Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0019641 Sechium edule HOM05D004765 ORTHO05D005900 0.0e+00 1119.8 565 100.0
ClCG01G011820 Citrullus lanatus HOM05D004765 ORTHO05D005900 6.8e-299 1030.0 565 91.0
MELO3C025589.2 Cucumis melo HOM05D004765 ORTHO05D005900 6.5e-294 1013.4 565 89.7
CsaV3_1G015080 Cucumis sativus L. HOM05D004765 ORTHO05D005900 3.2e-293 1011.1 565 89.7
Cfa009988 Carpinus fangiana HOM05D004765 ORTHO05D005900 4.3e-261 904.4 565 80.4
CiPaw.14G098100 Carya illinoinensis HOM05D004765 ORTHO05D005900 4.4e-258 894.4 565 78.6
Prupe.6G135800 Prunus persica HOM05D004765 ORTHO05D005900 2.9e-257 891.7 566 79.3
Manes.11G164300 Manihot esculenta HOM05D004765 ORTHO05D005900 1.9e-256 889.0 565 77.7
Potri.009G160400 Populus trichocarpa HOM05D004765 ORTHO05D005900 2.3e-254 882.1 566 77.6
QL01p011857 Quercus lobata HOM05D004765 ORTHO05D005900 3.0e-254 881.7 564 77.1
Ciclev10028115m.g Citrus clementina HOM05D004765 ORTHO05D005900 2.5e-253 878.6 565 77.3
Potri.004G198200 Populus trichocarpa HOM05D004765 ORTHO05D005900 3.3e-253 878.2 567 77.6
Haze_23347 Corylus avellana HOM05D004765 ORTHO05D005900 1.2e-252 876.3 633 71.6
RcHm_v2.0_Chr5g0045881 Rosa chinensis HOM05D004765 ORTHO05D005900 6.2e-252 874.0 565 77.5
Dinv22819 Davidia involucrata HOM05D004765 ORTHO05D005900 8.1e-252 873.6 563 77.4
Sabra04G0134200 Salix brachista HOM05D004765 ORTHO05D005900 2.4e-251 872.1 564 77.1
Sabra09G0125600 Salix brachista HOM05D004765 ORTHO05D005900 3.1e-251 871.7 570 77.0
MD03G1149800 Malus domestica HOM05D004765 ORTHO05D005900 5.2e-251 870.9 554 78.9
Phvul.011G096100 Phaseolus vulgaris HOM05D004765 ORTHO05D005900 1.5e-250 869.4 565 76.3
GSVIVG01036081001 Vitis vinifera HOM05D004765 ORTHO05D005900 1.5e-250 869.4 565 77.7
Glyma.11G181400 Glycine max HOM05D004765 ORTHO05D005900 3.4e-250 868.2 565 76.1
TPR.G17196 Trifolium pratense HOM05D004765 ORTHO05D005900 7.6e-250 867.1 565 76.3
MD11G1168600 Malus domestica HOM05D004765 ORTHO05D005900 2.2e-249 865.5 557 77.9
Thecc.09G278900 Theobroma cacao HOM05D004765 ORTHO05D005900 2.9e-249 865.1 557 77.6
Ca_19442_v3 Cicer arietinum L. HOM05D004765 ORTHO05D005900 8.4e-249 863.6 565 75.9
CANSAT54G2137 Cannabis sativa HOM05D004765 ORTHO05D005900 1.9e-248 862.4 567 75.5
PGR119G0504 Punica granatum HOM05D004765 ORTHO05D005900 2.4e-248 862.1 565 75.4
Actinidia07259 Actinidia chinensis HOM05D004765 ORTHO05D005900 3.2e-248 861.7 564 76.8
Glyma.12G091700 Glycine max HOM05D004765 ORTHO05D005900 3.2e-248 861.7 565 75.2
COL.COLO4_34006 Corchorus olitorius HOM05D004765 ORTHO05D005900 9.3e-248 860.1 557 77.7
Cpa.g.sc195.23 Carica papaya HOM05D004765 ORTHO05D005900 2.1e-247 859.0 548 77.2
