ORTHO05D006745 7.5e-200 701.0 553 68.2
RcHm_v2.0_Chr6g0284121 Rosa chinensis HOM05D005604 ORTHO05D006745 1.3e-199 700.3 562 69.8
MD10G1160100 Malus domestica HOM05D005604 ORTHO05D006745 1.7e-199 699.9 554 70.4
Gorai.001G231700 Gossypium raimondii HOM05D005604 ORTHO05D006745 1.1e-198 697.2 555 68.1
Gohir.A07G199300 Gossypium hirsutum HOM05D005604 ORTHO05D006745 1.8e-198 696.4 554 68.1
Duzib133G0023 Durio zibethinus HOM05D005604 ORTHO05D006745 4.1e-198 695.3 557 68.9
FvH4_2g18560 Fragaria vesca HOM05D005604 ORTHO05D006745 4.1e-198 695.3 556 69.1
FAN15G1583 Fragaria x ananassa HOM05D005604 ORTHO05D006745 4.1e-198 695.3 557 69.1
Gohir.D07G205700 Gossypium hirsutum HOM05D005604 ORTHO05D006745 4.1e-198 695.3 555 67.9
GSVIVG01003930001 Vitis vinifera HOM05D005604 ORTHO05D006745 4.1e-198 695.3 562 69.2
FAN24G1841 Fragaria x ananassa HOM05D005604 ORTHO05D006745 1.3e-196 690.3 556 67.8
CANSAT01G1141 Cannabis sativa HOM05D005604 ORTHO05D006745 2.9e-196 689.1 558 68.5
CiPaw.01G050300 Carya illinoinensis HOM05D005604 ORTHO05D006745 8.5e-196 687.6 560 67.7
CiPaw.02G023400 Carya illinoinensis HOM05D005604 ORTHO05D006745 4.2e-195 685.3 555 68.6
FAN27G1924 Fragaria x ananassa HOM05D005604 ORTHO05D006745 4.2e-195 685.3 557 67.1
Ciclev10019544m.g Citrus clementina HOM05D005604 ORTHO05D006745 9.4e-195 684.1 558 67.0
Actinidia39432 Actinidia chinensis HOM05D005604 ORTHO05D006745 1.3e-191 673.7 558 66.7
TWI36G0921 Tripterygium wilfordii HOM05D005604 ORTHO05D006745 3.1e-190 669.1 559 66.2
Eucgr.K02139 Eucalyptus grandis HOM05D005604 ORTHO05D006745 2.7e-189 666.0 554 66.4
Rhsim13G0047500 Rhododendron simsii HOM05D005604 ORTHO05D006745 1.0e-185 654.1 561 65.6
Hma1.2p1_0226F.1_g095420 Hydrangea macrophylla HOM05D005604 ORTHO05D006745 5.2e-185 651.7 554 64.3
TWI18G0325 Tripterygium wilfordii HOM05D005604 ORTHO05D006745 5.2e-185 651.7 559 66.0
Haze_15255 Corylus avellana HOM05D005604 ORTHO05D006745 1.4e-182 643.7 636 59.6
Actinidia30055 Actinidia chinensis HOM05D005604 ORTHO05D006745 1.8e-182 643.3 518 68.1
VMungo1383G0872 Vigna mungo HOM05D005604 ORTHO05D006745 9.2e-182 641.0 554 64.8
TAR633G2144 Trochodendron aralioides HOM05D005604 ORTHO05D006745 2.7e-181 639.4 561 63.5
vmacro02782 Vaccinium macrocarpon HOM05D005604 ORTHO05D006745 7.8e-181 637.9 609 59.8
TAR362G0631 Trochodendron aralioides HOM05D005604 ORTHO05D006745 1.3e-180 637.1 563 62.3
Glyma.18G167400 Glycine max HOM05D005604 ORTHO05D006745 1.9e-179 633.3 557 66.6
arahy.Tifrunner.gnm1.ann1.6511ZK Arachis hypogaea HOM05D005604 ORTHO05D006745 4.3e-179 632.1 553 66.2