Gohir.D09G096800 Gossypium hirsutum HOM05D004765 ORTHO05D005900 2.1e-247 859.0 557 77.4
Actinidia24229 Actinidia chinensis HOM05D004765 ORTHO05D005900 4.6e-247 857.8 568 76.1
Dinv08934 Davidia involucrata HOM05D004765 ORTHO05D005900 4.6e-247 857.8 562 75.8
Gorai.006G113500 Gossypium raimondii HOM05D004765 ORTHO05D005900 7.8e-247 857.1 557 77.0
arahy.Tifrunner.gnm1.ann1.HXUJ4C Arachis hypogaea HOM05D004765 ORTHO05D005900 1.0e-246 856.7 566 75.6
Gohir.A09G097000 Gossypium hirsutum HOM05D004765 ORTHO05D005900 2.3e-246 855.5 557 76.7
arahy.Tifrunner.gnm1.ann1.E8Y1JT Arachis hypogaea HOM05D004765 ORTHO05D005900 6.6e-246 854.0 566 75.4
FAN16G1441 Fragaria x ananassa HOM05D004765 ORTHO05D005900 6.6e-246 854.0 561 76.3
FAN11G2377 Fragaria x ananassa HOM05D004765 ORTHO05D005900 1.9e-245 852.4 560 75.9
CSS0013873 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 3.3e-245 851.7 557 76.7
TWI31G1403 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 3.3e-245 851.7 559 76.4
CSS0028820 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 5.6e-245 850.9 557 76.7
Gorai.009G084100 Gossypium raimondii HOM05D004765 ORTHO05D005900 5.6e-245 850.9 557 76.1
Gohir.D05G082500 Gossypium hirsutum HOM05D004765 ORTHO05D005900 1.3e-244 849.7 557 75.9
Gohir.A05G079600 Gossypium hirsutum HOM05D004765 ORTHO05D005900 6.2e-244 847.4 557 75.8
Medtr4g052530 Medicago truncatula HOM05D004765 ORTHO05D005900 3.1e-243 845.1 582 73.0
FAN21G2648 Fragaria x ananassa HOM05D004765 ORTHO05D005900 5.3e-243 844.3 576 74.0
TWI79G1303 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 1.5e-242 842.8 559 75.1
Lj3g0002417 Lotus japonicus HOM05D004765 ORTHO05D005900 2.6e-242 842.0 565 74.3
Lalb_Chr03g0028231 Lupinus albus HOM05D004765 ORTHO05D005900 2.6e-242 842.0 566 74.0
CSS0015967 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 4.4e-242 841.3 560 75.7
CSS0022046 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 1.7e-241 839.3 560 75.5
FAN25G0471 Fragaria x ananassa HOM05D004765 ORTHO05D005900 2.2e-241 839.0 584 72.9
Lalb_Chr01g0004931 Lupinus albus HOM05D004765 ORTHO05D005900 4.2e-240 834.7 566 73.1
DCAR_006171 Daucus carota HOM05D004765 ORTHO05D005900 1.2e-239 833.2 558 75.4
Atru.chr3.3169 Acer truncatum HOM05D004765 ORTHO05D005900 2.7e-239 832.0 547 76.4
ECA248G3663 Erigeron canadensis HOM05D004765 ORTHO05D005900 1.9e-237 825.9 559 73.7
Eucgr.J00522 Eucalyptus grandis HOM05D004765 ORTHO05D005900 1.9e-237 825.9 544 74.1
vmacro14340 Vaccinium macrocarpon HOM05D004765 ORTHO05D005900 2.5e-237 825.5 554 74.9
AT3G44330 Arabidopsis thaliana HOM05D004765 ORTHO05D005900 7.4e-237 823.9 559 74.6
Carub.0005s1005 Capsella rubella HOM05D004765 ORTHO05D005900 3.6e-236 821.6 562 74.0
THA.LOC104814781 Tarenaya hassleriana HOM05D004765 ORTHO05D005900 3.6e-236 821.6 560 74.3
CARHR104550 Cardamine hirsuta HOM05D004765 ORTHO05D005900 4.8e-236 821.2 561 74.3
Lsat_1_v5_gn_1_77581 Lactuca sativa HOM05D004765 ORTHO05D005900 8.1e-236 820.5 557 73.4
Sp5g16890 Schrenkiella parvula HOM05D004765 ORTHO05D005900 1.4e-235 819.7 562 74.6
AL5G22480 Arabidopsis lyrata HOM05D004765 ORTHO05D005900 5.3e-235 817.8 559 73.9
Sc12g0004610 Simmondsia chinensis HOM05D004765 ORTHO05D005900 5.3e-235 817.8 565 72.6
Thhalv10010249m.g Eutrema salsugineum HOM05D004765 ORTHO05D005900 9.0e-235 817.0 567 74.3
Rhsim01G0203800 Rhododendron simsii HOM05D004765 ORTHO05D005900 2.6e-234 815.5 607 69.7
ATR0081G060 Amborella trichopoda HOM05D004765 ORTHO05D005900 1.3e-233 813.1 567 72.1
Cc01_g08830 Coffea canephora HOM05D004765 ORTHO05D005900 1.3e-233 813.1 573 71.6
BcaB01g01169 Brassica carinata HOM05D004765 ORTHO05D005900 2.2e-233 812.4 560 73.2
PSO339G1244 Papaver somniferum HOM05D004765 ORTHO05D005900 2.9e-233 812.0 565 72.9
Nn6g34806 Nelumbo nucifera HOM05D004765 ORTHO05D005900 4.9e-233 811.2 565 73.6
Hund20934 Selenicereus undatus HOM05D004765 ORTHO05D005900 4.2e-232 808.1 552 73.6
PSO801G0028 Papaver somniferum HOM05D004765 ORTHO05D005900 5.5e-232 807.7 565 72.4
BraA06t25294Z Brassica rapa HOM05D004765 ORTHO05D005900 1.2e-231 806.6 559 73.2
Duzib170G0619 Durio zibethinus HOM05D004765 ORTHO05D005900 1.6e-231 806.2 557 72.5
HanXRQChr01g0024031 Helianthus annuus HOM05D004765 ORTHO05D005900 2.7e-231 805.4 559 71.9
BcaC01g02231 Brassica carinata HOM05D004765 ORTHO05D005900 4.6e-231 804.7 562 72.4
A06p26850 Brassica napus HOM05D004765 ORTHO05D005900 4.6e-231 804.7 562 72.8
A06p22050 Brassica napus HOM05D004765 ORTHO05D005900 2.5e-229 798.9 552 73.2
C03p69330 Brassica napus HOM05D004765 ORTHO05D005900 4.3e-229 798.1 557 72.7
BolC3t19191H Brassica oleracea HOM05D004765 ORTHO05D005900 4.3e-229 798.1 557 72.7
Migut.N02474 Erythranthe guttata HOM05D004765 ORTHO05D005900 5.6e-229 797.7 549 72.9
Nitab4.5_0003068g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 5.6e-229 797.7 554 74.0
BcaC01g02031 Brassica carinata HOM05D004765 ORTHO05D005900 2.8e-228 795.4 557 72.4
MSTRG.18770 Avicennia marina HOM05D004765 ORTHO05D005900 4.8e-228 794.7 566 71.0
HanXRQChr11g0343661 Helianthus annuus HOM05D004765 ORTHO05D005900 1.1e-227 793.5 559 70.7
Peaxi162Scf00345g01023 Petunia axillaris HOM05D004765 ORTHO05D005900 1.4e-227 793.1 561 72.9
Aqoxy2G01052 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 2.4e-227 792.3 568 70.1
Nitab4.5_0000227g0370 Nicotiana tabacum HOM05D004765 ORTHO05D005900 2.4e-227 792.3 554 73.5