MSTRG.18511 Avicennia marina HOM05D005604 ORTHO05D006745 4.3e-179 632.1 558 62.5
arahy.Tifrunner.gnm1.ann1.S4VI32 Arachis hypogaea HOM05D005604 ORTHO05D006745 3.4e-176 622.5 552 65.6
Migut.D00766 Erythranthe guttata HOM05D005604 ORTHO05D006745 5.7e-176 621.7 559 64.2
Phvul.008G130900 Phaseolus vulgaris HOM05D005604 ORTHO05D006745 1.3e-175 620.5 550 64.0
Sopen06g034740 Solanum pennellii HOM05D005604 ORTHO05D006745 1.3e-175 620.5 553 62.4
CAN.G874.4 Capsicum annuum HOM05D005604 ORTHO05D006745 4.9e-175 618.6 554 62.1
Nitab4.5_0009005g0020 Nicotiana tabacum HOM05D005604 ORTHO05D006745 6.4e-175 618.2 553 62.4
PGSC0003DMG400027951 Solanum tuberosum HOM05D005604 ORTHO05D006745 1.4e-174 617.1 557 62.8
Glyma.08G349100 Glycine max HOM05D005604 ORTHO05D006745 3.2e-174 615.9 561 64.3
Sopen09g022640 Solanum pennellii HOM05D005604 ORTHO05D006745 1.6e-173 613.6 558 62.9
Solyc09g059470.4 Solanum lycopersicum HOM05D005604 ORTHO05D006745 2.7e-173 612.8 558 63.1
Solyc06g083370.3 Solanum lycopersicum HOM05D005604 ORTHO05D006745 4.6e-173 612.1 553 61.7
Lj1g0022594 Lotus japonicus HOM05D005604 ORTHO05D006745 2.3e-172 609.8 536 65.5
Psat3g148680 Pisum sativum HOM05D005604 ORTHO05D006745 3.0e-172 609.4 555 63.1
PGSC0003DMG400020164 Solanum tuberosum HOM05D005604 ORTHO05D006745 5.0e-172 608.6 553 61.5
Lj1A89T69 Lonicera japonica HOM05D005604 ORTHO05D006745 6.6e-172 608.2 609 58.5
Lalb_Chr13g0291101 Lupinus albus HOM05D005604 ORTHO05D006745 8.6e-172 607.8 560 63.6
PSO063G0087 Papaver somniferum HOM05D005604 ORTHO05D006745 1.9e-171 606.7 571 60.9
PSO017G3308 Papaver somniferum HOM05D005604 ORTHO05D006745 2.1e-170 603.2 569 60.8
Medtr7g056243 Medicago truncatula HOM05D005604 ORTHO05D006745 2.8e-170 602.8 549 61.7
DCAR_004740 Daucus carota HOM05D005604 ORTHO05D006745 4.7e-170 602.1 558 60.9
DCAR_012669 Daucus carota HOM05D005604 ORTHO05D006745 4.7e-170 602.1 560 60.4
HanXRQChr04g0108051 Helianthus annuus HOM05D005604 ORTHO05D006745 8.0e-170 601.3 558 61.6
Ah.15g093490 Amaranthus hybridus HOM05D005604 ORTHO05D006745 2.3e-169 599.7 587 58.8
Nitab4.5_0003020g0080 Nicotiana tabacum HOM05D005604 ORTHO05D006745 6.8e-169 598.2 574 60.3
MBI07_g18990_MAGBIO Magnolia biondii HOM05D005604 ORTHO05D006745 9.8e-168 594.3 563 61.5
AUR62001131 Chenopodium quinoa HOM05D005604 ORTHO05D006745 2.0e-165 586.6 582 58.4
ECA236G4946 Erigeron canadensis HOM05D005604 ORTHO05D006745 3.5e-165 585.9 521 62.8
Sabra02G0187000 Salix brachista HOM05D005604 ORTHO05D006745 3.5e-165 585.9 469 68.4
PGR044G1204 Punica granatum HOM05D005604 ORTHO05D006745 2.5e-163 579.7 572 61.5
AUR62016550 Chenopodium quinoa HOM05D005604 ORTHO05D006745 5.6e-163 578.6 582 58.1