Solyc11g068670.2 Solanum lycopersicum HOM05D004765 ORTHO05D005900 1.3e-225 786.6 567 71.1
Aa31LG4G13830 Aethionema arabicum HOM05D004765 ORTHO05D005900 1.7e-225 786.2 534 74.0
Sopen11g027390 Solanum pennellii HOM05D004765 ORTHO05D005900 1.7e-225 786.2 567 71.1
Psat7g187280 Pisum sativum HOM05D004765 ORTHO05D005900 2.9e-225 785.4 520 74.0
Solyc01g009380.3 Solanum lycopersicum HOM05D004765 ORTHO05D005900 2.9e-225 785.4 569 71.7
BcaB02g10755 Brassica carinata HOM05D004765 ORTHO05D005900 1.1e-224 783.5 561 71.7
Peaxi162Scf00224g00217 Petunia axillaris HOM05D004765 ORTHO05D005900 3.2e-224 781.9 547 72.2
Aqoxy4G02718 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 1.6e-223 779.6 606 66.3
CAN.G745.10 Capsicum annuum HOM05D004765 ORTHO05D005900 1.8e-222 776.2 551 71.0
Nitab4.5_0008177g0070 Nicotiana tabacum HOM05D004765 ORTHO05D005900 4.3e-221 771.5 606 67.5
Nitab4.5_0000731g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 2.4e-219 765.8 556 71.0
AUR62020257 Chenopodium quinoa HOM05D004765 ORTHO05D005900 2.0e-218 762.7 533 73.4
SalBow6G2851 Salvia bowleyana HOM05D004765 ORTHO05D005900 3.8e-217 758.4 589 66.6
CDE08G1681 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 8.5e-217 757.3 538 71.0
Oeu051604.1 Olea europaea HOM05D004765 ORTHO05D005900 7.9e-215 750.7 547 69.3
Os08g0102100 Oryza sativa ssp. japonica HOM05D004765 ORTHO05D005900 1.8e-214 749.6 556 66.5
Duzib168G0312 Durio zibethinus HOM05D004765 ORTHO05D005900 3.0e-214 748.8 557 68.9
SGA_v2.0_scaffold177G39433 Striga asiatica HOM05D004765 ORTHO05D005900 1.9e-213 746.1 567 67.4
EL10Ac7g16329 Beta vulgaris HOM05D004765 ORTHO05D005900 6.3e-212 741.1 643 62.4
HPP92_006357 Vanilla planifolia HOM05D004765 ORTHO05D005900 8.2e-212 740.7 555 67.7
Zm00001eb259900 Zea mays HOM05D004765 ORTHO05D005900 1.8e-211 739.6 557 66.1
SGA_v2.0_scaffold295G47508 Striga asiatica HOM05D004765 ORTHO05D005900 4.5e-210 734.9 551 67.0
FvH4_3g25670 Fragaria vesca HOM05D004765 ORTHO05D005900 2.1e-207 726.1 476 75.4
unitig_0.g1473 Utricularia gibba HOM05D004765 ORTHO05D005900 1.7e-204 716.5 585 62.7
Lj1A257T30 Lonicera japonica HOM05D004765 ORTHO05D005900 1.0e-198 697.2 434 80.0
Mapoly0185s0020 Marchantia polymorpha HOM05D004765 ORTHO05D005900 8.2e-196 687.6 562 61.2
CDE02G4012 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 7.2e-192 674.5 568 63.4
Zm00001eb198750 Zea mays HOM05D004765 ORTHO05D005900 9.4e-192 674.1 505 64.8
Sc12g0004660 Simmondsia chinensis HOM05D004765 ORTHO05D005900 4.8e-188 661.8 477 69.8
Migut.D02363 Erythranthe guttata HOM05D004765 ORTHO05D005900 5.3e-187 658.3 482 68.0
Pp3c12_11630 Physcomitrium patens HOM05D004765 ORTHO05D005900 4.7e-183 645.2 548 60.2
SMO141G0161 Selaginella moellendorffii HOM05D004765 ORTHO05D005900 2.6e-173 612.8 557 58.0
AUR62001526 Chenopodium quinoa HOM05D004765 ORTHO05D005900 1.3e-164 583.9 413 72.2
BraA06t25618Z Brassica rapa HOM05D004765 ORTHO05D005900 2.4e-163 579.7 404 72.3
C03p67600 Brassica napus HOM05D004765 ORTHO05D005900 7.0e-163 578.2 404 71.8
BolSC21t60262H Brassica oleracea HOM05D004765 ORTHO05D005900 7.8e-162 574.7 404 71.5
TAR633G2468 Trochodendron aralioides HOM05D004765 ORTHO05D005900 5.8e-157 558.5 367 75.5
Oeu014468.1 Olea europaea HOM05D004765 ORTHO05D005900 4.9e-156 555.4 359 77.4
CBR_g17963 Chara braunii HOM05D004765 ORTHO05D005900 2.8e-143 513.1 547 49.7
AagrBONN_evm.TU.Sc2ySwM_368.2350 Anthoceros agrestis HOM05D004765 ORTHO05D005900 9.0e-134 481.5 533 46.3
Sopen01g004890 Solanum pennellii HOM05D004765 ORTHO05D005900 2.9e-124 449.9 335 69.0
VMungo1127G1239 Vigna mungo HOM05D004765 ORTHO05D005900 5.1e-121 439.1 272 77.6
CAN.G226.4 Capsicum annuum HOM05D004765 ORTHO05D005900 2.5e-107 393.7 335 62.7
SEGI_38882 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 1.1e-96 358.2 220 78.6
CAN.G30.1 Capsicum annuum HOM05D004765 ORTHO05D005900 6.3e-79 299.3 195 72.8
Migut.D02428 Erythranthe guttata HOM05D004765 ORTHO05D005900 1.2e-77 295.0 200 76.0
Psat4g157520 Pisum sativum HOM05D004765 ORTHO05D005900 1.7e-60 238.0 197 62.9
CAN.G198.33 Capsicum annuum HOM05D004765 ORTHO05D005900 5.0e-52 209.9 152 68.4
SEGI_20304 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 7.3e-51 206.1 141 72.3
CAN.G1211.3 Capsicum annuum HOM05D004765 ORTHO05D005900 3.7e-47 193.7 147 66.7
CAN.G79.6 Capsicum annuum HOM05D004765 ORTHO05D005900 1.2e-40 172.2 189 51.3
CAN.G79.7 Capsicum annuum HOM05D004765 ORTHO05D005900 2.0e-40 171.4 118 69.5
TAR633G0557 Trochodendron aralioides HOM05D004765 ORTHO05D005900 2.3e-28 131.3 85 81.2
Lj1C257T9 Lonicera japonica HOM05D004765 ORTHO05D030006 3.3e-27 127.5 90 66.7
QL04p027443 Quercus lobata HOM05D004765 ORTHO05D030006 3.6e-26 124.0 83 74.7
SEGI_24377 Sequoiadendron giganteum HOM05D004765 ORTHO05D030006 1.1e-25 122.5 92 66.3
Sc12g0004650 Simmondsia chinensis HOM05D004765 ORTHO05D030006 3.8e-23 114.0 89 64.0
VMungo0251G2550 Vigna mungo HOM05D000107 ORTHO05D000001 1.6e-21 108.6 108 52.8
SEGI_19690 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 5.1e-20 103.6 74 64.9
Os12g0509400 Oryza sativa ssp. japonica HOM05D004765 ORTHO05D296799 1.5e-08 65.5 55 58.2
Pp3c10_16910 Physcomitrium patens HOM05D004765 ORTHO05D315325 2.6e-08 64.7 108 37.0
Zm00001eb190390 Zea mays HOM05D002544 ORTHO05D007856 7.1e-06 56.6 297 23.6


User provided reference genes

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