Cc01_g16720 Coffea canephora HOM05D005604 ORTHO05D006745 5.8e-160 568.5 556 60.3
THA.LOC104822492 Tarenaya hassleriana HOM05D005604 ORTHO05D006745 7.1e-158 561.6 569 58.9
EL10Ac7g17895 Beta vulgaris HOM05D005604 ORTHO05D006745 7.8e-157 558.1 584 56.2
THA.LOC104802659 Tarenaya hassleriana HOM05D005604 ORTHO05D006745 6.6e-156 555.1 580 59.8
Carub.0003s0673 Capsella rubella HOM05D005604 ORTHO05D006745 1.5e-155 553.9 571 58.5
Aqoxy2G03983 Aquilegia oxysepala HOM05D005604 ORTHO05D006745 5.6e-155 552.0 567 57.7
Lsat_1_v5_gn_9_15140 Lactuca sativa HOM05D005604 ORTHO05D006745 1.6e-154 550.4 565 58.6
AT3G07210 Arabidopsis thaliana HOM05D005604 ORTHO05D006745 2.8e-154 549.7 572 59.1
CARHR081860 Cardamine hirsuta HOM05D005604 ORTHO05D006745 4.7e-154 548.9 577 58.4
Aa31LG5G17790 Aethionema arabicum HOM05D005604 ORTHO05D006745 1.4e-153 547.4 569 59.6
Nitab4.5_0003317g0030 Nicotiana tabacum HOM05D005604 ORTHO05D006745 8.9e-153 544.7 695 49.4
Lsat_1_v5_gn_8_89380 Lactuca sativa HOM05D005604 ORTHO05D006745 2.6e-152 543.1 566 57.6
Peaxi162Scf01312g00047 Petunia axillaris HOM05D005604 ORTHO05D006745 4.4e-152 542.3 470 62.3
AL3G18480 Arabidopsis lyrata HOM05D005604 ORTHO05D006745 5.8e-152 542.0 571 57.4
Thhalv10020454m.g Eutrema salsugineum HOM05D005604 ORTHO05D006745 5.8e-152 542.0 572 56.8
Nitab4.5_0000045g0530 Nicotiana tabacum HOM05D005604 ORTHO05D006745 3.8e-151 539.3 694 48.8
Sp3g06160 Schrenkiella parvula HOM05D005604 ORTHO05D006745 1.2e-149 534.3 569 56.9
BcaC05g29746 Brassica carinata HOM05D005604 ORTHO05D006745 3.3e-147 526.2 574 57.0
unitig_0.g223 Utricularia gibba HOM05D005604 ORTHO05D006745 1.5e-144 517.3 561 57.2
unitig_60.g25697 Utricularia gibba HOM05D005604 ORTHO05D006745 3.4e-144 516.2 557 53.3
HanXRQChr10g0279511 Helianthus annuus HOM05D005604 ORTHO05D006745 9.9e-144 514.6 561 54.9
Peaxi162Scf00068g02416 Petunia axillaris HOM05D005604 ORTHO05D006745 9.9e-144 514.6 637 49.5
Manes.13G049200 Manihot esculenta HOM05D005604 ORTHO05D006745 3.2e-142 509.6 452 63.9
ECA247G0587 Erigeron canadensis HOM05D005604 ORTHO05D006745 5.1e-140 502.3 535 56.1
BcaC05g29850 Brassica carinata HOM05D005604 ORTHO05D006745 1.4e-137 494.2 579 56.0
C05p60150 Brassica napus HOM05D005604 ORTHO05D006745 2.4e-137 493.4 579 56.0
BolC5t34666H Brassica oleracea HOM05D005604 ORTHO05D006745 2.4e-137 493.4 579 56.0
BraA05t22827Z Brassica rapa HOM05D005604 ORTHO05D006745 3.1e-137 493.0 577 54.8
A05p41000 Brassica napus HOM05D005604 ORTHO05D006745 6.9e-137 491.9 577 54.6
ATR0561G172 Amborella trichopoda HOM05D005604 ORTHO05D006745 4.8e-130 469.2 571 51.8
Hund05575 Selenicereus undatus HOM05D005604 ORTHO05D006745 1.2e-125 454.5 586 50.2
Nn1g07990 Nelumbo nucifera HOM05D005604 ORTHO05D006745 1.3e-124 451.1 431 61.9
DCAR_004736 Daucus carota HOM05D005604 ORTHO05D006745 1.7e-119 434.1 411 60.8
Zm00001eb143450 Zea mays HOM05D005604 ORTHO05D006745 3.2e-118 429.9 568 50.4
HPP92_011784 Vanilla planifolia HOM05D005604 ORTHO05D006745 1.1e-115 421.4 565 49.6
Os01g0917200 Oryza sativa ssp. japonica HOM05D005604 ORTHO05D006745 5.3e-113 412.5 515 51.7
CDE05G2031 Ceratophyllum demersum HOM05D005604 ORTHO05D006745 7.4e-107 392.1 550 45.3
Sc05g0001960 Simmondsia chinensis HOM05D005604 ORTHO05D006745 7.4e-107 392.1 387 58.9
SGA_v2.0_scaffold158G37516 Striga asiatica HOM05D005604 ORTHO05D006745 1.8e-84 317.8 314 58.3
Zm00001eb175070 Zea mays HOM05D005604 ORTHO05D006745 3.7e-82 310.1 568 40.0
Os08g0528800 Oryza sativa ssp. japonica HOM05D005604 ORTHO05D006745 5.9e-80 302.8 566 38.7
TPR.G6488 Trifolium pratense HOM05D005604 ORTHO05D006745 9.8e-75 285.4 317 56.5
CAN.G1432.2 Capsicum annuum HOM05D005604 ORTHO05D006745 8.3e-66 255.8 498 39.4
CDE05G1628 Ceratophyllum demersum HOM05D005604 ORTHO05D006745 1.0e-63 248.8 357 43.4
SEGI_00167 Sequoiadendron giganteum HOM05D005604 ORTHO05D006745 8.6e-47 192.6 265 41.5
DCAR_026186 Daucus carota HOM05D005604 ORTHO05D006745 2.1e-40 171.4 480 34.4
ECA247G2712 Erigeron canadensis HOM05D005604 ORTHO05D006745 1.7e-34 151.8 156 59.6
Manes.12G047141 Manihot esculenta HOM05D005604 ORTHO05D006745 1.1e-25 122.5 86 73.3
Oeu057862.1 Olea europaea HOM05D005604 ORTHO05D006745 3.0e-23 114.4 85 70.6
Gohir.A05G304001 Gossypium hirsutum HOM05D005604 ORTHO05D006745 1.5e-22 112.1 112 58.9
TPR.G6487 Trifolium pratense HOM05D005604 ORTHO05D006745 1.5e-19 102.1 84 67.9
AagrBONN_evm.TU.Sc2ySwM_117.906 Anthoceros agrestis HOM05D005604 ORTHO05D006745 3.8e-18 97.4 251 29.9
SMO117G0236 Selaginella moellendorffii HOM05D005604 ORTHO05D006745 3.9e-15 87.4 205 28.8
AagrBONN_evm.TU.Sc2ySwM_362.1199 Anthoceros agrestis HOM05D005604 ORTHO05D006745 1.5e-14 85.5 197 36.0
Mapoly0029s0037 Marchantia polymorpha HOM05D005604 ORTHO05D006745 1.9e-14 85.1 252 30.6
AagrBONN_evm.TU.Sc2ySwM_368.1401 Anthoceros agrestis HOM05D005604 ORTHO05D006745 2.1e-13 81.6 177 33.3
Hma1.2p1_1324F.1_g275630 Hydrangea macrophylla HOM05D005604 ORTHO05D006745 6.9e-12 76.6 74 58.1
QL09p051399 Quercus lobata HOM05D005604 ORTHO05D006745 1.4e-09 68.9 60 65.0
QL09p051344 Quercus lobata HOM05D005604 ORTHO05D006745 1.5e-06 58.9 41 70.7


User provided reference genes

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